View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_18 (Length: 517)
Name: NF18315_low_18
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 56 - 501
Target Start/End: Complemental strand, 19395631 - 19395187
Alignment:
| Q |
56 |
caaagtcatcaatgtcaacatgtcctcatgtttgtctcaaaggttaaaattacatgagtgatgctttgctacttatgcgatgccttattttttacatttc |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19395631 |
caaagtcatcaatgtcaacatgtcctcatgtttgtctcaa-ggttaaaattacatgagtgatgttttgctacttatgcgatgccttattttttacatttc |
19395533 |
T |
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| Q |
156 |
aatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaatcacannnnnnnatattataaagtaatggtgggacttctttt |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19395532 |
aatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaatcacatttttttatattataaagtaatggtgggacttcttta |
19395433 |
T |
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| Q |
256 |
aggatagtagtcaaaagaaaagcttttgtttcaggatatagattctgatttatcatgccttcaattgtgttcagtattgaacttgaataagataaaataa |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19395432 |
aggatagtagtcaaaagaaaagcttttgtttcaggatatagattctgatttatcatgccttcaattgtgttcagtattgaacttgaataagataaaataa |
19395333 |
T |
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| Q |
356 |
ttcaagtggaattagaagttacttacaaccaaatgtaaccaactgattgtgaagagtagctataaaaacaataacttgatgctagtattagagaataatt |
455 |
Q |
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| T |
19395332 |
ttcaagtggaattagaagttacttacaaccaaatgtaaccaactgattgtgaagagtagctataaaaacaataacttgatgctagtattagagaataatt |
19395233 |
T |
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| Q |
456 |
tatagctgaaggaagggagcaaagtttttatacaaacactacatat |
501 |
Q |
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| T |
19395232 |
tatagctgaaggaagggagcaaagtttttatacaaacactacatat |
19395187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 147 - 334
Target Start/End: Original strand, 18871595 - 18871776
Alignment:
| Q |
147 |
ttacatttcaatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaatcacannnnnnnatattataaagtaatggtggg |
246 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||||||||||||| | ||||||||||| ||| |||||||||||||| ||| | |
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| T |
18871595 |
ttacatttcaatgctgtcttaaatccatcaatttgttccaatctcattttctttct-gaaaagtgaattacatttttt--tattataaagtaattgtgag |
18871691 |
T |
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| Q |
247 |
acttcttttaggatagtagtcaaaagaaaagcttttgtttcaggatatagattctgatttatcatgccttcaattgtgttcagtattg |
334 |
Q |
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|||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
18871692 |
acttattg-aggatagtagtcaaaagaaaagcttttgtttcaagata--gattctgatttatcatgccttcaattgtgttctgtattg |
18871776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 19383304 - 19383220
Alignment:
| Q |
25 |
ttaaaccataactcaactcaaactatcatttcaaagtcatcaatgtcaacatgtcctcatgtttgtctcaaaggttaaaattacatg |
111 |
Q |
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| T |
19383304 |
ttaaaccataacacaactcaaactatcatttcaaagtcatcaatgtcaacatgtcctcatgtttgtctc--aggttaaaattacatg |
19383220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 434 - 501
Target Start/End: Original strand, 18871848 - 18871915
Alignment:
| Q |
434 |
atgctagtattagagaataatttatagctgaaggaagggagcaaagtttttatacaaacactacatat |
501 |
Q |
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| T |
18871848 |
atgctagtattagagcataatttagagctgaaggaagggagcaaagtttttatacaaacgctacatat |
18871915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 19383129 - 19383077
Alignment:
| Q |
269 |
aaagaaaagcttttgtttcaggatatagattctgatttatcatgccttcaattgt |
323 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||| |||||||||| |
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| T |
19383129 |
aaagaaaagcttttgtttcaagata--gattctgatttatcatgacttcaattgt |
19383077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 19402176 - 19402098
Alignment:
| Q |
17 |
tttatagtttaaaccataactcaactcaaactatcatttcaaagtcatcaatgtcaacatgtcctcatgtttgtctcaa |
95 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| || ||||||||| || ||| ||||| ||| || |||||||| |
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| T |
19402176 |
tttatagtttcaaccataactcaactcaaactatccattaaaagtcatctataacaatatgtcttcaagtctgtctcaa |
19402098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 334
Target Start/End: Complemental strand, 18106020 - 18105979
Alignment:
| Q |
293 |
atagattctgatttatcatgccttcaattgtgttcagtattg |
334 |
Q |
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| T |
18106020 |
atagattatgatttatcatgccttcaattgtgttctgtattg |
18105979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 19383038 - 19383005
Alignment:
| Q |
333 |
tgaacttgaataagataaaataattcaagtggaa |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
19383038 |
tgaacttgaataagataaaataattcaagtggaa |
19383005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 19428088 - 19428052
Alignment:
| Q |
332 |
ttgaacttgaataagataaaataattcaagtggaatt |
368 |
Q |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
19428088 |
ttgaacttgaataatataaaataattcaagtggaatt |
19428052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 18871571 - 18871600
Alignment:
| Q |
81 |
tcatgtttgtctcaaaggttaaaattacat |
110 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
18871571 |
tcatgtttgtctcaaaggttaaaattacat |
18871600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 19337637 - 19337601
Alignment:
| Q |
332 |
ttgaacttgaataagataaaataattcaagtggaatt |
368 |
Q |
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|||||||||| |||||||||| ||||||||||||||| |
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| T |
19337637 |
ttgaacttgactaagataaaacaattcaagtggaatt |
19337601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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