View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_43 (Length: 363)

Name: NF18315_low_43
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_43
NF18315_low_43
[»] chr6 (11 HSPs)
chr6 (11-344)||(14214122-14214455)
chr6 (78-345)||(14172698-14172965)
chr6 (78-345)||(14177234-14177501)
chr6 (78-271)||(14165867-14166060)
chr6 (14-55)||(31869717-31869758)
chr6 (118-261)||(13506157-13506300)
chr6 (13-55)||(10298868-10298910)
chr6 (13-54)||(29790216-29790257)
chr6 (118-174)||(13528887-13528943)
chr6 (13-53)||(28477764-28477804)
chr6 (13-53)||(29693894-29693934)
[»] chr7 (11 HSPs)
chr7 (13-55)||(35570265-35570307)
chr7 (13-58)||(36341626-36341671)
chr7 (13-55)||(6766761-6766803)
chr7 (13-55)||(4131714-4131756)
chr7 (13-55)||(8656083-8656125)
chr7 (13-55)||(25566758-25566800)
chr7 (13-55)||(27045619-27045661)
chr7 (13-55)||(42662196-42662238)
chr7 (13-54)||(24424623-24424664)
chr7 (12-57)||(49102023-49102068)
chr7 (15-55)||(5529020-5529060)
[»] chr8 (2 HSPs)
chr8 (13-57)||(9632162-9632206)
chr8 (11-53)||(40204931-40204973)
[»] chr4 (9 HSPs)
chr4 (13-55)||(30191679-30191721)
chr4 (13-57)||(19897646-19897690)
chr4 (12-55)||(35381104-35381147)
chr4 (13-55)||(2760938-2760980)
chr4 (13-55)||(5428587-5428629)
chr4 (12-54)||(12240388-12240430)
chr4 (12-54)||(20875457-20875499)
chr4 (12-58)||(23360184-23360230)
chr4 (13-54)||(3036990-3037031)
[»] chr3 (9 HSPs)
chr3 (12-54)||(41252973-41253015)
chr3 (13-54)||(15333017-15333058)
chr3 (15-49)||(3430487-3430521)
chr3 (13-55)||(22782275-22782317)
chr3 (13-55)||(22786639-22786681)
chr3 (20-54)||(27813819-27813853)
chr3 (13-55)||(32273719-32273761)
chr3 (13-55)||(42761694-42761736)
chr3 (13-57)||(44561791-44561835)
[»] chr1 (6 HSPs)
chr1 (13-55)||(15382637-15382679)
chr1 (13-55)||(44451499-44451541)
chr1 (13-49)||(30385356-30385392)
chr1 (13-53)||(38153488-38153528)
chr1 (13-55)||(40771983-40772025)
chr1 (14-54)||(3485419-3485459)
[»] chr2 (6 HSPs)
chr2 (12-53)||(9006994-9007035)
chr2 (13-53)||(43444751-43444791)
chr2 (13-55)||(7799856-7799898)
chr2 (12-54)||(11931701-11931743)
chr2 (12-53)||(42133763-42133804)
chr2 (12-53)||(33607387-33607428)
[»] chr5 (5 HSPs)
chr5 (13-55)||(24916459-24916501)
chr5 (12-55)||(10696799-10696842)
chr5 (13-55)||(24992349-24992391)
chr5 (12-49)||(7750096-7750133)
chr5 (15-55)||(12007845-12007885)
[»] scaffold0009 (1 HSPs)
scaffold0009 (14-55)||(217088-217129)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 14214122 - 14214455
Alignment:
Q  11 gatgaatagtgcacattgtaaaattgcgacatgtattttgaaacgaatctaatcatttattaaaccaacaattgtcaatggttgacttcgtaagcctcca 110  Q
    |||||||| |||||||| ||||||||||||||||||||| ||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14214122 gatgaataatgcacattataaaattgcgacatgtattttaaaacgaatgaaatcatttattagaccaacaattgtcaatggttgacttcgtaagcctcca 14214221  T
Q  111 ctacataagatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaagatggactgcagcacgaacattcttttcctctggg 210  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14214222 ctacataagatgaaatatagataaagatgcaattacacatagaaaatacatttcattgtttcgaagatggactgcagcacgaacattcttttcctctggg 14214321  T
Q  211 ttttcaaaagctttctgacacttattagctccaaaaccagcagctattgcactttctcttgcagtatgaggatcagttggcaacagactcaatgccttta 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||    
T  14214322 ttttcaaaagctttctgacacttattagctccaaaaccagcagctattgcactttctcttgcagttttaggatcagatggcaacagactcactgccttta 14214421  T
Q  311 ataattcattaatagttgtttcatagaattcatt 344  Q
    |||||||||||||| |||||||||||||||||||    
T  14214422 ataattcattaataattgtttcatagaattcatt 14214455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 78 - 345
Target Start/End: Original strand, 14172698 - 14172965
Alignment:
Q  78 acaattgtcaatggttgacttcgtaagcctccactacataagatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaaga 177  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14172698 acaattgtcaatggttgatttcataagcctacactacataagatgaattatagataaagatgcaattacacatagaaaatacatttcattgtttcgaaga 14172797  T
Q  178 tggactgcagcacgaacattcttttcctctgggttttcaaaagctttctgacacttattagctccaaaaccagcagctattgcactttctcttgcagtat 277  Q
    |||| ||||||||| |||| |||||||| ||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  14172798 tggattgcagcacgcacatacttttcctgtggtttttcaaaagctgtctcacaattattagctccaaaaccagcagctattgcactatctcttgcagtat 14172897  T
Q  278 gaggatcagttggcaacagactcaatgcctttaataattcattaatagttgtttcatagaattcatta 345  Q
    |||||||||||||||||| | |||||||||||  ||||||||||||||||||| ||||||||||||||    
T  14172898 gaggatcagttggcaacaaaatcaatgccttttgtaattcattaatagttgttacatagaattcatta 14172965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 78 - 345
Target Start/End: Original strand, 14177234 - 14177501
Alignment:
Q  78 acaattgtcaatggttgacttcgtaagcctccactacataagatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaaga 177  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14177234 acaattgtcaatggttgatttcataagcctacactacataagatgaattatagataaagatgcaattacacatagaaaatacatttcattgtttcgaaga 14177333  T
Q  178 tggactgcagcacgaacattcttttcctctgggttttcaaaagctttctgacacttattagctccaaaaccagcagctattgcactttctcttgcagtat 277  Q
    |||| ||||||||| |||| |||||||| ||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  14177334 tggattgcagcacgcacatacttttcctgtggtttttcaaaagctgtctcacaattattagctccaaaaccagcagctattgcactatctcttgcagtat 14177433  T
Q  278 gaggatcagttggcaacagactcaatgcctttaataattcattaatagttgtttcatagaattcatta 345  Q
    |||||||||||||||||| | |||||||||||  ||||||||||||||||||| ||||||||||||||    
T  14177434 gaggatcagttggcaacaaaatcaatgccttttgtaattcattaatagttgttacatagaattcatta 14177501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 78 - 271
Target Start/End: Original strand, 14165867 - 14166060
Alignment:
Q  78 acaattgtcaatggttgacttcgtaagcctccactacataagatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaaga 177  Q
    |||||||||||||||| | ||  || | ||| |||| |||||||||||||||||||| || ||||||||||  |||||||| ||||||||||||||||||    
T  14165867 acaattgtcaatggtttattttatatgtctcaactaaataagatgaattatagataatgaagcaattacaccaagaaaatagatctcattgtttcgaaga 14165966  T
Q  178 tggactgcagcacgaacattcttttcctctgggttttcaaaagctttctgacacttattagctccaaaaccagcagctattgcactttctcttg 271  Q
    |||| || |||| |||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14165967 tggattgtagcaagaaccttcttttcctctggtttttcaaaacctttctgacaattattagctccaaaaccagcagctattgcactttctcttg 14166060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 31869758 - 31869717
Alignment:
Q  14 gaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  31869758 gaatagtgtacattgtaaaatcgcgacatgtattttgaaacg 31869717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 13506300 - 13506157
Alignment:
Q  118 agatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaagatggactgcagcacgaacattcttttcctctgggttttcaa 217  Q
    |||||||||||||||||||| || ||||||  || |||| | |||||||||||||||   |||| |||  || | |||| |||||||  ||| |||| ||    
T  13506300 agatgaattatagataaagaagccattacatttacaaaaaagatctcattgtttcgatcttggattgcgtcaaggacatacttttccggtggattttgaa 13506201  T
Q  218 aagctttctgacacttattagctccaaaaccagcagctattgca 261  Q
     |||||| | ||| | || | ||||||||||||||| |||||||    
T  13506200 gagctttgttacaatgatcacctccaaaaccagcagttattgca 13506157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 10298868 - 10298910
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||| |||||||| ||||||||||| |||||||||||||||    
T  10298868 tgaataatgcacattataaaattgcgatatgtattttgaaacg 10298910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 29790257 - 29790216
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    ||||||||  |||||| |||||||||||||||||||||||||    
T  29790257 tgaatagtatacattgcaaaattgcgacatgtattttgaaac 29790216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 13528943 - 13528887
Alignment:
Q  118 agatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcga 174  Q
    |||||||||||||||||||| || ||||||  || |||| | |||||||||||||||    
T  13528943 agatgaattatagataaagaagctattacatttacaaaaaagatctcattgtttcga 13528887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 28477804 - 28477764
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaa 53  Q
    |||||||| ||||||| ||||||| ||||||||||||||||    
T  28477804 tgaatagtacacattgcaaaattgtgacatgtattttgaaa 28477764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 29693934 - 29693894
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaa 53  Q
    |||||||| ||||||| ||||||| ||||||||||||||||    
T  29693934 tgaatagtacacattgcaaaattgtgacatgtattttgaaa 29693894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 35570265 - 35570307
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35570265 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 35570307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 36341671 - 36341626
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacgaat 58  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||    
T  36341671 tgaatagtgcacattgcaaaaatgcgacatgtattttgaaacgaat 36341626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 6766761 - 6766803
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  6766761 tgaataatgcagattgtaaaattgcgacatgtattttgaaacg 6766803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 4131714 - 4131756
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||  |||||||||||||||||||| ||||||||||||    
T  4131714 tgaatagtatacattgtaaaattgcgacatatattttgaaacg 4131756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 8656125 - 8656083
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||||||||||||  ||||||||| |||||    
T  8656125 tgaatagtgcacattgtaaaattgcggtatgtattttaaaacg 8656083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 25566758 - 25566800
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||||||| |  ||||||||||||||||||    
T  25566758 tgaatagtgcacattgtaaaaattggacatgtattttgaaacg 25566800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 27045619 - 27045661
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||  ||||||||||||||| |||||||||||||||||    
T  27045619 tgaatagtatacattgtaaaattgcaacatgtattttgaaacg 27045661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 42662238 - 42662196
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||| | ||||||| ||||||||||||||||||||||||||    
T  42662238 tgaataatacacattgcaaaattgcgacatgtattttgaaacg 42662196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 24424623 - 24424664
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    ||||||||| |||| ||||||||| |||||||||||||||||    
T  24424623 tgaatagtgaacatagtaaaattgtgacatgtattttgaaac 24424664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 49102023 - 49102068
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaacgaa 57  Q
    |||||||||||| ||||||||||||  |||||||||||||| ||||    
T  49102023 atgaatagtgcatattgtaaaattgtaacatgtattttgaagcgaa 49102068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 5529060 - 5529020
Alignment:
Q  15 aatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||| |||||||||||||  ||||||||||||||||||    
T  5529060 aatagtgtacattgtaaaattaggacatgtattttgaaacg 5529020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 9632206 - 9632162
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacgaa 57  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  9632206 tgaatagtacacattgtaaaattgcgacatgtattttgaaacgaa 9632162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 40204931 - 40204973
Alignment:
Q  11 gatgaatagtgcacattgtaaaattgcgacatgtattttgaaa 53  Q
    ||||||||||||||||| ||||||| |||||||||||| ||||    
T  40204931 gatgaatagtgcacattttaaaattacgacatgtatttagaaa 40204973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 30191679 - 30191721
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  30191679 tgaatagtgcacattgtaaaattgcaacatgtattttgaaacg 30191721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 19897690 - 19897646
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacgaa 57  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||    
T  19897690 tgaatagtgtacattgtaaaattgcgacaagtattttgaaacgaa 19897646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 35381104 - 35381147
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||||||||||||||||||| |  ||||||||||||||||||    
T  35381104 atgaatagtgcacattgtaaaaattggacatgtattttgaaacg 35381147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 2760938 - 2760980
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||||||| |  ||||||||||||||||||    
T  2760938 tgaatagtgcacattgtaaaaattggacatgtattttgaaacg 2760980  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 5428629 - 5428587
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||  ||| |||||||||||||||||||||    
T  5428629 tgaatagtgcacattgccaaaatgcgacatgtattttgaaacg 5428587  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 12240388 - 12240430
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    |||||||||||||||||||||| |  |||||||||||||||||    
T  12240388 atgaatagtgcacattgtaaaaattggacatgtattttgaaac 12240430  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 20875457 - 20875499
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    |||||||||||||||| ||||||| | ||||||||||||||||    
T  20875457 atgaatagtgcacattttaaaattacaacatgtattttgaaac 20875499  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 23360230 - 23360184
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaacgaat 58  Q
    |||||||||||| |||| |||| ||||||||||||||||||| ||||    
T  23360230 atgaatagtgcatattgcaaaaatgcgacatgtattttgaaatgaat 23360184  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 3037031 - 3036990
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    |||||||| ||||||||| |||| ||||||||||||||||||    
T  3037031 tgaatagtacacattgtataattacgacatgtattttgaaac 3036990  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 41252973 - 41253015
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  41252973 atgaatagtgcacattgtaaaattgcgacatatattttgaaac 41253015  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 15333017 - 15333058
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  15333017 tgaatagtgcacattgtaaaattgcgacatgtattttaaaac 15333058  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 3430487 - 3430521
Alignment:
Q  15 aatagtgcacattgtaaaattgcgacatgtatttt 49  Q
    ||||||||||||||||||||||| |||||||||||    
T  3430487 aatagtgcacattgtaaaattgcaacatgtatttt 3430521  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 22782317 - 22782275
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||||||||||||  |||||||||||||||| |||||||||    
T  22782317 tgaatagtgcacattaaaaaattgcgacatgtagtttgaaacg 22782275  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 22786681 - 22786639
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||||||||||||  |||||||||||||||| |||||||||    
T  22786681 tgaatagtgcacattaaaaaattgcgacatgtagtttgaaacg 22786639  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 27813819 - 27813853
Alignment:
Q  20 tgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    |||||||||||||||||| ||||||||||||||||    
T  27813819 tgcacattgtaaaattgcaacatgtattttgaaac 27813853  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 32273761 - 32273719
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||| |||||||||| ||||| |||||||||||||||||||    
T  32273761 tgaataatgcacattgtgaaattacgacatgtattttgaaacg 32273719  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 42761694 - 42761736
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||||||| |  ||||||||||||||||||    
T  42761694 tgaatagtgcacattgtaaaaattggacatgtattttgaaacg 42761736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 44561835 - 44561791
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacgaa 57  Q
    |||||||||||||||| |||  ||| |||||||||||||||||||    
T  44561835 tgaatagtgcacattgcaaacatgcaacatgtattttgaaacgaa 44561791  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 15382637 - 15382679
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  15382637 tgaatagtgtacattgtaaaattgcgacatgtattttgaaacg 15382679  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 44451499 - 44451541
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  44451499 tgaatagtgcacatagtaaaattgcaacatgtattttgaaacg 44451541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 30385356 - 30385392
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtatttt 49  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30385356 tgaatagtgcacattataaaattgcgacatgtatttt 30385392  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 38153488 - 38153528
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaa 53  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  38153488 tgaatagtgcacattataaaaatgcgacatgtattttgaaa 38153528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 40771983 - 40772025
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||||||| |  ||||||||||||||||||    
T  40771983 tgaatagtgcacattgtaaaaattggacatgtattttgaaacg 40772025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 3485419 - 3485459
Alignment:
Q  14 gaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    |||||||||| ||||||||||| ||||||||||||| ||||    
T  3485419 gaatagtgcatattgtaaaattacgacatgtattttaaaac 3485459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 9006994 - 9007035
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaa 53  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  9006994 atgaataatgcacattgtaaaattgcgacatgtattttgaaa 9007035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 43444751 - 43444791
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaa 53  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  43444751 tgaataatgcacattgtaaaattgcgacatgtattttgaaa 43444791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 7799898 - 7799856
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  7799898 tgaatagtgcacattgcaaaaatgcgacatgtattttgaaacg 7799856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 11931743 - 11931701
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaac 54  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  11931743 atgaataatgcatattgtaaaattgcgacatgtattttgaaac 11931701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 42133804 - 42133763
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaa 53  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  42133804 atgaatagtgcacattttaaaattacgacatgtattttgaaa 42133763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 33607428 - 33607387
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaa 53  Q
    |||||||||||||||||||||| |  ||||||||||||||||    
T  33607428 atgaatagtgcacattgtaaaaattggacatgtattttgaaa 33607387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 24916459 - 24916501
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    |||||||| ||||||||||||||| ||||||||||||||||||    
T  24916459 tgaatagtacacattgtaaaattgtgacatgtattttgaaacg 24916501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 10696842 - 10696799
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||||    
T  10696842 atgaatagtgcacattgcaaaatagcgacgtgtattttgaaacg 10696799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 24992349 - 24992391
Alignment:
Q  13 tgaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||||||||||||| |  ||||||||||||||||||    
T  24992349 tgaatagtgcacattgtaaaactatgacatgtattttgaaacg 24992391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 7750096 - 7750133
Alignment:
Q  12 atgaatagtgcacattgtaaaattgcgacatgtatttt 49  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  7750096 atgaatagtgcacattgtaaaattacgacgtgtatttt 7750133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 12007845 - 12007885
Alignment:
Q  15 aatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||||||||| | ||||| |||||||||||||||||||||    
T  12007845 aatagtgcacaatataaaaatgcgacatgtattttgaaacg 12007885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 217088 - 217129
Alignment:
Q  14 gaatagtgcacattgtaaaattgcgacatgtattttgaaacg 55  Q
    ||||| ||||||||||||||||||||| ||||||||||||||    
T  217088 gaatattgcacattgtaaaattgcgacttgtattttgaaacg 217129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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