View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_26 (Length: 465)

Name: NF18315_low_26
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_26
NF18315_low_26
[»] chr7 (30 HSPs)
chr7 (80-450)||(42985124-42985497)
chr7 (221-329)||(3581961-3582069)
chr7 (141-196)||(9689155-9689210)
chr7 (245-311)||(3406652-3406718)
chr7 (141-193)||(3392949-3393001)
chr7 (198-318)||(9419570-9419690)
chr7 (141-193)||(3519790-3519842)
chr7 (215-307)||(5220491-5220583)
chr7 (141-193)||(47710410-47710462)
chr7 (141-193)||(47722066-47722118)
chr7 (143-194)||(44343714-44343765)
chr7 (138-196)||(41190978-41191036)
chr7 (141-182)||(3520105-3520146)
chr7 (80-193)||(40746034-40746150)
chr7 (210-307)||(45615229-45615325)
chr7 (141-193)||(48243126-48243176)
chr7 (210-262)||(18101922-18101974)
chr7 (80-132)||(24432153-24432205)
chr7 (141-193)||(31485489-31485541)
chr7 (141-193)||(35308211-35308263)
chr7 (138-193)||(22574572-22574627)
chr7 (215-269)||(22341432-22341486)
chr7 (142-196)||(28080629-28080683)
chr7 (150-192)||(33834394-33834436)
chr7 (141-194)||(21055018-21055071)
chr7 (141-193)||(2404239-2404291)
chr7 (141-193)||(26239981-26240033)
chr7 (141-181)||(32278950-32278990)
chr7 (141-193)||(36277056-36277108)
chr7 (141-193)||(43688224-43688276)
[»] chr5 (22 HSPs)
chr5 (1-194)||(16703875-16704066)
chr5 (141-194)||(37782115-37782168)
chr5 (141-193)||(13358368-13358420)
chr5 (80-193)||(24269872-24269987)
chr5 (141-193)||(29239881-29239932)
chr5 (141-187)||(15480295-15480341)
chr5 (141-195)||(37656580-37656634)
chr5 (141-193)||(95331-95383)
chr5 (141-193)||(18333530-18333582)
chr5 (132-191)||(16293320-16293379)
chr5 (141-195)||(2063798-2063852)
chr5 (141-191)||(9368799-9368849)
chr5 (132-174)||(37781713-37781754)
chr5 (141-194)||(17017156-17017209)
chr5 (80-193)||(24346502-24346618)
chr5 (144-193)||(24647663-24647712)
chr5 (141-174)||(37657002-37657035)
chr5 (141-193)||(8081179-8081231)
chr5 (141-193)||(9368562-9368614)
chr5 (141-193)||(20510707-20510759)
chr5 (141-193)||(30770330-30770382)
chr5 (141-193)||(33337303-33337355)
[»] chr1 (37 HSPs)
chr1 (209-328)||(12760344-12760463)
chr1 (141-193)||(2859692-2859744)
chr1 (141-193)||(25145550-25145602)
chr1 (205-317)||(25695819-25695930)
chr1 (141-193)||(25713360-25713412)
chr1 (141-193)||(38668327-38668379)
chr1 (141-193)||(8870754-8870806)
chr1 (141-193)||(16163134-16163186)
chr1 (141-193)||(26173521-26173573)
chr1 (141-196)||(11924885-11924940)
chr1 (84-191)||(16162902-16163012)
chr1 (139-193)||(38733349-38733403)
chr1 (139-193)||(52961549-52961603)
chr1 (141-190)||(2859457-2859506)
chr1 (141-193)||(20208591-20208643)
chr1 (141-193)||(35772231-35772283)
chr1 (141-193)||(51459895-51459947)
chr1 (141-193)||(51460147-51460199)
chr1 (205-328)||(10023902-10024025)
chr1 (141-192)||(17412304-17412355)
chr1 (134-193)||(38733119-38733178)
chr1 (141-192)||(39808434-39808485)
chr1 (141-195)||(17402547-17402601)
chr1 (143-193)||(33156936-33156986)
chr1 (139-193)||(34264549-34264603)
chr1 (140-193)||(17412534-17412587)
chr1 (144-193)||(26603395-26603444)
chr1 (80-193)||(27413549-27413665)
chr1 (132-193)||(42586494-42586555)
chr1 (141-193)||(4098467-4098519)
chr1 (141-193)||(25145785-25145837)
chr1 (141-193)||(32952038-32952090)
chr1 (141-189)||(34264775-34264823)
chr1 (141-193)||(35892258-35892310)
chr1 (141-181)||(39348417-39348457)
chr1 (141-193)||(43409774-43409826)
chr1 (139-195)||(51588957-51589013)
[»] chr2 (20 HSPs)
chr2 (201-313)||(35509027-35509139)
chr2 (210-312)||(31069690-31069792)
chr2 (205-318)||(12544818-12544931)
chr2 (141-194)||(17719366-17719419)
chr2 (141-193)||(18607074-18607126)
chr2 (142-193)||(25082603-25082654)
chr2 (133-196)||(40134205-40134268)
chr2 (210-261)||(43342555-43342606)
chr2 (139-193)||(31700811-31700865)
chr2 (141-194)||(94085-94138)
chr2 (141-193)||(16419469-16419521)
chr2 (141-193)||(40379274-40379326)
chr2 (141-193)||(40379509-40379561)
chr2 (141-194)||(12343815-12343868)
chr2 (139-195)||(15124846-15124903)
chr2 (141-193)||(93188-93239)
chr2 (153-193)||(12343686-12343726)
chr2 (141-193)||(16533514-16533566)
chr2 (141-193)||(37770008-37770060)
chr2 (141-193)||(37812333-37812385)
[»] chr6 (21 HSPs)
chr6 (80-196)||(8566960-8567078)
chr6 (77-193)||(12330289-12330407)
chr6 (141-193)||(3680213-3680265)
chr6 (141-193)||(31961145-31961197)
chr6 (144-193)||(6542776-6542825)
chr6 (205-249)||(13006006-13006050)
chr6 (144-195)||(3679977-3680028)
chr6 (197-271)||(26387484-26387556)
chr6 (141-194)||(2753224-2753277)
chr6 (143-193)||(6065942-6065994)
chr6 (141-194)||(24554083-24554136)
chr6 (132-193)||(24554317-24554378)
chr6 (141-194)||(33494505-33494558)
chr6 (141-193)||(6543008-6543060)
chr6 (141-193)||(7638655-7638707)
chr6 (141-193)||(9704987-9705039)
chr6 (141-193)||(9705221-9705273)
chr6 (142-194)||(21214951-21215003)
chr6 (78-191)||(30256782-30256897)
chr6 (133-189)||(30656454-30656510)
chr6 (141-193)||(33494741-33494793)
[»] chr4 (32 HSPs)
chr4 (198-271)||(5769979-5770052)
chr4 (141-196)||(13555532-13555587)
chr4 (141-194)||(400630-400683)
chr4 (205-270)||(6892260-6892325)
chr4 (141-193)||(17111735-17111787)
chr4 (141-193)||(28245591-28245643)
chr4 (215-318)||(22336829-22336932)
chr4 (205-284)||(23971870-23971949)
chr4 (141-193)||(9279194-9279246)
chr4 (141-193)||(31254472-31254524)
chr4 (141-193)||(35645830-35645882)
chr4 (133-196)||(43536527-43536590)
chr4 (197-271)||(5765433-5765507)
chr4 (197-271)||(5767677-5767751)
chr4 (141-193)||(6218406-6218458)
chr4 (141-193)||(21684965-21685017)
chr4 (235-315)||(28793647-28793727)
chr4 (141-193)||(35788626-35788678)
chr4 (141-193)||(50543395-50543447)
chr4 (141-193)||(50543632-50543684)
chr4 (142-193)||(11036577-11036628)
chr4 (205-242)||(2488674-2488711)
chr4 (141-194)||(5846112-5846165)
chr4 (141-189)||(6218175-6218223)
chr4 (141-193)||(11036811-11036863)
chr4 (141-193)||(18528282-18528334)
chr4 (141-193)||(22845512-22845564)
chr4 (141-193)||(22863441-22863493)
chr4 (141-193)||(27634146-27634198)
chr4 (141-193)||(39902628-39902680)
chr4 (141-193)||(45784943-45784995)
chr4 (216-300)||(55504004-55504088)
[»] chr8 (19 HSPs)
chr8 (142-194)||(31197581-31197633)
chr8 (141-193)||(39052602-39052654)
chr8 (141-196)||(39052994-39053049)
chr8 (215-328)||(30869976-30870087)
chr8 (132-193)||(31197814-31197876)
chr8 (141-193)||(36917504-36917556)
chr8 (141-196)||(10449964-10450019)
chr8 (141-194)||(24532486-24532539)
chr8 (196-316)||(37684849-37684969)
chr8 (141-196)||(12317010-12317065)
chr8 (216-318)||(34391292-34391392)
chr8 (141-194)||(3157625-3157678)
chr8 (141-194)||(5590433-5590486)
chr8 (132-193)||(28213159-28213220)
chr8 (141-193)||(422282-422334)
chr8 (141-193)||(3157074-3157126)
chr8 (134-189)||(5675791-5675847)
chr8 (141-193)||(5932014-5932066)
chr8 (141-193)||(11232494-11232546)
[»] chr3 (17 HSPs)
chr3 (141-193)||(34992517-34992569)
chr3 (146-194)||(27086553-27086601)
chr3 (141-193)||(35038259-35038311)
chr3 (141-193)||(35038493-35038545)
chr3 (141-193)||(39620293-39620345)
chr3 (205-261)||(52733483-52733539)
chr3 (215-301)||(27209721-27209807)
chr3 (139-193)||(38791513-38791567)
chr3 (142-195)||(14839803-14839856)
chr3 (213-310)||(22276191-22276287)
chr3 (141-193)||(16239558-16239610)
chr3 (142-193)||(34992808-34992860)
chr3 (141-195)||(13741167-13741222)
chr3 (139-196)||(2123771-2123828)
chr3 (144-193)||(4008652-4008701)
chr3 (141-194)||(22729066-22729119)
chr3 (141-197)||(16927014-16927070)
[»] scaffold0129 (2 HSPs)
scaffold0129 (141-192)||(14506-14557)
scaffold0129 (141-181)||(14282-14322)
[»] scaffold0092 (1 HSPs)
scaffold0092 (141-196)||(5619-5674)
[»] scaffold0001 (1 HSPs)
scaffold0001 (141-192)||(429841-429892)
[»] scaffold0766 (1 HSPs)
scaffold0766 (141-193)||(6241-6293)
[»] scaffold0181 (1 HSPs)
scaffold0181 (140-194)||(20905-20959)
[»] scaffold0519 (1 HSPs)
scaffold0519 (141-193)||(1883-1935)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 80 - 450
Target Start/End: Original strand, 42985124 - 42985497
Alignment:
Q  80 ttagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctc-acttataaacacattgtcaaaccatcacctatctg 176  Q
    ||||||||| ||||||||||||| | ||||||| | |||||  ||||||| ||  ||||| ||| |||||||||||||||||||||||||||| |||| |    
T  42985124 ttagaaattatggttgagtctaacacaacctcacaaaatcgacttgtgaggtgaggattgcctccacttataaacacattgtcaaaccatcacatatccg 42985223  T
Q  177 atgtgagactcttaacaataggtgtcatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcatt 276  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||    
T  42985224 atgtgagactcttaacaataggtgccatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgattataatgttttcttaaaaatcacatt 42985323  T
Q  277 catgaggtgaacttgaccatatccatcaactgaagcacatacttgtccttcctnnnnnnntatgcaagcattttgagatctgcacaaggatcacacaaca 376  Q
    ||||||||||| |||||||||||||||| | ||||||||||  ||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  42985324 catgaggtgaatttgaccatatccatcacccgaagcacatatgtgtccttcctaaaaaaatatgcaagcattttgagatctgcacaaggatcacacaaca 42985423  T
Q  377 gattgttcgattaataatttggtgccaacaaatctccacaaggacaaccgtctaatcttgatctaacaattatc 450  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  42985424 gattgttagattaataattcggtgccatcaaatctccacaaggacaactatctcatcttgatctaacaattatc 42985497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 329
Target Start/End: Original strand, 3581961 - 3582069
Alignment:
Q  221 gatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactgaagcacatactt 320  Q
    ||||||||||||||||||||||  ||||| |||||||||||| |||||||| | |||| |||||||| || |||||||||| |||||  |||||| || |    
T  3581961 gatcccactcatagaaggaacatttgtgaccataatgttttcctaaaaaccactttcaagaggtgaatttaaccatatccaccaactcgagcacaaacgt 3582060  T
Q  321 gtccttcct 329  Q
     ||||||||    
T  3582061 ctccttcct 3582069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 9689155 - 9689210
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||    
T  9689155 cacttataagcacattgtcaaaccatcacctatccgatgtgggactcttaacaata 9689210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 3406652 - 3406718
Alignment:
Q  245 tgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactgaag 311  Q
    |||| ||||||||||||| |||||||| ||| || |||||||| |||||||||||||||||||||||    
T  3406652 tgtgttcataatgttttcctaaaaaccacatccaagaggtgaatttgaccatatccatcaactgaag 3406718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 3393001 - 3392949
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  3393001 cacttataaacacattgtcaggccatcacctatccgatgtgagactcttaaca 3392949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 198 - 318
Target Start/End: Complemental strand, 9419690 - 9419570
Alignment:
Q  198 gtgtcatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccata 297  Q
    ||||||| ||| |||||||| |||||||||||||||||||||| | || ||| |||||| ||||| || ||||| | |  | ||||||||  | ||||||    
T  9419690 gtgtcattacataatgagtttatgatcccactcatagaaggaaaaagtatgaccataatattttcctacaaaccacttcaaagaggtgaatctaaccata 9419591  T
Q  298 tccatcaactgaagcacatac 318  Q
    |||| |||||||| |||||||    
T  9419590 tccaccaactgaaacacatac 9419570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 3519790 - 3519842
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  3519790 cacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 3519842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 307
Target Start/End: Complemental strand, 5220583 - 5220491
Alignment:
Q  215 gttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaact 307  Q
    ||||| |||| || ||||||||||||||||||||  || ||||||||| ||||||||   | || ||||||||||| |||||||||| |||||    
T  5220583 gttcaagatctcaatcatagaaggaacacgtgtggccagaatgttttcctaaaaaccagttccaagaggtgaacttaaccatatccaccaact 5220491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 47710462 - 47710410
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||| |  |||||||||||| ||||||||||||||||||    
T  47710462 cacttataaacacattgtaaggccatcacctatccgatgtgagactcttaaca 47710410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 47722118 - 47722066
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||| |  |||||||||||| ||||||||||||||||||    
T  47722118 cacttataaacacattgtaaggccatcacctatccgatgtgagactcttaaca 47722066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 44343714 - 44343765
Alignment:
Q  143 cttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||| |||||||||||||| ||| | ||||||||||||||||||||||||    
T  44343714 cttatagacacattgtcaaactatctcttatctgatgtgagactcttaacaa 44343765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 41191036 - 41190978
Alignment:
Q  138 tctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    ||||||||||||||| ||||||| |  ||||| ||||||||||| ||||||||||||||    
T  41191036 tctcacttataaacatattgtcagattatcacatatctgatgtgggactcttaacaata 41190978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 3520105 - 3520146
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtga 182  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  3520105 cacttataaacacattgtcagaccatcacctatccgatgtga 3520146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 40746034 - 40746150
Alignment:
Q  80 ttagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctca-cttataaacacattgtcaaaccatcacctatctg 176  Q
    |||||||||||||||| |||||| | || | || | |||||||||||||| ||  ||||||| |  ||||||||||||||||| | ||||  |||||| |    
T  40746034 ttagaaattgtggttgggtctaacacaatcccacaaaatcggtttgtgaggtgaagattgtcccttcttataaacacattgtctagccatgtcctatccg 40746133  T
Q  177 atgtgagactcttaaca 193  Q
    ||||| |||||||||||    
T  40746134 atgtgggactcttaaca 40746150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 45615325 - 45615229
Alignment:
Q  210 aatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaact 307  Q
    ||||||||||||||| ||||||||||||||| | |||||| || || |||||  |||||| |   |||| |||||||| || ||||||||||||||||    
T  45615325 aatgagttcatgatctcactcatagaaggaataggtgtgacca-aaagtttttctaaaaatcattttcaagaggtgaatttaaccatatccatcaact 45615229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 48243126 - 48243176
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||||  ||||||||||| |||||||||||    
T  48243126 cacttataaacacattgtcagaccatca--tatctgatgtgggactcttaaca 48243176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 18101974 - 18101922
Alignment:
Q  210 aatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttc 262  Q
    |||||||| |||||||| ||||||||| ||||| |||||| ||||||||||||    
T  18101974 aatgagtttatgatccccctcatagaaagaacatgtgtgaccataatgttttc 18101922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 24432205 - 24432153
Alignment:
Q  80 ttagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg 132  Q
    ||||||||||||||||||||||||| ||||||| | |||| | ||||||||||    
T  24432205 ttagaaattgtggttgagtctaatacaacctcacaaaatcagcttgtgagatg 24432153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 31485489 - 31485541
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||||| ||||| ||||| |||||||||||    
T  31485489 cacttataaacacattgtcaggccatcacatatcttatgtgggactcttaaca 31485541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 35308211 - 35308263
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||   |||| |||||||||||||||| ||||||||    
T  35308211 cacttataaacacattgtcatgacatctcctatctgatgtgagattcttaaca 35308263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 22574627 - 22574572
Alignment:
Q  138 tctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||| ||| |||| ||||||| |||| |||||| |||||||||||    
T  22574627 tctcacttataaacagattatcaagccatcacatatccgatgtgggactcttaaca 22574572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 22341486 - 22341432
Alignment:
Q  215 gttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaa 269  Q
    |||||||||| ||||||||||||||||| |||||| || ||| |||| |||||||    
T  22341486 gttcatgatcgcactcatagaaggaacaggtgtgaccaaaatctttttttaaaaa 22341432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 28080683 - 28080629
Alignment:
Q  142 acttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    |||||||||||||||||||   |||| | |||| |||||||||||||||||||||    
T  28080683 acttataaacacattgtcaggtcatctcttatccgatgtgagactcttaacaata 28080629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 33834436 - 33834394
Alignment:
Q  150 acacattgtcaaaccatcacctatctgatgtgagactcttaac 192  Q
    ||||||||||| ||||||||||||| |||||| ||||||||||    
T  33834436 acacattgtcagaccatcacctatccgatgtgggactcttaac 33834394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 21055018 - 21055071
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||| |||||||  |||||||||||| ||| || ||||||||||||    
T  21055018 cacttataaacatattgtcaggccatcacctatccgatatgggactcttaacaa 21055071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 2404239 - 2404291
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||| |||| | |||||| |||||||||||    
T  2404239 cacttataaacacattgtcagtccatctcctaaccgatgtgggactcttaaca 2404291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 26239981 - 26240033
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||  |||||| |||||  |||||||||||    
T  26239981 cacttataaacacattgtcagaccatgtcctatccgatgtcggactcttaaca 26240033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 32278950 - 32278990
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtg 181  Q
    |||||||||||||||||||| |||||||| |||| ||||||    
T  32278950 cacttataaacacattgtcagaccatcacatatccgatgtg 32278990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 36277056 - 36277108
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| || ||  | | |||||||||||||||||||||    
T  36277056 cacttataaacacattgtcagactatgccatgtctgatgtgagactcttaaca 36277108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 43688224 - 43688276
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  |||||| |||||| |||||||||||    
T  43688224 cacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 43688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 3e-67; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 16703875 - 16704066
Alignment:
Q  1 tgctctacaatctacatgtttggacatagctatatgacacttgtttggtaaaatttaacgaataattgataaactattattagaaattgtggttgagtct 100  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| || | ||||||||| ||    
T  16703875 tgctcgacaatctacatgtt-ggacataggtatatgacacttgtttggtaaaatttaaccaataattgataaactattcttacaa-tcgtggttgagcct 16703972  T
Q  101 aatataacctcatataatcggtttgtgagatggattgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  16703973 aatataacctcacagaatcggtttgtgagatggattgtctcacttataaacacattgttaaaccatctcctatctaatgtgagactcttaacaa 16704066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 37782115 - 37782168
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||||||||||| ||||||||||||| ||| ||||||| |||||||    
T  37782115 cacttataaacacattgtcagaccatcacctatccgatatgagactattaacaa 37782168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 13358420 - 13358368
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  | ||| |||||||||||||||||||||||||    
T  13358420 cacttataaacacattgtcagccaatctcctatctgatgtgagactcttaaca 13358368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 24269872 - 24269987
Alignment:
Q  80 ttagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctcacttataaacacattgtcaaaccatcacctatctga 177  Q
    |||||||||||||||||| |||| | |||| |||| || ||| ||||||| ||  ||||  | ||||||||||||||||||||  ||||  |||||| ||    
T  24269872 ttagaaattgtggttgagcctaacacaaccccataaaaccggcttgtgaggtgaggattaccccacttataaacacattgtcaggccatgtcctatccga 24269971  T
Q  178 tgtgagactcttaaca 193  Q
    |||| |||||||||||    
T  24269972 tgtgggactcttaaca 24269987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 29239932 - 29239881
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  29239932 cacttataaacacattgtcagac-atcacctatcagatgtgagactcttaaca 29239881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 15480341 - 15480295
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactc 187  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||    
T  15480341 cacttataaacacattgtcagaccatcacctatccgatgtgggactc 15480295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 37656634 - 37656580
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaat 195  Q
    |||||||||||||||||||| ||||| ||||||| || ||| |||||||||||||    
T  37656634 cacttataaacacattgtcagaccattacctatccgacgtgggactcttaacaat 37656580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 95331 - 95383
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||   ||||||||||| |||||| |||||||||||    
T  95331 cacttataaacacattgtcaggtcatcacctatccgatgtgtgactcttaaca 95383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 18333530 - 18333582
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||| |||||| |||||| || ||||||||    
T  18333530 cacttataaacacattgtcagaccatctcctatccgatgtgggattcttaaca 18333582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 191
Target Start/End: Complemental strand, 16293379 - 16293320
Alignment:
Q  132 ggattgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaa 191  Q
    |||||| | |||||||||||||||||| | | |||| ||||| |||||||||||||||||    
T  16293379 ggattgccccacttataaacacattgttagatcatcccctatttgatgtgagactcttaa 16293320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 2063798 - 2063852
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaat 195  Q
    |||||||||||||||||||| |||||   ||||| |||||| |||||||||||||    
T  2063798 cacttataaacacattgtcagaccatgttctatccgatgtgggactcttaacaat 2063852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 9368849 - 9368799
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaa 191  Q
    ||||||||||||||||||||  ||||| |||||| |||||| |||||||||    
T  9368849 cacttataaacacattgtcatgccatctcctatccgatgtgggactcttaa 9368799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 37781754 - 37781713
Alignment:
Q  132 ggattgtctcacttataaacacattgtcaaaccatcacctatc 174  Q
    |||||||| |||||||||||||||||||| |||||||||||||    
T  37781754 ggattgtc-cacttataaacacattgtcagaccatcacctatc 37781713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 17017156 - 17017209
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||||||||||||||||| | |||||  ||||||||| || ||||||||||||    
T  17017156 cacttataaacacattgtcgagccatcttctatctgatatgggactcttaacaa 17017209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 24346502 - 24346618
Alignment:
Q  80 ttagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctc-acttataaacacattgtcaaaccatcacctatctg 176  Q
    |||||||||||||||||| |||| | |||| |||| || ||| ||||||| ||  ||||  | | |||||||||||||||||||  ||||  |||||| |    
T  24346502 ttagaaattgtggttgagcctaacacaaccccataaaaccggcttgtgaggtgaggattacccccacttataaacacattgtcaggccatgtcctatccg 24346601  T
Q  177 atgtgagactcttaaca 193  Q
    ||||| |||||||||||    
T  24346602 atgtgggactcttaaca 24346618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 24647712 - 24647663
Alignment:
Q  144 ttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||   |||||||||||| |||||| |||||||||||    
T  24647712 ttataaacacattgtccggccatcacctatccgatgtgggactcttaaca 24647663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 37657002 - 37657035
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatc 174  Q
    |||||||||||||||||||| |||||||||||||    
T  37657002 cacttataaacacattgtcagaccatcacctatc 37657035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 8081179 - 8081231
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  |||||| |||||| |||||||||||    
T  8081179 cacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 8081231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 9368614 - 9368562
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||| |||||| |||||  |||||||||||    
T  9368614 cacttataaacacattgtcacgccatctcctatccgatgtatgactcttaaca 9368562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 20510707 - 20510759
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||| |||||||  |||||||||||| |||||| | |||||||||    
T  20510707 cacttataaacatattgtcaggccatcacctatccgatgtggggctcttaaca 20510759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 30770330 - 30770382
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||| ||||  ||||||  | |||||||||||||||    
T  30770330 cacttataaacacattgtcaagccatgtcctatccaaagtgagactcttaaca 30770382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 33337303 - 33337355
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||| |||||||  ||||||||||||  ||||| |||||||||||    
T  33337303 cacttataaacatattgtcaggccatcacctatccaatgtgggactcttaaca 33337355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 209 - 328
Target Start/End: Complemental strand, 12760463 - 12760344
Alignment:
Q  209 gaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactg 308  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||| | | || |||||||| || || |||||||  |||||    
T  12760463 gaatgagttcatgatcccgctcatagaaggaacaaatgtgatcataatgttttcttaaaaaccacttccaagaggtgaatttaacaatatccactaactg 12760364  T
Q  309 aagcacatacttgtccttcc 328  Q
     |||||| || | |||||||    
T  12760363 gagcacaaacgtctccttcc 12760344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 2859692 - 2859744
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  2859692 cactaataaacacattgtcagaccatcacctatccgatgtgagactcttaaca 2859744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 25145550 - 25145602
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  25145550 cactaataaacacattgtcagaccatcacctatccgatgtgagactcttaaca 25145602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 317
Target Start/End: Original strand, 25695819 - 25695930
Alignment:
Q  205 cacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatca 304  Q
    |||| |||||||||||||||| |||||||||||| ||| |||||| |||||||||||| |||||||| | | || || ||||| || || |||||||  |    
T  25695819 cacataatgagttcatgatcc-actcatagaaggtacaggtgtgaccataatgttttcctaaaaacctcttccaagatgtgaatttaactatatccacaa 25695917  T
Q  305 actgaagcacata 317  Q
    |||| ||||||||    
T  25695918 actggagcacata 25695930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 25713412 - 25713360
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  25713412 cacttataaacacattgtcagaccatcacctatccgatgtgggactcttaaca 25713360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 38668379 - 38668327
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  38668379 cacttataaacacattgtcaaaccatcacatatccgatgtgggactcttaaca 38668327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 8870754 - 8870806
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| ||||||||| ||| |||||| |||||||||||    
T  8870754 cacttataaacacattgtcacaccatcaccgatccgatgtgggactcttaaca 8870806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 16163186 - 16163134
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||||  ||||||||||| |||||| |||||||||||    
T  16163186 cacttataaacacattgtcaagtcatcacctatccgatgtgggactcttaaca 16163134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 26173521 - 26173573
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||| | ||||||||||| |||||||||||    
T  26173521 cacttataaacacattgtcagaccatctcatatctgatgtgggactcttaaca 26173573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 11924940 - 11924885
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    |||||||||||| ||||||| ||||||||||||| ||||||  |||||||||||||    
T  11924940 cacttataaacatattgtcagaccatcacctatccgatgtgtaactcttaacaata 11924885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 16163012 - 16162902
Alignment:
Q  84 aaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctc-acttataaacacattgtcaaaccatcacctatctgatgt 180  Q
    ||||||||||||||||||| | |||| || | ||||||||| |||| ||  | ||||| | ||||| |||||||||||||  ||||||| |||| |||||    
T  16163012 aaattgtggttgagtctaacacaaccccacaaaatcggtttatgaggtgaggtttgtccccacttaaaaacacattgtcaggccatcacatatccgatgt 16162913  T
Q  181 gagactcttaa 191  Q
    |||||||||||    
T  16162912 gagactcttaa 16162902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 38733403 - 38733349
Alignment:
Q  139 ctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||| ||||||| |||||||| |||| |||||| |||||||||||    
T  38733403 ctcacttataaacatattgtcagaccatcacatatccgatgtgggactcttaaca 38733349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 52961603 - 52961549
Alignment:
Q  139 ctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||||| |||||| |||||| |||||| ||| |||||||    
T  52961603 ctcacttataaacacattgtcagaccatctcctatccgatgtgggacacttaaca 52961549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 2859457 - 2859506
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactctta 190  Q
    ||||||||||||||||||||  |||||||||||| |||||| ||||||||    
T  2859457 cacttataaacacattgtcaggccatcacctatccgatgtgggactctta 2859506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 20208591 - 20208643
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||  |||||| |||||| |||||||||||    
T  20208591 cacttataaacacattgtcagaccatgtcctatccgatgtgggactcttaaca 20208643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 35772283 - 35772231
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||| |||||| |||||| |||||||||||    
T  35772283 cacttataaacacattgtcaggccatctcctatccgatgtgggactcttaaca 35772231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 51459895 - 51459947
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||| |  |||||||||||| |||||| |||||||||||    
T  51459895 cacttataaacacattgttaggccatcacctatccgatgtgggactcttaaca 51459947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 51460147 - 51460199
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||| |  |||||||||||| |||||| |||||||||||    
T  51460147 cacttataaacacattgttaggccatcacctatccgatgtgggactcttaaca 51460199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 10024025 - 10023902
Alignment:
Q  205 cacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatca 304  Q
    |||| |||| |||||||||| ||||||||||||||||| | |||   | |||||||||  ||||||| | || | |||||||| || ||||||||||  |    
T  10024025 cacataatgtgttcatgatcacactcatagaaggaacatgcgtggctagaatgttttcccaaaaaccacctttaagaggtgaatttaaccatatccacga 10023926  T
Q  305 actgaagcacatacttgtccttcc 328  Q
    |||| |||||| || | |||||||    
T  10023925 actggagcacaaacgtctccttcc 10023902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 17412355 - 17412304
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaac 192  Q
    |||||||||||||||| ||| || ||| |||||| |||||||||||||||||    
T  17412355 cacttataaacacattatcagacaatctcctatccgatgtgagactcttaac 17412304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 38733178 - 38733119
Alignment:
Q  134 attgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||| |||||||||||||||||||| |||||||| |||  ||||||  ||||||||||    
T  38733178 attgtcccacttataaacacattgtcagaccatcacatattcgatgtggaactcttaaca 38733119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 39808485 - 39808434
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaac 192  Q
    |||||||||||||||||||| |||||||| ||||  ||||| ||||||||||    
T  39808485 cacttataaacacattgtcagaccatcacatatccaatgtgggactcttaac 39808434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 17402601 - 17402547
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaat 195  Q
    ||||| |||||| ||||||| ||||||||||||| |||||| ||||| |||||||    
T  17402601 cacttttaaacaaattgtcagaccatcacctatccgatgtgggactcataacaat 17402547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 33156986 - 33156936
Alignment:
Q  143 cttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||| |||||| |||||| ||||||  ||||||||||    
T  33156986 cttataaacacattgtcagaccatctcctatccgatgtggaactcttaaca 33156936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 34264549 - 34264603
Alignment:
Q  139 ctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||| ||||||||| | |||| | |||||||||||||| ||||||||    
T  34264549 ctcacttataaatacattgtcagatcatctcttatctgatgtgagattcttaaca 34264603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 17412587 - 17412534
Alignment:
Q  140 tcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||||   |||| ||||||||||||| |||| ||||||    
T  17412587 tcacttataaacacattgtcaggtcatctcctatctgatgtgggacttttaaca 17412534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 26603444 - 26603395
Alignment:
Q  144 ttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||| ||||||| |||||| |||||  ||||||||||||||||||    
T  26603444 ttataaacatattgtcagaccatctcctattcgatgtgagactcttaaca 26603395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 27413665 - 27413549
Alignment:
Q  80 ttagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctc-acttataaacacattgtcaaaccatcacctatctg 176  Q
    ||||||||  |||||||| |||| | ||||||||| || || |||||||| ||  ||||| ||| ||||||||||| |||||||  |||||||||||  |    
T  27413665 ttagaaatcatggttgagcctaacacaacctcataaaaccgatttgtgaggtgaggattgcctccacttataaacatattgtcaggccatcacctatgcg 27413566  T
Q  177 atgtgagactcttaaca 193  Q
    ||||| |||| ||||||    
T  27413565 atgtgggacttttaaca 27413549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 42586494 - 42586555
Alignment:
Q  132 ggattgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||| | |||||||| |||||||||||  ||||| | |||| ||||||||||||||||||    
T  42586494 ggattgccccacttatatacacattgtcaggccatctcttatccgatgtgagactcttaaca 42586555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 4098467 - 4098519
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||| ||||||||||   |||| |||||| |||||||||||    
T  4098467 cacttataaacacattatcaaaccatctattatccgatgtgcgactcttaaca 4098519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 25145785 - 25145837
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||| ||||| |||||||||   ||||||||||| ||||||||||||||||||    
T  25145785 cactaataaatacattgtcaggtcatcacctatccgatgtgagactcttaaca 25145837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 32952090 - 32952038
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||||||| | ||||||  ||||| || ||||||||    
T  32952090 cacttataaacacattgtcaaaccaactcctatccaatgtgggattcttaaca 32952038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 34264775 - 34264823
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactctt 189  Q
    |||||||||||||||||||| ||| || ||||||| ||||| |||||||    
T  34264775 cacttataaacacattgtcagaccgtctcctatctcatgtgtgactctt 34264823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 35892310 - 35892258
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||| ||||||||| ||||||   ||||||||||| |||||||||||    
T  35892310 cacttataaatacattgtcagaccatcttatatctgatgtgggactcttaaca 35892258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 39348417 - 39348457
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtg 181  Q
    ||||||||||||| ||||||| ||||| |||||||||||||    
T  39348417 cacttataaacacgttgtcaagccatctcctatctgatgtg 39348457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 43409826 - 43409774
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||| ||||||||| |||||   ||||| ||||||||||||||||||    
T  43409826 cacttataaatacattgtcagaccatgttctatccgatgtgagactcttaaca 43409774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 195
Target Start/End: Complemental strand, 51589013 - 51588957
Alignment:
Q  139 ctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaat 195  Q
    |||||||||||||| ||||||| |||| | |||| | |||||| |||||||||||||    
T  51589013 ctcacttataaacaaattgtcagaccaactcctaaccgatgtgggactcttaacaat 51588957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 201 - 313
Target Start/End: Complemental strand, 35509139 - 35509027
Alignment:
Q  201 tcatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatcc 300  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||| || ||||||||| |||||||| |   || |||||| | || |||||||||    
T  35509139 tcatcacataatgagttcatgatcccactcatagaaggaacatgtgtgaccacaatgttttcctaaaaaccacgcccaagaggtggatttaaccatatcc 35509040  T
Q  301 atcaactgaagca 313  Q
    | ||| |||||||    
T  35509039 accaattgaagca 35509027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 31069792 - 31069690
Alignment:
Q  210 aatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactga 309  Q
    ||||||||||||||| ||||||||||||||||| |||| | || ||||||||| |||||||  | |||| |||||||| || ||||||||||||| ||||    
T  31069792 aatgagttcatgatctcactcatagaaggaacatgtgtaaccagaatgttttcctaaaaactactttcaagaggtgaatttaaccatatccatcatctga 31069693  T
Q  310 agc 312  Q
    |||    
T  31069692 agc 31069690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 205 - 318
Target Start/End: Original strand, 12544818 - 12544931
Alignment:
Q  205 cacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatca 304  Q
    |||| |||| ||||||||||||| |||||||||||||||||| || |||||| ||||| |||||||| | | || ||| |||| || |||||||||| ||    
T  12544818 cacataatgggttcatgatcccattcatagaaggaacacgtgcgaccataatattttcctaaaaaccacttccaagagatgaatttaaccatatccacca 12544917  T
Q  305 actgaagcacatac 318  Q
    |||| |||||||||    
T  12544918 actggagcacatac 12544931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 17719419 - 17719366
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||||||||||||||||||  |||||||||||| |||||| ||||||||||||    
T  17719419 cacttataaacacattgtcaggccatcacctatccgatgtgggactcttaacaa 17719366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 18607074 - 18607126
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||| ||||    
T  18607074 cactaataaacacattgtcaggccatcacctatctgatgtgagactctaaaca 18607126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 25082603 - 25082654
Alignment:
Q  142 acttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||| |||||| | |||||||| ||||||||||||||    
T  25082603 acttataaacacattgtcagaccatctcttatctgatatgagactcttaaca 25082654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 40134268 - 40134205
Alignment:
Q  133 gattgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    ||||||| |||||||||||||||   ||||||||| ||||||||||||  ||||||||||||||    
T  40134268 gattgtcccacttataaacacatcaccaaaccatctcctatctgatgttggactcttaacaata 40134205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 43342606 - 43342555
Alignment:
Q  210 aatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgtttt 261  Q
    ||||| || |||||| |||||||||||| |||||||||||||||||||||||    
T  43342606 aatgattttatgatctcactcatagaagaaacacgtgtgatcataatgtttt 43342555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 31700811 - 31700865
Alignment:
Q  139 ctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||||  |||||||||||| ||||||  ||||||||||    
T  31700811 ctcacttataaacacattgtcaggccatcacctatccgatgtgtaactcttaaca 31700865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 94085 - 94138
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||||| |||||  |||||||||||| |||||| ||||||||||||    
T  94085 cacttataaacacactgtcaggccatcacctatccgatgtgggactcttaacaa 94138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 16419521 - 16419469
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||  |||||| |||||| |||||||||||    
T  16419521 cacttataaacacattgtcagaccatgtcctatccgatgtgggactcttaaca 16419469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 40379274 - 40379326
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||| |||||  |||||||||||| |||||| |||||||||||    
T  40379274 cacttataaacacactgtcaggccatcacctatccgatgtgggactcttaaca 40379326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 40379509 - 40379561
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||| |||||  |||||||||||| |||||| |||||||||||    
T  40379509 cacttataaacacactgtcaggccatcacctatccgatgtgggactcttaaca 40379561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 12343815 - 12343868
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||||||| |||||||||  |||||| |||||| |||||| ||||||||||||    
T  12343815 cacttataagcacattgtctgaccatctcctatccgatgtgggactcttaacaa 12343868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 15124846 - 15124903
Alignment:
Q  139 ctcacttataaacacattgtcaaaccatcaccta-tctgatgtgagactcttaacaat 195  Q
    |||||||||||||||| ||||| |||||  | || |||||||||||||||||||||||    
T  15124846 ctcacttataaacacactgtcataccatgtcttaatctgatgtgagactcttaacaat 15124903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 93188 - 93239
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  | |||||||||| |||||| |||||||||||    
T  93188 cacttataaacacattgtcaggc-atcacctatccgatgtgggactcttaaca 93239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 12343686 - 12343726
Alignment:
Q  153 cattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||| |||||| |||||| |||||||||||    
T  12343686 cattgtcaaaccatctcctatccgatgtgggactcttaaca 12343726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 16533566 - 16533514
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| | |||  |||||||||||    
T  16533566 cacttataaacacattgtcaggccatcacctatccggtgtaggactcttaaca 16533514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 37770008 - 37770060
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||| |||||||||||| | |||| | |||||| |||||||||||    
T  37770008 cacttataaacaaattgtcaaaccaactcctaaccgatgtgggactcttaaca 37770060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 37812333 - 37812385
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  |||||| |||||| |||||||||||    
T  37812333 cacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 37812385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 8566960 - 8567078
Alignment:
Q  80 ttagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctcacttataaacacattgtcaaaccatcacctatctga 177  Q
    |||||||| ||||||| | |||| | |||| || | || ||||||||||| ||  ||||||| |||||||||||||||||||| ||||||||||||| ||    
T  8566960 ttagaaatcgtggttgggcctaacacaaccccacaaaaccggtttgtgaggtgaggattgtcccacttataaacacattgtcagaccatcacctatccga 8567059  T
Q  178 tgtgagactcttaacaata 196  Q
     ||| ||||||||||||||    
T  8567060 ggtgggactcttaacaata 8567078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 12330289 - 12330407
Alignment:
Q  77 ttattagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctcacttataaacacattgtcaaaccatcacctatc 174  Q
    ||||||||||| ||||||| | |||| | ||||||| | || ||| ||||||||||  ||||| | |||||||||||||||||||| |||||  ||||||    
T  12330289 ttattagaaatcgtggttgggcctaacacaacctcacaaaaccggcttgtgagatgaggattgccccacttataaacacattgtcagaccatgtcctatc 12330388  T
Q  175 tgatgtgagactcttaaca 193  Q
     |||||| |||||||||||    
T  12330389 cgatgtgggactcttaaca 12330407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 3680265 - 3680213
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||||| |||| |||||| |||||||||||    
T  3680265 cacttataaacacattgtcagaccatcacatatccgatgtgggactcttaaca 3680213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 31961197 - 31961145
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  31961197 cacttataaacacattgtcaggccatcacatatctgatgtgggactcttaaca 31961145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 6542776 - 6542825
Alignment:
Q  144 ttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||| ||||||| |||||| |||||| ||||||||||||||||||    
T  6542776 ttataaacagattgtcagaccatctcctatccgatgtgagactcttaaca 6542825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 13006050 - 13006006
Alignment:
Q  205 cacagaatgagttcatgatcccactcatagaaggaacacgtgtga 249  Q
    |||||||||||||||||||||| ||| ||||||||||| ||||||    
T  13006050 cacagaatgagttcatgatccctctcttagaaggaacatgtgtga 13006006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 3680028 - 3679977
Alignment:
Q  144 ttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaat 195  Q
    ||||||||||||||||| || ||||| |||| || |||||||||||||||||    
T  3680028 ttataaacacattgtcagactatcacttatccgacgtgagactcttaacaat 3679977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 26387484 - 26387556
Alignment:
Q  197 ggtgtcatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaacc 271  Q
    ||||||| || | |||||||||||||||||||||||| |||  ||| ||||||||||||| ||||  ||||||||    
T  26387484 ggtgtcaacataaaatgagttcatgatcccactcataaaag--acaagtgtgatcataatatttttctaaaaacc 26387556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 2753277 - 2753224
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||||||||||| | ||||| || || |||||| ||||||||||||    
T  2753277 cacttataaacacattgtcagatcatcatctttccgatgtgggactcttaacaa 2753224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 6065994 - 6065942
Alignment:
Q  143 cttataaacacattgtcaaaccatcacctatctg--atgtgagactcttaaca 193  Q
    |||||||||||||||||| |||||||| ||||||  ||||| |||||||||||    
T  6065994 cttataaacacattgtcagaccatcacatatctgatatgtgggactcttaaca 6065942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 24554136 - 24554083
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||| | ||||||| |||||| |||||| |||||| ||||||||||||    
T  24554136 cacttataaatatattgtcagaccatctcctatccgatgtgggactcttaacaa 24554083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 24554378 - 24554317
Alignment:
Q  132 ggattgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||| | |||| ||||| ||||||| |||||||| | ||||||||||| |||||||||||    
T  24554378 ggattgccccactaataaatacattgttaaaccatctcatatctgatgtgtgactcttaaca 24554317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 33494558 - 33494505
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||| ||| |||| ||||| |||||| |||||| ||||||||||||    
T  33494558 cacttataaacatattttcaagccatctcctatccgatgtgggactcttaacaa 33494505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 6543008 - 6543060
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||| | |||| ||||||  ||||||||||    
T  6543008 cacttataaacacattgtcagaccatctcttatccgatgtggaactcttaaca 6543060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 7638655 - 7638707
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||| |||   |||| ||||||||| |||||||||||||||    
T  7638655 cacttataaacacattatcaggtcatctcctatctgacgtgagactcttaaca 7638707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 9705039 - 9704987
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  | ||  |||||| ||||||||||||||||||    
T  9705039 cacttataaacacattgtcaggctatgtcctatccgatgtgagactcttaaca 9704987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 9705273 - 9705221
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||| || ||||  |||||| |||||| |||||||||||    
T  9705273 cacttataaacacattgttaagccatgtcctatccgatgtgggactcttaaca 9705221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 21215003 - 21214951
Alignment:
Q  142 acttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||||||||||||||| | ||||||||||||  || ||| ||||||||||||    
T  21215003 acttataaacacattgtgagaccatcacctattcgacgtgtgactcttaacaa 21214951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 30256897 - 30256782
Alignment:
Q  78 tattagaaattgtggttgagtctaatataacctcatataatcggtttgtgagatg--gattgtctcacttataaacacattgtcaaaccatcacctatct 175  Q
    |||||||||| ||||||| | |||| | |||| || | || ||| ||||||| ||  ||||| | |||||||||||| |||||||   |||||||||||     
T  30256897 tattagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgccccacttataaacatattgtcaggtcatcacctatcc 30256798  T
Q  176 gatgtgagactcttaa 191  Q
    |||||| |||||||||    
T  30256797 gatgtgggactcttaa 30256782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 30656454 - 30656510
Alignment:
Q  133 gattgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactctt 189  Q
    ||||||||||||||||||   ||||||| |||||| | |||| ||||||||||||||    
T  30656454 gattgtctcacttataaatttattgtcagaccatctcttatcagatgtgagactctt 30656510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 33494793 - 33494741
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||| | ||||||| |||||| |||||| |||||| |||||||||||    
T  33494793 cacttataaatatattgtcagaccatctcctatccgatgtgggactcttaaca 33494741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 5769979 - 5770052
Alignment:
Q  198 gtgtcatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaacc 271  Q
    |||||| || |||||| ||||||||||||| |||||||||||||| |||||| |||||||||||| ||||||||    
T  5769979 gtgtcaacatagaatgtgttcatgatcccaatcatagaaggaacaagtgtgaccataatgttttcataaaaacc 5770052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 13555532 - 13555587
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    ||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||    
T  13555532 cacttataagcacattgtcaaaccatcacctatccgatgtgggactcttaacaata 13555587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 400630 - 400683
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  400630 cacttataaacacattgtcagaccatctcatatctgatgtgagactcttaacaa 400683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 6892260 - 6892325
Alignment:
Q  205 cacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaac 270  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||  | ||||||||| |||||||    
T  6892260 cacataatgagttcatgatcccactcatagaaggaacatgtgtgacaagaatgttttcctaaaaac 6892325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 17111787 - 17111735
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  17111787 cacttataaacacattgtcaggccatcacctatctgatgtgggactcttaaca 17111735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 28245591 - 28245643
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  28245591 cacttataaacacattgtcaggccatcacctatccgatgtgagactcttaaca 28245643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 318
Target Start/End: Original strand, 22336829 - 22336932
Alignment:
Q  215 gttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactgaagcac 314  Q
    |||||||||||| |||||||||||||||   ||||| ||||||||||  ||||| || | | ||  |||||||||| |||||||||| |||||| |||||    
T  22336829 gttcatgatcccgctcatagaaggaacagacgtgattataatgtttttctaaaatccacttccaataggtgaacttaaccatatccaccaactggagcac 22336928  T
Q  315 atac 318  Q
    ||||    
T  22336929 atac 22336932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 23971949 - 23971870
Alignment:
Q  205 cacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggt 284  Q
    |||| |||| ||||||||||||||||||||||| |||| ||| || |||||||||||| |||||||| | |||| |||||    
T  23971949 cacataatgggttcatgatcccactcatagaagaaacaagtgggaccataatgttttcctaaaaaccactttcaagaggt 23971870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 9279246 - 9279194
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  9279246 cacttataaacacattgtcaggccatcacctatccgatgtgcgactcttaaca 9279194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 31254472 - 31254524
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  31254472 cacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 31254524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 35645830 - 35645882
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| ||||||||||||  |||||| |||||||||||    
T  35645830 cacttataaacacattgtcagaccatcacctattcgatgtgggactcttaaca 35645882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 43536590 - 43536527
Alignment:
Q  133 gattgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||   |||||| |||||||||||    
T  43536590 gattgtcccacttataaacacattgtcaaactatctcctatcttccgtgagattcttaacaata 43536527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 5765433 - 5765507
Alignment:
Q  197 ggtgtcatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaacc 271  Q
    ||||||| || |||||| ||||||||||||| | |||||||||||| | |||| || ||||||||| ||||||||    
T  5765433 ggtgtcaacatagaatgtgttcatgatcccaattatagaaggaacaagggtgaccacaatgttttcataaaaacc 5765507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 5767677 - 5767751
Alignment:
Q  197 ggtgtcatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaacc 271  Q
    ||||||| || |||||| ||||||||||||| | |||||||||||| | |||| || ||||||||| ||||||||    
T  5767677 ggtgtcaacatagaatgtgttcatgatcccaattatagaaggaacaagggtgaccacaatgttttcataaaaacc 5767751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 6218458 - 6218406
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||| |   |||| |||||||||||||||||||||||||    
T  6218458 cacttataaacacattgttaggtcatctcctatctgatgtgagactcttaaca 6218406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 21685017 - 21684965
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  |||||| ||||||||||||||||||    
T  21685017 cacttataaacacattgtcaggccatgtcctatccgatgtgagactcttaaca 21684965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 315
Target Start/End: Complemental strand, 28793727 - 28793647
Alignment:
Q  235 aaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactgaagcaca 315  Q
    |||||||| |||||||   ||||||||| |||||||| | || | ||||||||||| |||||||||| ||| |||||||||    
T  28793727 aaggaacatgtgtgatagaaatgttttcctaaaaaccacttttaagaggtgaacttaaccatatccaccaattgaagcaca 28793647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 35788678 - 35788626
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  ||||||||||||| |||||||||||    
T  35788678 cacttataaacacattgtcaggccatgtcctatctgatgtgggactcttaaca 35788626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 50543395 - 50543447
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||| ||||||||||| ||||||||||||| |||||| | |||||||||    
T  50543395 cacttatacacacattgtcagaccatcacctatccgatgtggggctcttaaca 50543447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 50543632 - 50543684
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||| |||||||||||  |||||||||||| |||||| |||||||||||    
T  50543632 cacttatacacacattgtcaggccatcacctatccgatgtgggactcttaaca 50543684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 11036577 - 11036628
Alignment:
Q  142 acttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||   ||||||||||||||| || |||||||||||    
T  11036577 acttataaacacattgtcatgtcatcacctatctgatttgggactcttaaca 11036628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 242
Target Start/End: Complemental strand, 2488711 - 2488674
Alignment:
Q  205 cacagaatgagttcatgatcccactcatagaaggaaca 242  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  2488711 cacagaatgggttcatgatcccactcatataaggaaca 2488674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 5846165 - 5846112
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||| ||||||| |||| | |||| | |||||||||||||||||||    
T  5846165 cacttataaacaaattgtcagaccaactcctaaccgatgtgagactcttaacaa 5846112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 6218223 - 6218175
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactctt 189  Q
    |||||||||||| ||||| || ||||| |||||| ||||||||||||||    
T  6218223 cacttataaacatattgtgaagccatctcctatccgatgtgagactctt 6218175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 11036811 - 11036863
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| |||||   ||||||||||    
T  11036811 cacttataaacacattgtcaggccatcacctatccgatgttgtactcttaaca 11036863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 18528282 - 18528334
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||| ||  ||||| | ||| |||||||||||||||||||    
T  18528282 cacttataaacacattgccatgccatctcgtatttgatgtgagactcttaaca 18528334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 22845512 - 22845564
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  | ||||||||||| |||||||||||    
T  22845512 cacttataaacacattgtcaggccatgtcatatctgatgtgggactcttaaca 22845564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 22863493 - 22863441
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||  || || ||||||||||||||||||    
T  22863493 cacttataaacacattgtcaggccatcttctgtccgatgtgagactcttaaca 22863441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 27634146 - 27634198
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  |||||| |||||| |||||||||||    
T  27634146 cacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 27634198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 39902628 - 39902680
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  |||||| |||||| |||||||||||    
T  39902628 cacttataaacacattgtcaggccatgtcctatccgatgtgggactcttaaca 39902680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 45784943 - 45784995
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||| | ||||||  ||||||||||| |||||| |||||||||||    
T  45784943 cacttataaacatactgtcaagtcatcacctatccgatgtgggactcttaaca 45784995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 55504004 - 55504088
Alignment:
Q  216 ttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatcc 300  Q
    ||||||||| ||||| |||||||||||||||  | || |||||||| ||||||||| |  ||| |||||||| || || ||||||    
T  55504004 ttcatgatctcactcttagaaggaacacgtgcaaccaaaatgtttttttaaaaaccactctcaagaggtgaatttaacaatatcc 55504088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 31197633 - 31197581
Alignment:
Q  142 acttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||||||    
T  31197633 acttataaacacattgtcagaccatcacctatctgatgtaggactcttaacaa 31197581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 39052602 - 39052654
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  39052602 cacttataaacacattgtcaggccatcacctatctgatgtgggactcttaaca 39052654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 39052994 - 39053049
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    ||||||||||||||||||||  |||||||||||| |||||| ||||||||||||||    
T  39052994 cacttataaacacattgtcaggccatcacctatccgatgtgggactcttaacaata 39053049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 328
Target Start/End: Complemental strand, 30870087 - 30869976
Alignment:
Q  215 gttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactgaagcac 314  Q
    ||||||||||||||||||| |||||| | ||||||   |||||||||| |||||||| | || | ||||||||||| |||||||||| ||| || |||||    
T  30870087 gttcatgatcccactcatataaggaaaaggtgtgac--taatgttttcgtaaaaaccacttttaagaggtgaacttaaccatatccaccaattggagcac 30869990  T
Q  315 atacttgtccttcc 328  Q
    | || | |||||||    
T  30869989 aaacgtctccttcc 30869976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 31197876 - 31197814
Alignment:
Q  132 ggattgtctc-acttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||| ||||| |||||||||||||  ||||||||||||||||||| |||||||||||    
T  31197876 ggattgtctccacttacaaacacattgtcaggccatcacctatctgatgtgggactcttaaca 31197814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 36917504 - 36917556
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||| |||||||||  |||| ||||||||||||||||||||||||||    
T  36917504 cacttataaatacattgtcaggccattacctatctgatgtgagactcttaaca 36917556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 10450019 - 10449964
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    ||||||||||||||||||||  ||||  |||||| |||||||||||||||||||||    
T  10450019 cacttataaacacattgtcaggccatgtcctatccgatgtgagactcttaacaata 10449964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 24532486 - 24532539
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||||||||||||||||||  ||||| |||||| |||||| ||||||||||||    
T  24532486 cacttataaacacattgtcaggccatctcctatccgatgtgggactcttaacaa 24532539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 316
Target Start/End: Original strand, 37684849 - 37684969
Alignment:
Q  196 aggtgtcatcacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgacca 295  Q
    ||||| || |||| |||| ||||||||||||| ||||| |||||||| |||||| || ||| ||||| |||||| | | | || |||||||| || || |    
T  37684849 aggtgccagcacataatgggttcatgatcccattcataaaaggaacaagtgtgaccaaaatattttcctaaaaatcacttccaagaggtgaatttaacaa 37684948  T
Q  296 tatccatcaactgaagcacat 316  Q
    ||| |||||| |||| |||||    
T  37684949 tattcatcaaatgaaacacat 37684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 12317065 - 12317010
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    |||||||||||||||||||| |||||  ||| || |||||| ||||||||||||||    
T  12317065 cacttataaacacattgtcagaccatgtcctgtccgatgtgggactcttaacaata 12317010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 318
Target Start/End: Complemental strand, 34391392 - 34391292
Alignment:
Q  216 ttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactgaagcaca 315  Q
    ||||||||| |||||||||||||||||   |||| |||||| ||||| || ||||| | |||| |||||||| || || ||||||||||| || |||| |    
T  34391392 ttcatgatctcactcatagaaggaaca--ggtgaccataatattttcctagaaaccactttcaagaggtgaatttaacaatatccatcaattggagcata 34391295  T
Q  316 tac 318  Q
    |||    
T  34391294 tac 34391292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 3157625 - 3157678
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||| |||||| ||  |||||||||||| |||||| ||||||||||||    
T  3157625 cacttataaatacattgccaggccatcacctatccgatgtgggactcttaacaa 3157678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 5590433 - 5590486
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||| |||||||||||||| |||||| |||||| |||||| |||||| |||||    
T  5590433 cacttgtaaacacattgtcagaccatctcctatccgatgtgggactctgaacaa 5590486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 28213159 - 28213220
Alignment:
Q  132 ggattgtctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||| | |||||||||||||||||||| |||||| | ||||| ||| | |||||||||||    
T  28213159 ggattgccgcacttataaacacattgtcagaccatctcatatcttatgcgggactcttaaca 28213220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 422282 - 422334
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||| |||||||||||||| |||||| |||||| |||||| |||| ||||||    
T  422282 cacttttaaacacattgtcagaccatctcctatccgatgtgggacttttaaca 422334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 3157074 - 3157126
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||    |||||| ||||| ||||||||||||||||||    
T  3157074 cacttataaacacattgttgggccatcatctatccgatgtgagactcttaaca 3157126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 5675791 - 5675847
Alignment:
Q  134 attgtctc-acttataaacacattgtcaaaccatcacctatctgatgtgagactctt 189  Q
    |||||||| ||||||||||||||||||| ||||||| ||||| |||||  |||||||    
T  5675791 attgtctctacttataaacacattgtcagaccatcatctatccgatgtaggactctt 5675847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 5932014 - 5932066
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||   |||||||||||| |||||||||||    
T  5932014 cacttataaacacattgtcaggccatgtactatctgatgtgggactcttaaca 5932066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 11232494 - 11232546
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||  ||| || |||||| |||||||||||    
T  11232494 cacttataaacacattgtcagaccatgtcctgtccgatgtgggactcttaaca 11232546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 34992569 - 34992517
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  34992569 cacttataaacacattgtcagaccatcacctatccgatgtgggactcttaaca 34992517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 27086601 - 27086553
Alignment:
Q  146 ataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    |||||||||||||||  ||||||||||||||||||| ||||||||||||    
T  27086601 ataaacacattgtcaggccatcacctatctgatgtgggactcttaacaa 27086553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 35038259 - 35038311
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  35038259 cacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 35038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 35038493 - 35038545
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  |||||||||||| |||||| |||||||||||    
T  35038493 cacttataaacacattgtcaggccatcacctatccgatgtgggactcttaaca 35038545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 39620345 - 39620293
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  39620345 cacttataaacacattgtcaggtcatcacctatccgatgtgagactcttaaca 39620293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 261
Target Start/End: Original strand, 52733483 - 52733539
Alignment:
Q  205 cacagaatgagttcatgatcccactcatagaaggaacacgtgtgatcataatgtttt 261  Q
    |||| |||||||||||||| || ||||||||||||||| |||||| |||||||||||    
T  52733483 cacaaaatgagttcatgattccgctcatagaaggaacaagtgtgaccataatgtttt 52733539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 27209807 - 27209721
Alignment:
Q  215 gttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatcca 301  Q
    ||||||||||| |||||||| || |||| ||| || |||||||||||| ||||||||   |||| ||| ||||||| ||||||||||    
T  27209807 gttcatgatcctactcataggagaaacaagtgcgaccataatgttttcctaaaaaccaatttcaagagatgaacttaaccatatcca 27209721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 38791513 - 38791567
Alignment:
Q  139 ctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||| ||||||||| |||||| |||||| |||||| |||||||||||    
T  38791513 ctcacttataaatacattgtcagaccatctcctatccgatgtgggactcttaaca 38791567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 14839803 - 14839856
Alignment:
Q  142 acttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaat 195  Q
    ||||||||| ||||| ||| ||||||| ||||||||||||| ||||||||||||    
T  14839803 acttataaatacattatcagaccatcaactatctgatgtgaaactcttaacaat 14839856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 310
Target Start/End: Original strand, 22276191 - 22276287
Alignment:
Q  213 gagttcatgatcccactcatagaaggaacacgtgtgatcataatgttttcttaaaaaccgcattcatgaggtgaacttgaccatatccatcaactgaa 310  Q
    |||||||||||| |||||||||||| | ||  ||||| |||||||||||| |||||| | | |||| |||||||| || ||||| |||| ||||||||    
T  22276191 gagttcatgatctcactcatagaagca-catatgtgaccataatgttttcctaaaaaacactttcaagaggtgaatttaaccatgtccaccaactgaa 22276287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 16239610 - 16239558
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||||||||  ||||  |||||| ||||||||||||||||||    
T  16239610 cacttataaacacattgtcaggccatgtcctatccgatgtgagactcttaaca 16239558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 34992860 - 34992808
Alignment:
Q  142 acttataaacacatt-gtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||||||||| |||| ||||||||||||| |||||| |||||||||||    
T  34992860 acttataaacacatttgtcagaccatcacctatccgatgtgggactcttaaca 34992808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 13741167 - 13741222
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagact-cttaacaat 195  Q
    ||||||||||||||||||||||||||| ||||| ||| ||| |||| |||||||||    
T  13741167 cacttataaacacattgtcaaaccatctcctatttgaagtgggactccttaacaat 13741222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 2123828 - 2123771
Alignment:
Q  139 ctcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    |||||||||||||||||| ||| | |||  |||||| || ||||||||||||||||||    
T  2123828 ctcacttataaacacattatcagatcatgtcctatccgacgtgagactcttaacaata 2123771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 4008701 - 4008652
Alignment:
Q  144 ttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    ||||||||| |||||||  |||||||||||| |||| |||||||||||||    
T  4008701 ttataaacatattgtcaggccatcacctatccgatgcgagactcttaaca 4008652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 22729119 - 22729066
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||| |||||||||||||| |||||| |||||| |||||| |||||| |||||    
T  22729119 cacttgtaaacacattgtcagaccatctcctatccgatgtgggactctgaacaa 22729066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 16927014 - 16927070
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaatag 197  Q
    ||||||||||||||||||||  ||||   ||||| |||||| |||||||||||||||    
T  16927014 cacttataaacacattgtcaggccatgttctatccgatgtgggactcttaacaatag 16927070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 14557 - 14506
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaac 192  Q
    |||||||||||||||||||| ||||||||||||| |||||| ||||||||||    
T  14557 cacttataaacacattgtcagaccatcacctatccgatgtgggactcttaac 14506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 14322 - 14282
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtg 181  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  14322 cacttataaacacattgtcagaccatcacctatccgatgtg 14282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 5674 - 5619
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaata 196  Q
    ||||||||||||||||||||  |||||  |||||||||||| ||||||||||||||    
T  5674 cacttataaacacattgtcatgccatcttctatctgatgtgggactcttaacaata 5619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 429892 - 429841
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaac 192  Q
    ||||||||||||||||||||  |||||||||||| |||||| ||||||||||    
T  429892 cacttataaacacattgtcaggccatcacctatccgatgtgggactcttaac 429841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 6293 - 6241
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| || ||| | ||||||||||| |||||||||||    
T  6293 cacttataaacacattgtcagactatctcttatctgatgtgggactcttaaca 6241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 194
Target Start/End: Complemental strand, 20959 - 20905
Alignment:
Q  140 tcacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaacaa 194  Q
    ||||||||||| ||||||||| |||||| |||  ||||||| |||||||||||||    
T  20959 tcacttataaatacattgtcagaccatctccttactgatgtcagactcttaacaa 20905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 1935 - 1883
Alignment:
Q  141 cacttataaacacattgtcaaaccatcacctatctgatgtgagactcttaaca 193  Q
    |||||||||||||||||||| |||||  ||| || |||||| |||||||||||    
T  1935 cacttataaacacattgtcagaccatgtcctgtccgatgtgggactcttaaca 1883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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