View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_21 (Length: 492)
Name: NF18315_low_21
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 5885560 - 5886036
Alignment:
| Q |
1 |
caacaatggacttagcatcttcgaaggtggtactcccgacaatcgtctagattgggatgtgtcctacatttgtggcaatgatgttcaatttaaaggcacg |
100 |
Q |
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| T |
5885560 |
caacaatggacttagcatcttcgaaggtggtactcccgacaatcgtctagattgggatgtgtcctacatttgtggcaatgatgttcaatttaaaggcacg |
5885659 |
T |
|
| Q |
101 |
ggaaacaacgacacaggtattactattctcgatagaagtcactgataatataaaatccatcaaaggatagaagtataatgcttatgtagtcgagaagaac |
200 |
Q |
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| T |
5885660 |
ggaaacaacgacacaggtattactattctcgatagaagtcactgataatataaaatccatcaaaggatagaagtataatgcttatgtagtagagaagaac |
5885759 |
T |
|
| Q |
201 |
aactaaccagtgtaactaacaattagttacaccaaaagatacgtaagacatatatatagtcgataaaaataaaaactataactagtttaactaactatta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5885760 |
aactaaccagtgtaactaacaattagttacaccaaaagatacgtaagacttatatatagtcgataaaaataaaaactataactagtttaactaactatta |
5885859 |
T |
|
| Q |
301 |
catctaataatctaataataggagatgattggggaggagcacctgacatcgatcacacaaatccgaaagtacaacaagagttatcagattggatgaattg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5885860 |
catctaataatctaataataggagatgattggggaggagcacctgacgtcgatcacacaaatccgaaagtacaacaagagttatcagattggatgaattg |
5885959 |
T |
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| Q |
401 |
gttgaaaacagatgttggttttgttggttggagattcgacatggttgttggatatgctccaaggtttacaaaaaact |
477 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5885960 |
gttgaaaacagatgttggttttgttggttgaatattcgacatggttgttggatatgctccaaggttcacaaaaaact |
5886036 |
T |
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