View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_23 (Length: 476)
Name: NF18315_low_23
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 40667805 - 40667333
Alignment:
| Q |
1 |
agatgtctatgttctcctttgatgcttataccttgaatgacaattagatcccacattcattacaatttgtgagattttgtgtttgggaatgctgcaataa |
100 |
Q |
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| T |
40667805 |
agatgtctatgttctcctttgatgcttataccttgaatgacaattagatcccacattcattacaatttgtgagattttgtgtttgggaatgctgcaataa |
40667706 |
T |
|
| Q |
101 |
cttaaacaggaagaa-tatgaagataaagacggttgcacacaaattactccaaatcgtatgt-gtc-------tttaggttcgcttcgctctcatcagtt |
191 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||||||||||||| |
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| T |
40667705 |
cttaaacaggaagaaatatgaagataaagacggttgcacacaaattactccaaatcgtatgtagacactaagttttaggttcacttcgctctcatcagtt |
40667606 |
T |
|
| Q |
192 |
tgtgcaaactggatgcaaaagggataaccttccaaatttatattttagaaatttctcccacaaattatttataacattccaaaatagtgcacatataaaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40667605 |
tgtgcaaactggatgcaaaagggataaccttccaaatttatattttagaaatttctcccacaaattatttataacattccaaaatagtgcacatataaaa |
40667506 |
T |
|
| Q |
292 |
tgctttgtgaacgttaaaaaattaagaaagggatcctaacctgatttttcatgcttagaagaagacctagaatttaatgaactggtggcatatgaatgca |
391 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40667505 |
tgctttgtgaacgttaaaaatttaagaaagggatcctaacctgatttttcatgcttagaagaagacctagaatgtaatgaactggtggcatatgaatgca |
40667406 |
T |
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| Q |
392 |
ttgaatagctcttaatagtaccagagctatcagaagaagctaaggaatttggataacttttacaagagatgat |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40667405 |
ttgaatagctcttaatagtaccagagctatcagaagaagctaaggaatttggataacttttacaagagatgat |
40667333 |
T |
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