View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_37 (Length: 400)

Name: NF18315_low_37
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_37
NF18315_low_37
[»] chr7 (2 HSPs)
chr7 (16-385)||(25810630-25810999)
chr7 (139-235)||(4995151-4995247)
[»] chr5 (2 HSPs)
chr5 (122-189)||(16612084-16612151)
chr5 (104-214)||(34402560-34402668)
[»] chr4 (2 HSPs)
chr4 (145-225)||(8947603-8947683)
chr4 (162-204)||(47295494-47295536)
[»] chr3 (1 HSPs)
chr3 (115-204)||(47118763-47118852)
[»] chr1 (1 HSPs)
chr1 (159-215)||(23164163-23164219)
[»] chr6 (1 HSPs)
chr6 (103-186)||(10052889-10052972)
[»] chr2 (1 HSPs)
chr2 (179-214)||(21770732-21770767)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 25810999 - 25810630
Alignment:
Q  16 caataattgactagctttgttgaataacacatgcatgatattggctataccacctaccttgtggaatgttggtaactgaatgtcatcagaattggcttgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  25810999 caataattgactagctttgttgaataacacatgcatgatattggctataccgcctaccttgtggaatgttggtaaccgaatgtcatcagaattggcttgc 25810900  T
Q  116 acatcctccaaatctttggcttcttgaaactcattttgaatcatgggtttcacaatgtcagcaagttgtttggagacatgatacatgatttcatgtatcc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||    
T  25810899 acatcctccaaatctttggcttcttgaaactcattttgaatcatgggtttcacaatgtcagcaagttgtttggagacatgatacacggtgtcatgtatcc 25810800  T
Q  216 atatgtcaatttattgtctagagaaagatgttgtcggttatgcatcattgtccacttccactctgatggtcactaaattttgagcatttgacaaaccatg 315  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25810799 atatgtcaatttattgtctagtgaaagatgttgtcagttatgcatcattgtccacttccactctgatggtcactaaattttgagcatttgacaaaccatg 25810700  T
Q  316 ttctaatttagcgatcttgataaagaaacagtttcctcgtttggctgttctagcatcgcctatccttcat 385  Q
    ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25810699 ttctaatttagtgaccttgataaagaaacagtttcctcgtttggctgctctagcatcgcctatccttcat 25810630  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 4995151 - 4995247
Alignment:
Q  139 ttgaaactcattttgaatcatgggtttcacaatgtcagcaagttgtttggagacatgatacatgatttcatgtatccatatgtcaatttattgtcta 235  Q
    ||||||||||||||||| ||||||||||||| | ||||||||||||||| |||| | | ||||||| |||||| |||| |||||||| | |||||||    
T  4995151 ttgaaactcattttgaaccatgggtttcacattttcagcaagttgtttgaagacttaaaacatgatgtcatgtgtccacatgtcaatatgttgtcta 4995247  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 189
Target Start/End: Original strand, 16612084 - 16612151
Alignment:
Q  122 tccaaatctttggcttcttgaaactcattttgaatcatgggtttcacaatgtcagcaagttgtttgga 189  Q
    |||||||| ||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||    
T  16612084 tccaaatccttggcttgttgaaactcatttttaaccattggtttcacaatgtcagcaagttgtttgga 16612151  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 214
Target Start/End: Original strand, 34402560 - 34402668
Alignment:
Q  104 gaattggcttgcacatcctccaaatctttggcttcttgaaactcattttgaatcatgggtttcacaatgtcagcaagttgtttggagacatgatacatga 203  Q
    |||||||||  |||| ||||||||| |||||||| ||||||||  ||| ||| ||| ||||||| | ||||| |||||||||||||||| |||||||| |    
T  34402560 gaattggctcacacagcctccaaatatttggcttgttgaaacttgttt-gaaccataggtttcatagtgtcaacaagttgtttggagacttgatacat-a 34402657  T
Q  204 tttcatgtatc 214  Q
    | |||||||||    
T  34402658 tgtcatgtatc 34402668  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 8947603 - 8947683
Alignment:
Q  145 ctcattttgaatcatgggtttcacaatgtcagcaagttgtttggagacatgatacatgatttcatgtatccatatgtcaat 225  Q
    ||||||| ||| ||||||||||||||||||| |||||| |||||| || ||||||| ||| ||||||| ||  ||||||||    
T  8947603 ctcatttggaaccatgggtttcacaatgtcaacaagttctttggatacttgatacaggatgtcatgtaccccaatgtcaat 8947683  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 47295494 - 47295536
Alignment:
Q  162 gtttcacaatgtcagcaagttgtttggagacatgatacatgat 204  Q
    |||| ||||||||||||||||||||| |||| |||||||||||    
T  47295494 gttttacaatgtcagcaagttgtttgaagacttgatacatgat 47295536  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 47118852 - 47118763
Alignment:
Q  115 cacatcctccaaatctttggcttcttgaaactcattttgaatcatgggtttcacaatgtcagcaagttgtttggagacatgatacatgat 204  Q
    |||| |||||||||  ||| ||| |||||||| |||||||| ||||| |||   ||||||| |||||||||||||||| | |||||||||    
T  47118852 cacaacctccaaattcttgacttgttgaaacttattttgaaccatggatttttaaatgtcaacaagttgtttggagacttaatacatgat 47118763  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 23164219 - 23164163
Alignment:
Q  159 tgggtttcacaatgtcagcaagttgtttggagacatgatacatgatttcatgtatcc 215  Q
    |||||||||||||| || |||||||||||||||| ||||||| ||| ||||| ||||    
T  23164219 tgggtttcacaatgacatcaagttgtttggagacttgatacacgatgtcatgcatcc 23164163  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 10052972 - 10052889
Alignment:
Q  103 agaattggcttgcacatcctccaaatctttggcttcttgaaactcattttgaatcatgggtttcacaatgtcagcaagttgttt 186  Q
    |||||||| ||||| | |||| |||| |||| ||| |||||||||||||||||  ||||| ||||| | |||| ||||||||||    
T  10052972 agaattggattgcataacctctaaatttttgacttattgaaactcattttgaacaatgggcttcacgaagtcaacaagttgttt 10052889  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 21770767 - 21770732
Alignment:
Q  179 agttgtttggagacatgatacatgatttcatgtatc 214  Q
    |||||||||||||||||||||||||| |||||||||    
T  21770767 agttgtttggagacatgatacatgatgtcatgtatc 21770732  T

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