View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_20 (Length: 499)
Name: NF18315_low_20
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 483
Target Start/End: Complemental strand, 35383677 - 35383208
Alignment:
| Q |
14 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttcctatat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35383677 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttcctatat |
35383578 |
T |
|
| Q |
114 |
ataataaaatcagttacatcatttaatgagtctaccaaatagatcatcaaaccagatagtttcattgcaaaagaattcataaacaacaagttgaagaaaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35383577 |
ataataaaatcagttacatcatttaatgagtctaccaaatagatcatcaaaccagatagtttcattgaaaaagaattcataaacaacaagttgaagaaaa |
35383478 |
T |
|
| Q |
214 |
aagcagataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagccttttgc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35383477 |
aagcagataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagccttttgc |
35383378 |
T |
|
| Q |
314 |
tttgcatctaacccttcagcaagcccagcatagtactcaaaacaactaataacatcatcctatataatcaaaccagagcagagtccaagtaagcnnnnnn |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35383377 |
tttgcatctaacccttcagcaagcccagcatagtactcaaaacaactaataacatcatcctatataatcaaaccagagcagagtccaagtaagcaaaaaa |
35383278 |
T |
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| Q |
414 |
nnnnnnnnngaagtaaggcaacatgttttttcagtcgaataataattaccagatccgctagtgcttcatc |
483 |
Q |
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| T |
35383277 |
gaaaaaaaagaagtaaggcaacatgtttttccagtcgaataataattaccagatccgctagtgcttcatc |
35383208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 220 - 367
Target Start/End: Original strand, 35363432 - 35363579
Alignment:
| Q |
220 |
ataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagccttttgctttgca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || ||||||| ||||||||| |||| |||||| |||||||||| | |
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| T |
35363432 |
ataccatggagtaattaatgcaacaacaccaataggctccttgagaacatagcttttgaaggtattcataggaagagatataggagctttttgctttgta |
35363531 |
T |
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| Q |
320 |
tctaacccttcagcaagcccagcatagtactcaaaacaactaataaca |
367 |
Q |
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|| || ||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
35363532 |
tccaatccttcagcaagtccagcatagtactcaaaacaaccaataaca |
35363579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 35363271 - 35363367
Alignment:
| Q |
14 |
cacagatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttccta |
110 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |
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| T |
35363271 |
cacagatgccaattcagacggcttcaagattgcagcacaaccagcagccagagctggagcaattttccttgccgccattgagagaggatagttccta |
35363367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 220 - 359
Target Start/End: Complemental strand, 44177672 - 44177533
Alignment:
| Q |
220 |
ataccatggagtaattaatgcaacaacaccaataggctccttcagaacatggctcttaaaggtatccataggaagggatacaggagccttttgctttgca |
319 |
Q |
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|||||||||||| |||||| |||||||||||||||||||||| |||||||| ||| | || |||||||| ||||| || || |||||||||||||||||| |
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| T |
44177672 |
ataccatggagttattaatccaacaacaccaataggctccttaagaacatgactcctgaatgtatccattggaagagacaccggagccttttgctttgca |
44177573 |
T |
|
| Q |
320 |
tctaacccttcagcaagcccagcatagtactcaaaacaac |
359 |
Q |
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|| || ||||||||| ||||||| |||||||||||| |
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| T |
44177572 |
tccaatttttcagcaagatcagcataaaactcaaaacaac |
44177533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 44178166 - 44178073
Alignment:
| Q |
17 |
agatgccaattcagacggcttcaatattgcagcacaaccagcagccagagctggagcaattttccaagtcgccattaagagaggatagttccta |
110 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||| ||||| || ||||| || | ||||||||||||| |
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| T |
44178166 |
agatgccaattcagatggcttcaatatcgcagcacaaccagcagcaagagcaggagcaaccttccacgtagccatcaacataggatagttccta |
44178073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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