View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_29 (Length: 453)
Name: NF18315_low_29
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 47 - 436
Target Start/End: Original strand, 41654571 - 41654962
Alignment:
| Q |
47 |
ctggaattagccaaagagcctcgagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaagttggttatgaagaatttgaaacca |
146 |
Q |
| |
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|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
41654571 |
ctggaattagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaagaatttgagacca |
41654670 |
T |
|
| Q |
147 |
gtaagcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctcc |
246 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41654671 |
gtaagcttataagaacaaaattggatgaattgggtgttacatataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctcc |
41654770 |
T |
|
| Q |
247 |
ttttgtcgctcttagagctgacatggatgctcttcttatgcaggtacgtaggtccacatttttactttctgaatgttttggttttcaattattattactt |
346 |
Q |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41654771 |
ttttgtcgctctcagagctgaaatggatgctcttcttatgcaggtacgtaggtccacatttttactttctgaatgttttggttttcaattattattactt |
41654870 |
T |
|
| Q |
347 |
tccacatgcatgcaggtctaca--nnnnnnnnccgtgtgtttaggttttaaacatatattgtcatatattttatattaggatatactgtttc |
436 |
Q |
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|||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41654871 |
tccacatgcatgcaggtctacattttttttttccgagtgttttggttttaaacatatattgtcatatattttatattaggatatactgtttc |
41654962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 360
Target Start/End: Complemental strand, 43213620 - 43213279
Alignment:
| Q |
19 |
aaaagaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttgatataaggaggaagattcatgagaatcct |
118 |
Q |
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|||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43213620 |
aaaagaccacttagcaattccaaagcttctggaattagccaaagagcctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcct |
43213521 |
T |
|
| Q |
119 |
gaagttggttatgaagaatttgaaaccagtaagcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgtta |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| | ||||||||||||||||| ||| |||||||||| |
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| T |
43213520 |
gaagttggttatgaagaatttgaaaccagtaagcttataagaacaaaattagatgaattaggtgtcccatataaacatccagttgtagtgacaggtgtta |
43213421 |
T |
|
| Q |
219 |
ttggttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttcttatgcaggtacgtaggtccacatttttactttctga |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43213420 |
ttggttacataggaactggtcttcctccttttgtcgctcttagagctgagatggatgctcttcttatgcaggtacgtaagtccacatttttactttctga |
43213321 |
T |
|
| Q |
319 |
atgttttggttttcaattattattactttccacatgcatgca |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43213320 |
atgttttggttttcaattattattactttccacatgcatgca |
43213279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 47 - 291
Target Start/End: Complemental strand, 43224327 - 43224083
Alignment:
| Q |
47 |
ctggaattagccaaagagcctcgagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaagttggttatgaagaatttgaaacca |
146 |
Q |
| |
|
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| |
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| T |
43224327 |
ctggaattagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagacca |
43224228 |
T |
|
| Q |
147 |
gtaagcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctcc |
246 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43224227 |
gtaagcttataagaacagaattggatgaattaggtgttcaatataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctcc |
43224128 |
T |
|
| Q |
247 |
ttttgtcgctcttagagctgacatggatgctcttcttatgcaggt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
43224127 |
ttttgtcgctcttagagctgacatggatgctcttctcatgcaggt |
43224083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 43228152 - 43227884
Alignment:
| Q |
23 |
gaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaag |
122 |
Q |
| |
|
||||||||| |||| ||||| ||||| || ||||| ||||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||||||| |
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| T |
43228152 |
gaccacttatcaatcccaaactttctagatttagctaaagagcctaaagtttttgactggatggtttctataaggagaaaaattcatgagaatcctgaac |
43228053 |
T |
|
| Q |
123 |
ttggttatgaagaatttgaaaccagtaagcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattgg |
222 |
Q |
| |
|
| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43228052 |
tgagttatcaagaatttgagactagtaagcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattgg |
43227953 |
T |
|
| Q |
223 |
ttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttcttatgcaggt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
43227952 |
ttacataggaactggtcttcctccttttgttgctcttagagctgacatggatgctcttctcatgcaggt |
43227884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 43206642 - 43206374
Alignment:
| Q |
23 |
gaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaag |
122 |
Q |
| |
|
||||||||| |||| ||||| ||||| || ||||| ||||||||| ||||||||| ||||||||| ||||||||| || |||||||||||||||||| |
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|
| T |
43206642 |
gaccacttatcaatcccaaactttctagatttagctaaagagcctaaagtttttgactggatggtttctataaggagaaaaattcatgagaatcctgaac |
43206543 |
T |
|
| Q |
123 |
ttggttatgaagaatttgaaaccagtaagcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattgg |
222 |
Q |
| |
|
| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43206542 |
tgagttatcaagaatttgagactagtaagcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattgg |
43206443 |
T |
|
| Q |
223 |
ttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttcttatgcaggt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
43206442 |
ttacataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcaggt |
43206374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 23 - 292
Target Start/End: Original strand, 41650007 - 41650276
Alignment:
| Q |
23 |
gaccacttagcaataccaaagtttctggaattagccaaagagcctcgagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaag |
122 |
Q |
| |
|
||||||||| |||| ||||| ||||| | ||| |||| || |||| ||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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|
| T |
41650007 |
gaccacttatcaatcccaaactttctaaatttatccaaggaacctcaagtttttgatttcatggttgatataaggagaaaaattcatgagaatcctgaac |
41650106 |
T |
|
| Q |
123 |
ttggttatgaagaatttgaaaccagtaagcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattgg |
222 |
Q |
| |
|
| ||||| |||||||| |||| |||||||||||| |||||||||||||||| || ||||| | ||||||||||||||||||||| |||||||||||||| |
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|
| T |
41650107 |
tgagttatcaagaatttaaaactagtaagcttatacgaacaaaattggatgaattaggtgtcccatataaacatccagttgcagtgacaggtgttattgg |
41650206 |
T |
|
| Q |
223 |
ttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttcttatgcaggta |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
41650207 |
ttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgcaggta |
41650276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 291
Target Start/End: Complemental strand, 5073836 - 5073616
Alignment:
| Q |
71 |
gtttttgattggatggttgatataaggaggaagattcatgagaatcctgaagttggttatgaagaatttgaaaccagtaagcttataagaacaaaattgg |
170 |
Q |
| |
|
|||| |||||||||| | |||| || ||||| |||||||||||||| ||| | |||||||| |||||||| || ||| | | ||||||||| |||||| |
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|
| T |
5073836 |
gtttatgattggatgatcaatatcagaaggaaaattcatgagaatccagaattgggttatgaggaatttgagacaagtgaattgataagaacagaattgg |
5073737 |
T |
|
| Q |
171 |
atgagttgggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacat |
270 |
Q |
| |
|
|| | || || ||| |||||| ||||||||||| | || ||||| ||||||| |||||||||||| | |||||||||| ||| | |||||||| || |
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|
| T |
5073736 |
ataaactgagtattccctataaatatccagttgcaatcactggtgtcattggtttcataggaactggattgtctccttttgttgctttaagagctgatat |
5073637 |
T |
|
| Q |
271 |
ggatgctcttcttatgcaggt |
291 |
Q |
| |
|
|||||||||| ||||||||| |
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| T |
5073636 |
ggatgctctttctatgcaggt |
5073616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 31839492 - 31839458
Alignment:
| Q |
243 |
ctccttttgtcgctcttagagctgacatggatgct |
277 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
31839492 |
ctccttttgttgctcttagagctgacatggatgct |
31839458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 277
Target Start/End: Original strand, 26262851 - 26262888
Alignment:
| Q |
240 |
ttcctccttttgtcgctcttagagctgacatggatgct |
277 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
26262851 |
ttcctccatttgttgctcttagagctgacatggatgct |
26262888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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