View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_41 (Length: 381)
Name: NF18315_low_41
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 787553 - 787689
Alignment:
| Q |
18 |
tttttcactgataccgattcagtttcacgttcttgattcctttcttgcttcaatttcgtttttctgatctcgtgattgaggaattccttccatcgattgt |
117 |
Q |
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| T |
787553 |
tttttcactgattccgattcagtgtcacgttcttgattcctttcttatttcaatttcgtttttctgatctcgtgattgaggaattccttgcatcgattgt |
787652 |
T |
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| Q |
118 |
tcattccttattttcttttgatttagtaatttctttttc |
156 |
Q |
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| T |
787653 |
tcattccttcttttc--ttgatttggcaatttctttttc |
787689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 275
Target Start/End: Complemental strand, 20226565 - 20226519
Alignment:
| Q |
229 |
ttttcccccaaatcctagggtttcacaatttcttgttcaatttcacc |
275 |
Q |
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| T |
20226565 |
ttttcccccaaatcctagggtttcgaaatttcttgttcaatttcacc |
20226519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 331 - 368
Target Start/End: Complemental strand, 7277331 - 7277294
Alignment:
| Q |
331 |
ttactcgatcgcaatttccagtttcgattcgaatccgt |
368 |
Q |
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| T |
7277331 |
ttactcgatcgcaatttccagtttcgattcgaatccgt |
7277294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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