View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_24 (Length: 469)
Name: NF18315_low_24
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_24 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 242665 - 243122
Alignment:
| Q |
1 |
tggttgcttattgcattttcttggtcagtgattaaggatactgttacaccactcaatttgattggttatggacttgcatttttgggggttgcttattata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242665 |
tggttgcttattgcattttcttggtcagtgattaaggatactgttacaccactcaatttgattggttatggacttgcatttttgggggttgcttattata |
242764 |
T |
|
| Q |
101 |
atcactgtaagttggtggcacttaaggcttctgaggtacaaaaggtcagggttcagcaggaagatgattctgaggctgggaaattgttggaagagagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242765 |
atcactgtaagttggtggcacttaaggcttctgaggcacaaaaggtcagggttcagcaggaagatgattctgaggctgggaaattgttggaagagagaga |
242864 |
T |
|
| Q |
201 |
tgggaaagatgatgaagaaagtgcaaagaagaatgagaataggatttgaaatgattgttgatctgatatttggatactgaaattattcttatttacatta |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
242865 |
tgggaaagatgatgaagaaagtacaaagaagaatgagaataggatttgaaatgattgttgacctgatatttggatactgaaattattcttatttacatta |
242964 |
T |
|
| Q |
301 |
ttatgcatgtttgttggtatagtccatgtttggggctgatactatactgatgttatgtcccttttaaattttattgagtttatgaatagagaatgaatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242965 |
ttatgcatgtttgttggtatagtccatgtttggggctgatactatactgatgttatgtcccttttaaattttattgagtttatgaatagagaatgaatta |
243064 |
T |
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| Q |
401 |
ggcattatggatatttaccaaacaaattgtatgttcaaacaatcttatggatgatgat |
458 |
Q |
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| T |
243065 |
ggcattatggatatttaccaaacaaattgtatggtcaaacaatcttatggatgatgat |
243122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 47013917 - 47013814
Alignment:
| Q |
1 |
tggttgcttattgcattttcttggtcagtgattaaggatactgttacaccactcaatttgattggttatggacttgcatttttgggggttgcttattata |
100 |
Q |
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|||||| | |||||||| || ||||| ||||||||||||||||| ||||| | ||||||||||||||||| | || |||||||||||||| ||||||| |
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| T |
47013917 |
tggttgttgattgcattctcgtggtcggtgattaaggatactgtgacaccgattaatttgattggttatgggttggcgtttttgggggttgcgtattata |
47013818 |
T |
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| Q |
101 |
atca |
104 |
Q |
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|||| |
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| T |
47013817 |
atca |
47013814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 49575397 - 49575498
Alignment:
| Q |
28 |
gtgattaaggatactgttacaccactcaatttgattggttatggacttgcatttttgggggttgcttattataatcactgtaagttggtggcacttaagg |
127 |
Q |
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||||||||||||||||||||||| | |||||| |||| ||||| ||||| || ||||| || |||||||||||||| | |||||| ||||||||||| |
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| T |
49575397 |
gtgattaaggatactgttacacccattaatttgtttgggtatggtcttgctttcttgggtgtggcttattataatcattcaaagttgcaggcacttaagg |
49575496 |
T |
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| Q |
128 |
ct |
129 |
Q |
| |
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|| |
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| T |
49575497 |
ct |
49575498 |
T |
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