View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_39 (Length: 389)

Name: NF18315_low_39
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_39
NF18315_low_39
[»] chr6 (3 HSPs)
chr6 (19-389)||(1940434-1940806)
chr6 (19-155)||(1926324-1926460)
chr6 (19-153)||(1955078-1955212)
[»] chr4 (2 HSPs)
chr4 (222-310)||(34671556-34671644)
chr4 (227-312)||(53376407-53376492)
[»] chr1 (4 HSPs)
chr1 (232-310)||(41676561-41676639)
chr1 (217-310)||(42456912-42457005)
chr1 (283-316)||(32801036-32801069)
chr1 (217-253)||(12947612-12947648)
[»] chr8 (3 HSPs)
chr8 (226-303)||(6659599-6659675)
chr8 (226-303)||(6740001-6740077)
chr8 (273-312)||(26834701-26834740)
[»] chr3 (1 HSPs)
chr3 (217-310)||(48517479-48517572)
[»] chr7 (1 HSPs)
chr7 (284-312)||(425571-425599)
[»] chr2 (1 HSPs)
chr2 (275-311)||(23932707-23932743)


Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 1940434 - 1940806
Alignment:
Q  19 ggaagatgaagatctttatcgctatgctagactggtaacttcagctgtgatagcaaagattcacaccatagattggactgtggagcttcttaaaactgac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1940434 ggaagatgaagatctttatcgctatgctagactggtaacttcagctgtgatagcaaagattcacaccatagattggactgtggagcttcttaaaactgac 1940533  T
Q  119 actttgcttggaggcatgcgcgccaattggtaagaacacatgcggtgatcttcactgtcgttattacttcatatatacgtctcattacgggtcattgcaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  1940534 actttgcttggaggcatgcgcgccaattggtaagaacacatgcagtgattttcactgtcgttattacttc--atatacgtctcattacgggtcattgcaa 1940631  T
Q  219 aactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaacctatag- 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  1940632 aactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaacctttagt 1940731  T
Q  318 ---nnnnnnnnnnnatgttgattgcattcatttatgtcatgatactaaaagttcaattgttttaggtatggatta 389  Q
                  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1940732 ttttttttttttttatgttgattgcattaatttatgtcatgatactaaaagttcaattgttttaggtatggatta 1940806  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 1926324 - 1926460
Alignment:
Q  19 ggaagatgaagatctttatcgctatgctagactggtaacttcagctgtgatagcaaagattcacaccatagattggactgtggagcttcttaaaactgac 118  Q
    |||||||||||||||||||||  |||||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1926324 ggaagatgaagatctttatcgtcatgctagattggtgacttcagctgttattgcaaagattcacaccatagattggactgtggagctccttaaaactgac 1926423  T
Q  119 actttgcttggaggcatgcgcgccaattggtaagaac 155  Q
    ||||||||||  |||||||| || |||||||| ||||    
T  1926424 actttgcttgctggcatgcgtgctaattggtatgaac 1926460  T

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Target: chr6; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 1955078 - 1955212
Alignment:
Q  19 ggaagatgaagatctttatcgctatgctagactggtaacttcagctgtgatagcaaagattcacaccatagattggactgtggagcttcttaaaactgac 118  Q
    |||||||||||||||||| ||  |||||||| |||| |||||||| || || ||||||||||||||||||||||||||||||||||| |||||||| |||    
T  1955078 ggaagatgaagatctttaccgtcatgctagattggtgacttcagcagttattgcaaagattcacaccatagattggactgtggagctccttaaaaccgac 1955177  T
Q  119 actttgcttggaggcatgcgcgccaattggtaaga 153  Q
    ||||||||||  |||||||| || |||||||||||    
T  1955178 actttgcttgctggcatgcgtgctaattggtaaga 1955212  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 34671644 - 34671556
Alignment:
Q  222 tatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa 310  Q
    ||||||||||||||||| || | |||||| || || ||||| | | |||||  |||||| |||||||||||||||||||||||||||||    
T  34671644 tatgtatttaatataaagtgtataagtttcaacataaacttatcacttttgccttcttattttatgcaagtttgcacatgatagaaaaa 34671556  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 53376492 - 53376407
Alignment:
Q  227 atttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaacc 312  Q
    ||||||||||||||||||| |||||||||  ||||| ||| |||  | |||||||  | ||||| ||| ||||||||| |||||||    
T  53376492 atttaatataaaatgcacaggttttaatacaaacttcttattttaaacttcttaacatgtgcaaattttcacatgataaaaaaacc 53376407  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 41676639 - 41676561
Alignment:
Q  232 atataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa 310  Q
    ||||||||||||||||||||||||  || || ||| |||  |||||||||  | ||||| |||||||||||||||||||    
T  41676639 atataaaatgcacaagttttaatacaaaattattattttgaatttcttaacatgtgcaaatttgcacatgatagaaaaa 41676561  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 42457005 - 42456912
Alignment:
Q  217 aaaactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa 310  Q
    |||| ||| ||||||||||||||||||||| || |||||| |||||  || |||| | ||||||   |||| |||||||| |||||||||||||    
T  42457005 aaaattatttatttaatataaaatgcacaaattctaatataaacttactatttttaacttcttatactatgtaagtttgcgcatgatagaaaaa 42456912  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 316
Target Start/End: Complemental strand, 32801069 - 32801036
Alignment:
Q  283 ttatgcaagtttgcacatgatagaaaaacctata 316  Q
    |||||||||||||||||||||||||||| |||||    
T  32801069 ttatgcaagtttgcacatgatagaaaaatctata 32801036  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 217 - 253
Target Start/End: Complemental strand, 12947648 - 12947612
Alignment:
Q  217 aaaactatgtatttaatataaaatgcacaagttttaa 253  Q
    |||||||  ||||||||||||||||||||||||||||    
T  12947648 aaaactacctatttaatataaaatgcacaagttttaa 12947612  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 6659675 - 6659599
Alignment:
Q  226 tatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgat 303  Q
    ||||||||||||||| |||||||||||| || || || ||| |||||| ||||||   ||||||||||||||||||||    
T  6659675 tatttaatataaaatacacaagttttaagataaatttatta-ttttgacttcttataatatgcaagtttgcacatgat 6659599  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 303
Target Start/End: Complemental strand, 6740077 - 6740001
Alignment:
Q  226 tatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgat 303  Q
    ||||||||||||||| |||||||||||| || || || ||| |||||| ||||||   ||||||||||||||||||||    
T  6740077 tatttaatataaaatacacaagttttaagataaatttatta-ttttgacttcttataatatgcaagtttgcacatgat 6740001  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 273 - 312
Target Start/End: Original strand, 26834701 - 26834740
Alignment:
Q  273 atttcttaatttatgcaagtttgcacatgatagaaaaacc 312  Q
    |||||||||| ||||||| |||||||||||||||||||||    
T  26834701 atttcttaatatatgcaaatttgcacatgatagaaaaacc 26834740  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 310
Target Start/End: Complemental strand, 48517572 - 48517479
Alignment:
Q  217 aaaactatgtatttaatataaaatgcacaagttttaatattaacttgttagttttgatttcttaatttatgcaagtttgcacatgatagaaaaa 310  Q
    |||| ||| |||||||||||||||| | |||||| || || || ||  || |||| | || ||||||||| ||||||||||||||||| |||||    
T  48517572 aaaattatatatttaatataaaatgtataagtttgaagataaatttactacttttaactttttaatttattcaagtttgcacatgatacaaaaa 48517479  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 312
Target Start/End: Original strand, 425571 - 425599
Alignment:
Q  284 tatgcaagtttgcacatgatagaaaaacc 312  Q
    |||||||||||||||||||||||||||||    
T  425571 tatgcaagtttgcacatgatagaaaaacc 425599  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 23932707 - 23932743
Alignment:
Q  275 ttcttaatttatgcaagtttgcacatgatagaaaaac 311  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  23932707 ttcttaatatatgcaaatttgcacatgatagaaaaac 23932743  T

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