View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_47 (Length: 352)

Name: NF18315_low_47
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_47
NF18315_low_47
[»] chr2 (11 HSPs)
chr2 (48-336)||(10470605-10470893)
chr2 (47-278)||(10542614-10542845)
chr2 (164-336)||(10505198-10505370)
chr2 (203-326)||(10486682-10486804)
chr2 (93-216)||(9082736-9082859)
chr2 (226-329)||(7483396-7483500)
chr2 (97-166)||(10847034-10847104)
chr2 (47-217)||(9077412-9077582)
chr2 (260-326)||(10491161-10491230)
chr2 (72-174)||(10858526-10858629)
chr2 (240-336)||(10858371-10858470)
[»] chr4 (1 HSPs)
chr4 (68-197)||(17733856-17733986)
[»] chr1 (1 HSPs)
chr1 (68-197)||(18489334-18489464)
[»] chr5 (1 HSPs)
chr5 (47-250)||(33579733-33579937)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 48 - 336
Target Start/End: Complemental strand, 10470893 - 10470605
Alignment:
Q  48 ggcatattgtgatgttaattcagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccct 147  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||||||||    
T  10470893 ggcatattgtgatgttgattcagcctctaatgtagataacgtgaagtctacttttgaggcattctcatgtctttgtcctaacttggttgttcatagccct 10470794  T
Q  148 agctacttcaaggtgttatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgcattagtagaagcactttcgcttagagtcgta 247  Q
    ||||||||||||||||||| |||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||    
T  10470793 agctacttcaaggtgttatgcttacttcatgagctgcaagttcccatctccacggcaatcatttattgcattagtagcagcacttacgcttagagtcata 10470694  T
Q  248 atcacattcggcattctagaaccaagcacatggaccttgatttgttgtttattcgagaaaaagatcttgccaaatctctagttgtgact 336  Q
    |||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||||||||  |||||||||| |||||||||||||    
T  10470693 atcacatttggcattctagaaccaaacacctagaccttgatttgttgtttgttcgagaaaaagtccttgccaaatttctagttgtgact 10470605  T

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Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 47 - 278
Target Start/End: Complemental strand, 10542845 - 10542614
Alignment:
Q  47 aggcatattgtgatgttaattcagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccc 146  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  10542845 aggcatattgtgatgttgattcagcctctgatgtagataatgtgaggtcgacttccggggcattcttatgtcttggtcctaacttggtggttcatagccc 10542746  T
Q  147 tagctacttcaaggtgttatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgcattagtagaagcactttcgcttagagtcgt 246  Q
     ||| ||||||| |||||||||||||| ||||| |||||||||| |||||||  |  ||| |||||| ||  ||||  |||||||||   || ||||| |    
T  10542745 cagccacttcaacgtgttatccttactgcatgagctgcaagttcccatctccttgctaattatttatcgcgatagtcaaagcacttttagtttgagtcat 10542646  T
Q  247 aatcacattcggcattctagaaccaagcacat 278  Q
    ||||  |||||||||||||||||||| |||||    
T  10542645 aatctgattcggcattctagaaccaaacacat 10542614  T

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Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 336
Target Start/End: Complemental strand, 10505370 - 10505198
Alignment:
Q  164 tatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgcattagtagaagcactttcgcttagagtcgtaatcacattcggcattc 263  Q
    |||||||||||||||| ||||| |||| ||||||| || |||||||||||| |||||||  ||||||  | |||| ||||| |||||| |||||||||||    
T  10505370 tatccttacttcatgagctgcaggttcccatctcctcgccaatcatttattacattagtcaaagcacacttgctttgagtcataatcagattcggcattc 10505271  T
Q  264 tagaaccaagcacatggaccttgatttgttgtttattcgagaaaaagatcttgccaaatctctagttgtgact 336  Q
    ||||||||  |||||||||||||||||||||||| || ||||||||| ||||||||||||  |||||| ||||    
T  10505270 tagaaccacacacatggaccttgatttgttgtttgtttgagaaaaagctcttgccaaatcaatagttgggact 10505198  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 203 - 326
Target Start/End: Complemental strand, 10486804 - 10486682
Alignment:
Q  203 caatcatttattgcattagtagaagcactttcgcttagagtcgtaatcacattcggcattctagaaccaagcacatggaccttgatttgttgtttattcg 302  Q
    ||||||||||| ||||||||  |||||||||| ||  |||||||| ||| ||| |||||||||||||||| |||||||||||||| ||||||| | || |    
T  10486804 caatcatttatagcattagtcaaagcactttcact--gagtcgtattcagatttggcattctagaaccaaacacatggaccttgaattgttgtgtttttg 10486707  T
Q  303 agaaaaaga-tcttgccaaatctct 326  Q
    ||||||| | |||||||||||||||    
T  10486706 agaaaaaaactcttgccaaatctct 10486682  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 93 - 216
Target Start/End: Original strand, 9082736 - 9082859
Alignment:
Q  93 gtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctacttc-aaggtgttatccttacttcatgaactgcaagttct 191  Q
    |||| ||| ||||||||||||||||||| |||||||| |  |  |||| |||| |||||||||| |||||| |||||||||||||||| |||||| |||     
T  9082736 gtctcctttcggggcattcttatgtcttggtcctaacata-tcattcaaagccttagctacttctaaggtggtatccttacttcatgagctgcaatttcc 9082834  T
Q  192 catctccacgtcaatcatttattgc 216  Q
    |||||||||  ||||||||||||||    
T  9082835 catctccacaccaatcatttattgc 9082859  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 7483396 - 7483500
Alignment:
Q  226 agcactttcgcttagagtcgtaatcacattcggcattctagaaccaagcacatggaccttgatttgttgtttattcgagaaaaaga-tcttgccaaatct 324  Q
    ||||| ||||||| ||||| |||||| ||| | |||||||||||||| | |||||| ||||||||||||| | || |||||||| | | |||||||||||    
T  7483396 agcaccttcgctttgagtcataatcagatttgacattctagaaccaaacccatggagcttgatttgttgtgtttttgagaaaaaaacttttgccaaatct 7483495  T
Q  325 ctagt 329  Q
    |||||    
T  7483496 ctagt 7483500  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 10847104 - 10847034
Alignment:
Q  97 acttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctac-ttcaaggtgttat 166  Q
    |||||| ||||||||||||||||| ||||| ||||||| ||||||| |||||||||| || ||||||||||    
T  10847104 acttccagggcattcttatgtcttggtccttacttggtggttcataaccctagctacgtttaaggtgttat 10847034  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 9077412 - 9077582
Alignment:
Q  47 aggcatattgtgatgttaattcagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccc 146  Q
    |||| |||||||||||| |||   ||||| ||||||||||| ||| |||| ||| | ||||||| ||||| ||| ||||||||||  |  |||||||||     
T  9077412 aggcctattgtgatgttgatttgacctctgatgtagataacatgaggtctgctttcagggcattgttatgccttggtcctaactt-atgattcatagcct 9077510  T
Q  147 tagctac-ttcaaggtgttatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgca 217  Q
    ||||||| || ||||||||| ||||| ||||||| | ||  |||| |||||||||  ||||  |||||||||    
T  9077511 tagctacttttaaggtgttaaccttatttcatgagcagcgcgttcccatctccacaccaatactttattgca 9077582  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 10491230 - 10491161
Alignment:
Q  260 attctagaaccaagcacatggaccttgatttgttgtttattcgagaaaaaga---tcttgccaaatctct 326  Q
    ||||||||||||| |||||||||||||||||||||| | || |||||||| |   |||||||||||||||    
T  10491230 attctagaaccaaacacatggaccttgatttgttgtgtttttgagaaaaaaaaactcttgccaaatctct 10491161  T

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Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 10858629 - 10858526
Alignment:
Q  72 ctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctacttc-aaggtgttatcctt 170  Q
    |||| ||||||||||  ||| |||||  | ||||||| ||||||||||| || |||||||||| |||||||||||||| ||| || |||| ||||||| |    
T  10858629 ctctgatgtagataatctgaggtctaactgcggggcactcttatgtcttagttctaacttggtggttcatagccctagttacctctaaggcgttatccat 10858530  T
Q  171 actt 174  Q
    ||||    
T  10858529 actt 10858526  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 336
Target Start/End: Complemental strand, 10858470 - 10858371
Alignment:
Q  240 gagtcgtaatcacattcggcattctagaaccaagcac---atggaccttgatttgttgtttattcgagaaaaagatcttgccaaatctctagttgtgact 336  Q
    ||||| |||||  |||||||||||||||||||| ||    ||||||||||||||||| ||| ||||| ||||   ||||| |||||||||||| ||||||    
T  10858470 gagtcctaatctgattcggcattctagaaccaaacaacatatggaccttgatttgttctttgttcgataaaattttcttggcaaatctctagtcgtgact 10858371  T

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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 17733986 - 17733856
Alignment:
Q  68 cagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctacttc-aaggtgttat 166  Q
    |||||||| || |||||| |  || ||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||| |||||| ||||||||||    
T  17733986 cagcctctgatatagatatcacgaggtctacttccgaggcattcttatgtcttggtcctaacttggtgattcatagccctagatacttctaaggtgttat 17733887  T
Q  167 ccttacttcatgaactgcaagttctcatctc 197  Q
    |||| |||||||| |||||||||| ||||||    
T  17733886 ccttgcttcatgagctgcaagttcccatctc 17733856  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 197
Target Start/End: Complemental strand, 18489464 - 18489334
Alignment:
Q  68 cagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccctagctacttc-aaggtgttat 166  Q
    |||||||| || |||||| |  || ||||||||||| |||||||||||||||| |||||||||||||  ||||||||||||| |||||| ||||||||||    
T  18489464 cagcctctgatatagatatcacgaggtctacttccgaggcattcttatgtcttggtcctaacttggtgattcatagccctagatacttctaaggtgttat 18489365  T
Q  167 ccttacttcatgaactgcaagttctcatctc 197  Q
    |||| |||| ||| |||||||||| ||||||    
T  18489364 ccttgcttcttgagctgcaagttcccatctc 18489334  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 47 - 250
Target Start/End: Original strand, 33579733 - 33579937
Alignment:
Q  47 aggcatattgtgatgttaattcagcctctaatgtagataacgtgaagtctacttccggggcattcttatgtctttgtcctaacttggttgttcatagccc 146  Q
    |||| |||||||||||| |||   | ||| |||| || |||||||  ||||  |||||| |||||||||||| |  ||||||||||||  ||||||||||    
T  33579733 aggcctattgtgatgttgattagacgtctgatgtggaaaacgtgagatctaaatccgggtcattcttatgtcatgatcctaacttggtgcttcatagccc 33579832  T
Q  147 tagctacttcaa-ggtgttatccttacttcatgaactgcaagttctcatctccacgtcaatcatttattgcattagtagaagcactttcgcttagagtcg 245  Q
    |||||||||| | ||||||  |||||||||||||||||| |||||||||| |||||  ||| || ||||||||  ||  |||||||||||||| |||||     
T  33579833 tagctacttctacggtgttggccttacttcatgaactgcgagttctcatcgccacgctaatgatctattgcatccgtcaaagcactttcgcttcgagtca 33579932  T
Q  246 taatc 250  Q
    |||||    
T  33579933 taatc 33579937  T

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