View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_4 (Length: 742)
Name: NF18315_low_4
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 439 - 725
Target Start/End: Complemental strand, 155964 - 155678
Alignment:
| Q |
439 |
atgatgtgaatatatattcctattactttctcggtaaagatctagattggtctcttgtataatttactgtttccacgaagctataggatttgatgaaagt |
538 |
Q |
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| T |
155964 |
atgatgtgaatatatattcctattactttctcggtaaagatctagattggtctcttgtataatttactgtttccacgaagctataggatttgatgaaagt |
155865 |
T |
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| Q |
539 |
tcaaaatatatagtcttgattcatgtggctacttgcggggattcaagtttgggaacaggcccaagatatagtcgtgcatgaaatcatgccttgtcagtat |
638 |
Q |
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| T |
155864 |
tcaaaatatatagtcttgattcatgtggctacttgtggggattcaagtttgggaataggcccaagatatagtcgtgcatgaaatcatgccttgtcagtat |
155765 |
T |
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| Q |
639 |
cccaacaattggaggcctctgcacaatgtttaacatttacaaatattagttataataataaaggtaattcatcattcaactctaatt |
725 |
Q |
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| T |
155764 |
cccaacaattggaggcctctgcacattgtttaacatttacaaatattagttataataataaaggtaattcatcattcaactctaatt |
155678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 156572 - 156353
Alignment:
| Q |
13 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
112 |
Q |
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| T |
156572 |
cacagatggatcctgtagagatggtggtcatattggttgtggtggcatcattagaggaagcaatggtgagtggttgtgaggtttctccaagtatattgaa |
156473 |
T |
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| Q |
113 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
212 |
Q |
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| T |
156472 |
gtatattggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggcacatgtatgccagaaggttgcaatttcgatttattgaggtgcat |
156373 |
T |
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| Q |
213 |
gttgactccttagttgttgt |
232 |
Q |
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| T |
156372 |
gttgactccttagttgttgt |
156353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 246 - 332
Target Start/End: Complemental strand, 156217 - 156131
Alignment:
| Q |
246 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtcttttattg |
332 |
Q |
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| T |
156217 |
catacgcttttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcatagcaatattagtcttctattg |
156131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 156089 - 156048
Alignment:
| Q |
332 |
gttgtaatctctttctttttgggcttaggccctcatcgatat |
373 |
Q |
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| T |
156089 |
gttgtaatctctttctttttgggcttaggccctcatcgatat |
156048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 31976695 - 31976581
Alignment:
| Q |
118 |
ttggaatagaaggtgcttatttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttga |
217 |
Q |
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||||||||| || || |||| |||||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | |||||||| |
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| T |
31976695 |
ttggaataggagatgtttatctggcagaattatgtggagtgttggaagggctcatgtatgtcagaaggttgtaatttcgatttattgagttacatgttga |
31976596 |
T |
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| Q |
218 |
ctccttagttgttgt |
232 |
Q |
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|| |||| ||||||| |
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| T |
31976595 |
cttcttacttgttgt |
31976581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 37054140 - 37054066
Alignment:
| Q |
159 |
ttggaagggctcatgta-tgccagaaggttgcaatttcgatttattgaggtgcatgttgactccttagttgttgt |
232 |
Q |
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| T |
37054140 |
ttggaaggggtcatgtaatgttagaaggttgcaattttgatttattgagttgcatgttgactccttagttattgt |
37054066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 31976445 - 31976373
Alignment:
| Q |
254 |
tttagctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtctt |
326 |
Q |
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| T |
31976445 |
tttagctaattataattgttcgatggagtcagggatatgtttttttgatgtatgtcgtagtaatattagtctt |
31976373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 369
Target Start/End: Complemental strand, 31976343 - 31976306
Alignment:
| Q |
332 |
gttgtaatctctttctttttgggcttaggccctcatcg |
369 |
Q |
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| T |
31976343 |
gttgtaatctctttctttttgggcttagactctcatcg |
31976306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 2909370 - 2909283
Alignment:
| Q |
137 |
tttggcagaattgtggggagtgttggaagggctcatgtatgccagaaggttgcaatttcgatttattgaggtgcatgttgactcctta |
224 |
Q |
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| T |
2909370 |
tttggtagaattatggggagtgttggaagatctcatgtatgctagaaggttgcaattttggtttattgagttgcatgttgactcctta |
2909283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 2909135 - 2909069
Alignment:
| Q |
258 |
gctaactatgattgttcgatggattcggggatctgattctttgatgtatgtcctagcaatattagtct |
325 |
Q |
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| T |
2909135 |
gctaactatggttgttcgatggatttgggggtctg-ttttttgatgtctatcctagcaatattagtct |
2909069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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