View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_46 (Length: 354)
Name: NF18315_low_46
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 5 - 347
Target Start/End: Complemental strand, 8375154 - 8374807
Alignment:
| Q |
5 |
agatggacatcatcattaactgtcctcaatgaacataaattagctgctgctgagatttgtaaacaaaccatgtattg-----atgagaattgagagctga |
99 |
Q |
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| T |
8375154 |
agatggatagcagcattaactgtcctcaaagaacataaattagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagctta |
8375055 |
T |
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| Q |
100 |
aaaaatttgtgtatgaattgtagatgagagtttattgttttannnnnnngataaaagatgagtgtttatgaaaacaatgaatgggagtgagtggtatata |
199 |
Q |
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| T |
8375054 |
aaaaatttgtgtatgaattgtagatgagagtttattgttttatttttttgataaaagatgagagtttatgaaaacaatgaatgggagtgagtggtatata |
8374955 |
T |
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| Q |
200 |
tatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttct |
299 |
Q |
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| T |
8374954 |
tatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatgagcaaccgtaacattagattagacttggcctttttattgactttct |
8374855 |
T |
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| Q |
300 |
atgtattctctaattaataaatttcaacaagtttggctgcctttgctt |
347 |
Q |
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| T |
8374854 |
atgtattctctaattaataaatttcaacaagtttggctgccttggctt |
8374807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 8439949 - 8440083
Alignment:
| Q |
5 |
agatggacatcatcattaactgtcctcaatgaacataaattagctgctgctgagatttgtaaacaaacca-----tgtattgatgagaattgagagctga |
99 |
Q |
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| T |
8439949 |
agatggatagcagcattaactgtcctcaaagaacataaattagctgctgctgagatttgtaaacaaaccatgtattgtattgatgagaattgagagctta |
8440048 |
T |
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| Q |
100 |
aaaaatttgtgtatgaattgtagatgagagtttat |
134 |
Q |
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| T |
8440049 |
aaaaatttgtgtatgaattgtagatgagagtttat |
8440083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 155 - 322
Target Start/End: Original strand, 8440070 - 8440230
Alignment:
| Q |
155 |
agatgagtgtttatgaaaacaatgaatgggagtgagtggtatatatatagacagaggaatgaaatggatcaaaattagaatagatgggaagaagtcatga |
254 |
Q |
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| T |
8440070 |
agatgagagtttatgaaaacaatgaatgggagtgggtggtatatatatagatag-ggaagagaatggatcaaaactagaatagatgggaagaagtcacaa |
8440168 |
T |
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| Q |
255 |
gcaaccgtaacattagattagacttggcctttttattgac-tttctatgtattctctaattaataaatt |
322 |
Q |
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| T |
8440169 |
ctaaccgta-----agattagacttggcctttttattgacttttctatgtat--tctaattaataaatt |
8440230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 8417980 - 8418062
Alignment:
| Q |
5 |
agatggacatcatcattaactgtcctcaatgaacataaattagctgctgctgagatttgtaaacaaaccatgtattgatgaga |
87 |
Q |
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| T |
8417980 |
agatggataacagcattaactgtcctcaaagaagataaattagctgctgctgagaattgtatactaaccatgtattgatgaga |
8418062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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