View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_36 (Length: 404)
Name: NF18315_low_36
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 2597573 - 2597343
Alignment:
| Q |
18 |
ccgagcattgtgtttatatatctgttttgttcctcaatgtgatactgaattgaggatttgtagtactttctgtccatggttttcctaaattgtatgcata |
117 |
Q |
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| T |
2597573 |
ccgagcattgtgtttatatatctgttttgttcctcaatgtgatactgaattgaggatttgtagtactttctgtccatggttttcctgaattgtatgcata |
2597474 |
T |
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| Q |
118 |
ttctttatggggtatctttgttgggaatcttattagtctaataatcatgtcgttcactgaaagtcagtgcaagctttttagatcaatgagattgt-gggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
2597473 |
ttctttatggggtatctttgttgggaatcttattagtctaataatcatgtcgttcactgaaagtcagtgcaagctttttacatcaatgagattgtggggt |
2597374 |
T |
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| Q |
217 |
ttgattcattcctggttcttatgtagaggta |
247 |
Q |
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||||||| |||||||||||||| ||| |||| |
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| T |
2597373 |
ttgattctttcctggttcttatataggggta |
2597343 |
T |
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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 34788803 - 34788866
Alignment:
| Q |
71 |
ggatttgtagtactttctgtccatggttttcctaaattgtatgcatattctttatggggtatct |
134 |
Q |
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| T |
34788803 |
ggatttgtagtactttctgtccatgcttttcctgaattttatgcatattttttacgggatatct |
34788866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 2292390 - 2292300
Alignment:
| Q |
71 |
ggatttgtagtactttctgtccatggttttcctaaattgtatgcatattcttta-tggggtatctttgttgggaatcttattagtctaata |
160 |
Q |
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|||||||||||||||||| |||||| ||||||| |||| | ||||||| |||| ||||||||||| ||| |||||| |||||||||| |
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| T |
2292390 |
ggatttgtagtactttctatccatgcttttcctgtattgcaagcatattttttacgggggtatctttcctggaaatcttgctagtctaata |
2292300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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