View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_low_32 (Length: 436)
Name: NF18315_low_32
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_32 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0038 (5 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 305; Significance: 1e-171; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 71 - 419
Target Start/End: Complemental strand, 28329059 - 28328710
Alignment:
| Q |
71 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
170 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28329059 |
ataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
28328960 |
T |
|
| Q |
171 |
acctctgcatgaatccattcatttactnnnnnnnttccgcccatgttgtagtttggcttaaattccagcttcatatcatacaaatatgtatgatgagtcc |
270 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328959 |
acctctgcatgaatccattcatttactaaaaaaattccgcccatgttgtagtttggcttaaattccagcttcatatcatacaaatatgtatgatgagtcc |
28328860 |
T |
|
| Q |
271 |
acattttaccaaacttagtcaggaga-tataaagatcatatttgttgccatggatgatcagagtgggacttgtcttatgtaaatcaaaatcattactggt |
369 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328859 |
acattttaccaaacttagtcaggagaatataaagatcatatttgttgccatggatgatcagagtgggacttgtcttatgtaaatcaaaatcattactggt |
28328760 |
T |
|
| Q |
370 |
tgtatcaactgatttagtagaaatacagagagccatggaaggatgcttgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28328759 |
tgtatcaactgatttagtagaaatacagagagccatggaaggatgcttgt |
28328710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 71 - 419
Target Start/End: Complemental strand, 28506695 - 28506346
Alignment:
| Q |
71 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
170 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506695 |
ataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
28506596 |
T |
|
| Q |
171 |
acctctgcatgaatccattcatttactnnnnnnnttccgcccatgttgtagtttggcttaaattccagcttcatatcatacaaatatgtatgatgagtcc |
270 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506595 |
acctctgcatgaatccattcatttactaaaaaaattccgcccatgttgtagtttggcttaaattccagcttcatatcatacaaatatgtatgatgagtcc |
28506496 |
T |
|
| Q |
271 |
acattttaccaaacttagtcaggaga-tataaagatcatatttgttgccatggatgatcagagtgggacttgtcttatgtaaatcaaaatcattactggt |
369 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506495 |
acattttaccaaacttagtcaggagaatataaagatcatatttgttgccatggatgatcagagtgggacttgtcttatgtaaatcaaaatcattactggt |
28506396 |
T |
|
| Q |
370 |
tgtatcaactgatttagtagaaatacagagagccatggaaggatgcttgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506395 |
tgtatcaactgatttagtagaaatacagagagccatggaaggatgcttgt |
28506346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 28191859 - 28191736
Alignment:
| Q |
71 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
170 |
Q |
| |
|
||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | | ||||||| || || |
|
|
| T |
28191859 |
ataaggatcggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccactctcggatgttcatatgta |
28191760 |
T |
|
| Q |
171 |
acctctgcatgaatccattcattt |
194 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
28191759 |
acctctgcatgattccattcattt |
28191736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 28525678 - 28525555
Alignment:
| Q |
71 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
170 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| || | ||||||| ||| || |
|
|
| T |
28525678 |
ataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccactaactgatgttcacatata |
28525579 |
T |
|
| Q |
171 |
acctctgcatgaatccattcattt |
194 |
Q |
| |
|
| |||||||||| |||| |||||| |
|
|
| T |
28525578 |
atctctgcatgattccagtcattt |
28525555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 28246823 - 28246700
Alignment:
| Q |
71 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
170 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||| || |||| ||||||||||||||| |||||||| |||||| ||| || ||||||| ||| || |
|
|
| T |
28246823 |
ataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctgatgttcacatata |
28246724 |
T |
|
| Q |
171 |
acctctgcatgaatccattcattt |
194 |
Q |
| |
|
| |||||||||| |||| |||||| |
|
|
| T |
28246723 |
atctctgcatgattccactcattt |
28246700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 28239832 - 28239710
Alignment:
| Q |
72 |
taaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaa |
171 |
Q |
| |
|
||||||| |||||| |||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||| || ||| |
|
|
| T |
28239832 |
taaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttgaatgttcaaatataa |
28239733 |
T |
|
| Q |
172 |
cctctgcatgaatccattcattt |
194 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
28239732 |
cctctgcatgattccattcattt |
28239710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 28223920 - 28223878
Alignment:
| Q |
349 |
taaatcaaaatcattactggttgtatcaactgatttagtagaa |
391 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
28223920 |
taaatcaaaatcattactgattgtagcaactgatttagtagaa |
28223878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 28239540 - 28239504
Alignment:
| Q |
375 |
caactgatttagtagaaatacagagagccatggaagg |
411 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28239540 |
caactgatttagtagaaaaacagagagccatggaagg |
28239504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 28246524 - 28246482
Alignment:
| Q |
369 |
ttgtatcaactgatttagtagaaatacagagagccatggaagg |
411 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
28246524 |
ttgtagcagctgatttagtagaaaaacagagagccatggaagg |
28246482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 54948 - 55071
Alignment:
| Q |
71 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
170 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||| ||| || |
|
|
| T |
54948 |
ataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacatgta |
55047 |
T |
|
| Q |
171 |
acctctgcatgaatccattcattt |
194 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
55048 |
acctctgcatggatccattcattt |
55071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 71 - 194
Target Start/End: Complemental strand, 46985 - 46862
Alignment:
| Q |
71 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatcta |
170 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||| || |||| ||||||||||||||| |||||||| |||||| ||| || ||||||| ||| || |
|
|
| T |
46985 |
ataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctgatgttcacatata |
46886 |
T |
|
| Q |
171 |
acctctgcatgaatccattcattt |
194 |
Q |
| |
|
| |||||||||| |||| |||||| |
|
|
| T |
46885 |
atctctgcatgattccactcattt |
46862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 194
Target Start/End: Complemental strand, 39994 - 39872
Alignment:
| Q |
72 |
taaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttcaaccccccgatgttcccatctaa |
171 |
Q |
| |
|
||||||| |||||| |||| || ||||||||||||| |||||||||||||||||||||| ||||||||||||||| || |||||| || ||| |
|
|
| T |
39994 |
taaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttgaatgttcaaatataa |
39895 |
T |
|
| Q |
172 |
cctctgcatgaatccattcattt |
194 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
39894 |
cctctgcatgattccattcattt |
39872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 24418 - 24376
Alignment:
| Q |
349 |
taaatcaaaatcattactggttgtatcaactgatttagtagaa |
391 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
24418 |
taaatcaaaatcattactgattgtagcaactgatttagtagaa |
24376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 39702 - 39666
Alignment:
| Q |
375 |
caactgatttagtagaaatacagagagccatggaagg |
411 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39702 |
caactgatttagtagaaaaacagagagccatggaagg |
39666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 411
Target Start/End: Complemental strand, 46686 - 46644
Alignment:
| Q |
369 |
ttgtatcaactgatttagtagaaatacagagagccatggaagg |
411 |
Q |
| |
|
||||| || ||||||||||||||| |||||||||||||||||| |
|
|
| T |
46686 |
ttgtagcagctgatttagtagaaaaacagagagccatggaagg |
46644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University