View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_low_5 (Length: 728)
Name: NF18315_low_5
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_5 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 160 - 728
Target Start/End: Original strand, 39779403 - 39779971
Alignment:
| Q |
160 |
aatcaaggaaagatatgagatccattacctcactgatctggccttcaagattttaattgtgatcttggttccaagttctcaaactacctttaatcttttt |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39779403 |
aatcaaggaaagatatgagatccattacctcactgatccggccttcaagattttaattgtgatcttggttccaagttctcaaactacctttaatcttttt |
39779502 |
T |
|
| Q |
260 |
gagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgccattgtttttgaacaaatttcttataacctagaagatccgcccaatatt |
359 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39779503 |
gagtttttcctttagtacaaattctccccaaccatccacgtatgagagtgccattgtttttgaacaaatttcttataacctagaagatccgcccaatatt |
39779602 |
T |
|
| Q |
360 |
tccacatacattgaggactaggacctcaattctcctcatcgatggtaatgagactgggcaatggtcagataggcctctgatcaaagcattcattactttt |
459 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39779603 |
tcaacatacattgaggacgacgacctcaattctcctcatcgatggtaatgagactgggcaatggtcagatagtcctctgatcaaagcattcattactttt |
39779702 |
T |
|
| Q |
460 |
attcatctctatctatcatctttagattacttagaactcaagaaataaaacaagttgcgctagcatgttcacttatagattaattactctgttctctcaa |
559 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39779703 |
attcatctctatcgatcatctttagattacttagaactcaagaaataaaacaagttgcgctaacatgttcacttatagattaattactctgttctctcaa |
39779802 |
T |
|
| Q |
560 |
aggaatggtaaatttgagatttaccatgcattcaaaagaaaattgtgaatgtccttctcagtttgaaacaccgtctaaatcacgtctttcaacnnnnnnn |
659 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39779803 |
aggaatggtaaatttgagatttaccatgcattcaaaagaaaattgtgaatgtccttctcagtttgaaacaccgtctaaatcacgtctttcaacttttttt |
39779902 |
T |
|
| Q |
660 |
nattaacttttaaaagagagattgtgaatgtccttctcaatattttttctgttgatg-atgtccatctca |
728 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
39779903 |
tattagcttttaaaaga-agattgtgaatgtccttctcaatattttttctgtttgtgaatgtccatctca |
39779971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 39777392 - 39777554
Alignment:
| Q |
1 |
ttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttgcaccggaggtccattgaaaatttgctct |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
39777392 |
ttcagacctcgagtgcataggttcaaacacgcagttgtgtaaactttggggagcaaaaccggatctgggttgtaccggaggtccaccgaaaattcgctct |
39777491 |
T |
|
| Q |
101 |
caaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc |
163 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39777492 |
caaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc |
39777554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 1094548 - 1094385
Alignment:
| Q |
1 |
ttcagacctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttgca-ccggaggtccattgaaaatttgctc |
99 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||||||| || | |||||||||||||| ||||||||| |||||| |||| ||||||||||| |
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| T |
1094548 |
ttcaggcctcgagtgcacgagttcacacacgcagttgtgtaaaccttagggagcaaaaccggatttgggttgcacccggagatccaccgaaaatttgctt |
1094449 |
T |
|
| Q |
100 |
tcaaggcaatggtttttgtcatggcacaacaattctcttctatctttcctagctatccaaaatc |
163 |
Q |
| |
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||| | || || |||||||| |||||||||| |||||||||||||||||| |||| ||||||| |
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| T |
1094448 |
tcaggacagtgacttttgtcacggcacaacaactctcttctatctttcctatctattcaaaatc |
1094385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 1090769 - 1090696
Alignment:
| Q |
21 |
gttcggacacgcagttgtgtaaactttggagagcaaaaccggatctgggttgcaccggaggtccattgaaaatt |
94 |
Q |
| |
|
|||| |||||| ||||||||||| |||| ||| |||||||||| |||||||||| | |||||||| ||||||| |
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| T |
1090769 |
gttcagacacgtagttgtgtaaatcttggggagtaaaaccggatttgggttgcactgaaggtccatcgaaaatt |
1090696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 34249353 - 34249486
Alignment:
| Q |
8 |
ctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccggaggtccattgaaaatttgctctcaaggc |
106 |
Q |
| |
|
||||||||||| |||| |||| |||||| |||||| |||| ||||||||| |||| || ||||||| ||||||||| |||||||| || ||| || |
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| T |
34249353 |
ctcgagtgcacgagttcagacatgcagttatgtaaatcttggggagcaaaactggataatgagttgcactggaggtccaccgaaaattttctttcagagc |
34249452 |
T |
|
| Q |
107 |
aatggtttttgtcatggcacaacaattctcttct |
140 |
Q |
| |
|
||||||||| || |||||||||| ||||||| |
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|
| T |
34249453 |
aatggttttgaccacggcacaacaaaactcttct |
34249486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 146
Target Start/End: Original strand, 29360253 - 29360373
Alignment:
| Q |
26 |
gacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggc |
124 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||||| | ||||||||||||||||||| ||||||||||| |||||||| || ||||||| ||| |
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|
| T |
29360253 |
gacacgcagttgtgtaaaccttgaggagcaaaatcggatattgggttgcaccggaggtccaccgaaaatttgctttcaaggcagtgacttttgtc-gggc |
29360351 |
T |
|
| Q |
125 |
acaacaattctcttctatcttt |
146 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
29360352 |
acaacaattctcttatatcttt |
29360373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 5716902 - 5717026
Alignment:
| Q |
26 |
gacacgcagttgtgtaaactttggagagcaaaaccggatctgggttgcaccggaggtccattgaaaatttgctctcaaggcaatggtttttgtcatggca |
125 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||| |||||||||||||| || || | |||||||| ||| |||| |||||||| || |||| |
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|
| T |
5716902 |
gacacgcagttgtgtaaattttggggagcaaaatcggacttgggttgcaccggaagtacaccggaaatttgcattcagggcagtggtttttaccacggca |
5717001 |
T |
|
| Q |
126 |
caacaattctcttctatctttccta |
150 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
5717002 |
caacaactctcttctatctttccta |
5717026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 7 - 157
Target Start/End: Complemental strand, 8385 - 8234
Alignment:
| Q |
7 |
cctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatctggg-ttgcaccggaggtccattgaaaatttgctctcaagg |
105 |
Q |
| |
|
|||| ||||||| |||| |||||| |||||||||||| |||| |||||||||||||| | ||||||| ||||||||||| ||||||||| ||| || |
|
|
| T |
8385 |
cctcaagtgcacgagttcagacacgtagttgtgtaaacattggggagcaaaaccggatattaaattgcaccagaggtccattggaaatttgctttcatgg |
8286 |
T |
|
| Q |
106 |
caatggtttttgtcatggcacaacaattctcttctatctttcctagctatcc |
157 |
Q |
| |
|
|| | | ||||| || ||| |||||| ||||||||||||||| || |||||| |
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|
| T |
8285 |
cagttgcttttgccacggcgcaacaactctcttctatctttcgtatctatcc |
8234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 9229369 - 9229234
Alignment:
| Q |
12 |
agtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggatct-gggttgcaccggaggtccattgaaaatttgctctcaaggcaatg |
110 |
Q |
| |
|
||||||| |||| |||| ||| |||||||||| ||||||||||||||||||| | |||||||| | |||||| || |||||||| || ||| | | || |
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|
| T |
9229369 |
agtgcacgagttcagacatgcaattgtgtaaaccttggagagcaaaaccggatattgggttgcatctgaggtctatcgaaaattttctttcagagtagtg |
9229270 |
T |
|
| Q |
111 |
gtttttgtcatggcacaacaattctcttctatcttt |
146 |
Q |
| |
|
||||| | || ||||||||||||||||||||||||| |
|
|
| T |
9229269 |
gttttggccacggcacaacaattctcttctatcttt |
9229234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 148
Target Start/End: Original strand, 25678066 - 25678208
Alignment:
| Q |
7 |
cctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccggaggtccattgaaaatttgctctcaagg |
105 |
Q |
| |
|
|||||||||||| |||| || ||| |||||||||||| ||||| ||||||||||||| ||| |||||||||||||||| ||||||||||| ||| |
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|
| T |
25678066 |
cctcgagtgcacgagttcagatacgtagttgtgtaaaccttggaaagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcattt |
25678165 |
T |
|
| Q |
106 |
caatggtttttgtcatggcacaacaattctcttctatctttcc |
148 |
Q |
| |
|
|| ||| |||| || | ||||||| |||||||||||||||| |
|
|
| T |
25678166 |
cagtggctttttccacgacacaacatctctcttctatctttcc |
25678208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 148
Target Start/End: Original strand, 25358412 - 25358553
Alignment:
| Q |
8 |
ctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccggaggtccattgaaaatttgctctcaaggc |
106 |
Q |
| |
|
||||||||||| |||| || || |||||||||||| |||| |||||||||||||| ||| |||||||||||||||| ||||||||||| ||| | |
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|
| T |
25358412 |
ctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgctttcatttc |
25358511 |
T |
|
| Q |
107 |
aatggtttttgtcatggcacaacaattctcttctatctttcc |
148 |
Q |
| |
|
| || |||| || ||||||||| |||||||||||||||| |
|
|
| T |
25358512 |
agtgactttttccacggcacaacatctctcttctatctttcc |
25358553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 25391442 - 25391534
Alignment:
| Q |
7 |
cctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccggaggtccattgaaaatttgct |
98 |
Q |
| |
|
|||||||||||| |||| || || |||||||||||| |||| |||||||||||||| ||| |||||||||||||||| ||||||||||| |
|
|
| T |
25391442 |
cctcgagtgcacgagttcagatacatagttgtgtaaaccttggggagcaaaaccggatattggattgcaccggaggtccaccgaaaatttgct |
25391534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 40709194 - 40709267
Alignment:
| Q |
7 |
cctcgagtgcacaggttcggacacgcagttgtgtaaactttggagagcaaaaccggat-ctgggttgcaccgga |
79 |
Q |
| |
|
||||||||||| ||||| |||| ||||| |||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
40709194 |
cctcgagtgcatgggttcagacatgcagtaatgtaaactttggggagcaaaaccggatattgggttgcaccgga |
40709267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 27049173 - 27049206
Alignment:
| Q |
27 |
acacgcagttgtgtaaactttggagagcaaaacc |
60 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
27049173 |
acacgtagttgtgtaaactttggagagcaaaacc |
27049206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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