View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_low_42 (Length: 372)
Name: NF18315_low_42
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_42 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 38252962 - 38252619
Alignment:
| Q |
10 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252962 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
38252863 |
T |
|
| Q |
110 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252862 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
38252763 |
T |
|
| Q |
210 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252762 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
38252663 |
T |
|
| Q |
310 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252662 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
38252619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 43156580 - 43156923
Alignment:
| Q |
10 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156580 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
43156679 |
T |
|
| Q |
110 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156680 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
43156779 |
T |
|
| Q |
210 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156780 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
43156879 |
T |
|
| Q |
310 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43156880 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
43156923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 11473904 - 11474247
Alignment:
| Q |
10 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11473904 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
11474003 |
T |
|
| Q |
110 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474004 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
11474103 |
T |
|
| Q |
210 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474104 |
aagttcacaggtatatgagttgttatttaaagtacttgttttaattttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
11474203 |
T |
|
| Q |
310 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474204 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
11474247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 28246132 - 28245804
Alignment:
| Q |
10 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28246132 |
aagaaaataattgaacttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
28246033 |
T |
|
| Q |
110 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
209 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28246032 |
tcagggtacaacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcg---------------cgctccacctaaagaaaa |
28245948 |
T |
|
| Q |
210 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245947 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
28245848 |
T |
|
| Q |
310 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28245847 |
acataatcattttaggttgatggagtatcttgttttgcgcctac |
28245804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 47 - 271
Target Start/End: Complemental strand, 50019678 - 50019454
Alignment:
| Q |
47 |
ataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgaca |
146 |
Q |
| |
|
|||||||||||||||||| |||| ||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50019678 |
ataacggtgataatggtggtcgttcagaaattgtgagttcagatgttctgcaagcaaaggggttcagggtacgacccggttcaaagcgaattaagcgaca |
50019579 |
T |
|
| Q |
147 |
caaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtactt |
246 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
50019578 |
caaaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctccacgtaaagaaaaaagttcacaggtatatgagttggtatttagagtactt |
50019479 |
T |
|
| Q |
247 |
gttttagttttacttgttttggtga |
271 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
50019478 |
gttttaattttacttgttttggtga |
50019454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 50019363 - 50019301
Alignment:
| Q |
286 |
catgtatcttagcttaataatttgacataatcattttaggttgatggagtatcttgttctgcg |
348 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50019363 |
catgtatcttagcttaataattttacataatcattttagtttgatggagtatcttgttctgcg |
50019301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 19307824 - 19307481
Alignment:
| Q |
10 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
109 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307824 |
aagaaaataattgaacttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
19307725 |
T |
|
| Q |
110 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307724 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
19307625 |
T |
|
| Q |
210 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307624 |
aagttcacaggtatatgagttgttatttaaagtacttgttttatttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
19307525 |
T |
|
| Q |
310 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19307524 |
acataatcattttaggttgatggagtatcttgttttgcgcctac |
19307481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 10124152 - 10124075
Alignment:
| Q |
10 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttg |
87 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10124152 |
aagaaaataattgaacttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttg |
10124075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 10124078 - 10124031
Alignment:
| Q |
306 |
tttgacataatcattttaggttgatggagtatcttgttctgcgcctac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10124078 |
tttgacataatcattttaggttgatggagtatcttgttatgcgcctac |
10124031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 25382017 - 25382360
Alignment:
| Q |
10 |
aagaaaataattgaacttcggacacaagctatggacaataacggtgataatggtgctcgtccagaagttgtgagtttggattttatgcaagcaaaggggt |
109 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || |||||||||||||||||| |
|
|
| T |
25382017 |
aagaaaataattgaatttcgggcacaagctatggacaataacggtgataatggtgctcgtccagaaattgtgagttcgaatgttatgcaagcaaaggggt |
25382116 |
T |
|
| Q |
110 |
tcagggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctccacctaaagaaaa |
209 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25382117 |
tcaaggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctccacctaaagaaaa |
25382216 |
T |
|
| Q |
210 |
aagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382217 |
aagttcacaggtatatgagttggtatttaaagtacttgttttaattttacttgttttggtgactgccataattttacatgtatcttagcttaataatttg |
25382316 |
T |
|
| Q |
310 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382317 |
acataatcattttaggttgatggagtatcttgttctgcgcctac |
25382360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 327
Target Start/End: Original strand, 48794087 - 48794140
Alignment:
| Q |
271 |
actgccataattttacatgtatcttagcttaataatttgacataatcattttaggtt |
327 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||||| |||||||||||||||||| |
|
|
| T |
48794087 |
actgccatgattttacatgtatcttagtt---taattttacataatcattttaggtt |
48794140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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