View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_28 (Length: 459)
Name: NF18315_low_28
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_28 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 31320212 - 31319787
Alignment:
| Q |
19 |
tccatagcagatagatactctaagctttcaaagaggggaagtttgtgttcatctgaccattcttttaacacattctgtggtgttcttatgcatgctgacc |
118 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320212 |
tccatagcagatagatactctaaggtttcaaagaggggaagtttgtgttcatctgaccattcttttaacacattctgtggtgttcttatgcatgctgacc |
31320113 |
T |
|
| Q |
119 |
aattcacagctgaaccaccacctactgttgaacctgcaaaaataactattcttgaatcaacagaagctaacatacctccattttcatattgttggtccat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31320112 |
aattcacagctgaaccaccacctactgttgaacctgcaaaaagaactattcttgaatcaacagaagctaacatacctcctttttcatattgttggtccat |
31320013 |
T |
|
| Q |
219 |
tgaaggaccttctagagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31320012 |
tgaaggaccttctagagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgct |
31319913 |
T |
|
| Q |
319 |
acacctcctccacagccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31319912 |
acacctcctccacagccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
31319813 |
T |
|
| Q |
419 |
gagattgatgaagagttgtgtcatgt |
444 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
31319812 |
gagattgttgaagagttgtgtcatgt |
31319787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 31332465 - 31332040
Alignment:
| Q |
19 |
tccatagcagatagatactctaagctttcaaagaggggaagtttgtgttcatctgaccattcttttaacacattctgtggtgttcttatgcatgctgacc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| | ||||||||||| |||||||||||||| ||||| || | ||||||| | ||||| ||||||| |
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| T |
31332465 |
tccatagcagatagatactctatgctatcaaagagtgaaagtttgtgtttctctgaccattctttcaacaccttttctggtgttttaatgcaagctgacc |
31332366 |
T |
|
| Q |
119 |
aattcacagctgaaccaccacctactgttgaacctgcaaaaataactattcttgaatcaacagaagctaacatacctccattttcatattgttggtccat |
218 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
31332365 |
aattaacagctgaaccaccacctactgttgaacctgccaaaataagtattcttgaatcaatagaagctaggatccctccattttcatattgttggtccat |
31332266 |
T |
|
| Q |
219 |
tgaaggaccttctagagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgct |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31332265 |
tgaaggaccttctagagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgct |
31332166 |
T |
|
| Q |
319 |
acacctcctccacagccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332165 |
acacctcctccacagccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
31332066 |
T |
|
| Q |
419 |
gagattgatgaagagttgtgtcatgt |
444 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
31332065 |
gagattgttgaagagttgtgtcatgt |
31332040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 3458 - 3883
Alignment:
| Q |
19 |
tccatagcagatagatactctaagctttcaaagaggggaagtttgtgttcatctgaccattcttttaacacattctgtggtgttcttatgcatgctgacc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||| | ||||||||||| |||||||||||||| ||||| || | ||||||| | ||||| ||||||| |
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| T |
3458 |
tccatagcagatagatactctatgctatcaaagagtgaaagtttgtgtttctctgaccattctttcaacaccttttctggtgttttaatgcaagctgacc |
3557 |
T |
|
| Q |
119 |
aattcacagctgaaccaccacctactgttgaacctgcaaaaataactattcttgaatcaacagaagctaacatacctccattttcatattgttggtccat |
218 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||| || |||||||||||||||||||||||||| |
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| T |
3558 |
aattaacagctgaaccaccacctactgttgaacctgccaaaataagtattcttgaatcaatagaagctaggatccctccattttcatattgttggtccat |
3657 |
T |
|
| Q |
219 |
tgaaggaccttctagagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgct |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3658 |
tgaaggaccttctagagatgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgct |
3757 |
T |
|
| Q |
319 |
acacctcctccacagccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3758 |
acacctcctccacagccagaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgttagata |
3857 |
T |
|
| Q |
419 |
gagattgatgaagagttgtgtcatgt |
444 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
3858 |
gagattgttgaagagttgtgtcatgt |
3883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 33522292 - 33522350
Alignment:
| Q |
110 |
atgctgaccaattcacagctgaaccaccacctactgttgaacctgcaaaaataactatt |
168 |
Q |
| |
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||||||||||||| ||||| ||||||||||| | |||||||||||| | || ||||||| |
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| T |
33522292 |
atgctgaccaattaacagcagaaccaccaccaattgttgaacctgctagaagaactatt |
33522350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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