View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_49 (Length: 351)
Name: NF18315_low_49
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 2597201 - 2596917
Alignment:
| Q |
23 |
tacctagttgatgttatatagaatatgtgcttctgctgttattttaacttgattgttggctattctgtataattttgttttagtctggttataatagttt |
122 |
Q |
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| T |
2597201 |
tacctagttgatgttatttagaatatgtgcttctactgttatttcaacttgattcttggctattctgtataattttgttttagtctggttataatagttt |
2597102 |
T |
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| Q |
123 |
taaattggatttgtgaactatataatatcatccaaagttgaagtgctagtagtaatgcaccttcaggtctagaattcacaagctagatatccaatctcca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2597101 |
taaattggatttgtgaactatataatatcatccaaagttgaagtgctagtagtaatgcaccttcaggtctagaattcacaagctagatatccaatctgca |
2597002 |
T |
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| Q |
223 |
taaatttgaagtgctagctattgttagttcttgcttgcgactggaagttcttcatacttgcaattgcattattttgataaatgcc |
307 |
Q |
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| T |
2597001 |
taaattcgaagtgctagctattgttagttcttgcttgcgaccggaagttcttcatacttgcaattgcattattttgatcaatgcc |
2596917 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 172
Target Start/End: Complemental strand, 2291290 - 2291199
Alignment:
| Q |
78 |
ttggctattctgtataattttgttttagtctggttataatagttttaaattggatttgtgaactatataatatcatccaaagttgaagtgctagt |
172 |
Q |
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||||||||| |||| ||||||||| |||| |||||| |||||||||||| ||||||||||||||| || | ||||||||||||||||||||| |
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| T |
2291290 |
ttggctattatgtaaaattttgttatagttcagttatactagttttaaattagatttgtgaactata--at-tgatccaaagttgaagtgctagt |
2291199 |
T |
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