View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_50 (Length: 343)
Name: NF18315_low_50
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 38 - 328
Target Start/End: Original strand, 18578181 - 18578471
Alignment:
| Q |
38 |
tttacaacatttgcaaattttatatttcatgataatgagcttttgcaactgcccataaacatttgatgcttaaaaacattttacgcttaagagttcagtg |
137 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
18578181 |
tttacaacatttgcaaattttatatttcatgataatgagcttttgcaactgtccataaacatttgacgcttaaaaacattttacgcttaagagttcattg |
18578280 |
T |
|
| Q |
138 |
caataagaaataaaaaatggatcaaaagtttaaaattgaaccaactcatgtttatcattcttatgaacttattgacaatgttaaagtgtgacctcttcat |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
18578281 |
caataagaaataaaaaatggatcaaaagtttaaaattgaaacaactcatgtttatcattcttatgaactgattgacaatgttgaagtgtgacctcttcat |
18578380 |
T |
|
| Q |
238 |
ccttatgaattatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcaggggaagaaag |
328 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18578381 |
ccttatgaatcatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcaggcgaagaaag |
18578471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 30496095 - 30495992
Alignment:
| Q |
223 |
gtgtgacctcttcatccttatgaattatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcagggga |
322 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||| || | ||||||||||| |||||||||||||||| |
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| T |
30496095 |
gtgtgacctcttcatcgttatgaattatattcattctttctacacttcattactgcttac--ttggtcaagatttctttctgtctttgtttttcagggga |
30495998 |
T |
|
| Q |
323 |
agaaag |
328 |
Q |
| |
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|||||| |
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| T |
30495997 |
agaaag |
30495992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 30536438 - 30536335
Alignment:
| Q |
223 |
gtgtgacctcttcatccttatgaattatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcagggga |
322 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||| || | ||||||||||| |||||||||||||||| |
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| T |
30536438 |
gtgtgacctcttcatcgttatgaattatattcattctttctacacttcattactgcttac--ttggtcaagatttctttctgtctttgtttttcagggga |
30536341 |
T |
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| Q |
323 |
agaaag |
328 |
Q |
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|||||| |
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| T |
30536340 |
agaaag |
30536335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 38 - 328
Target Start/End: Original strand, 10340217 - 10340507
Alignment:
| Q |
38 |
tttacaacatttgcaaattttatatttcatgataatgagcttttgcaactgcccataaacatttgatgcttaaaaacattttacgcttaagagttcagtg |
137 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
10340217 |
tttacagcatttgcaaattttatatttcatgataatgagcttttgcaactgtccataaacatttgacgcttaaaaacattttacgcttaagagttcattg |
10340316 |
T |
|
| Q |
138 |
caataagaaataaaaaatggatcaaaagtttaaaattgaaccaactcatgtttatcattcttatgaacttattgacaatgttaaagtgtgacctcttcat |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
10340317 |
caataagaaataaaaaatggatcaaaagtttaaaattgaaccaactcatgtttatcattcttatgaactgattgacaatgttgaagtgtgacctcttcat |
10340416 |
T |
|
| Q |
238 |
ccttatgaattatattcattctttctacacttcattattacttacttttggccatgctttctttctgtatttgtttttcaggggaagaaag |
328 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
10340417 |
ccttatgaattatagtcattctttctacacttcattattacttacttttggccatgctttctttctgaatttgtttttcagaggaagaaag |
10340507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 38 - 109
Target Start/End: Original strand, 29171554 - 29171625
Alignment:
| Q |
38 |
tttacaacatttgcaaattttatatttcatgataatgagcttttgcaactgcccataaacatttgatgctta |
109 |
Q |
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||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| ||||| |
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| T |
29171554 |
tttacgacatttgcaaaatttatatttcatgatagtgagcttttgcaactgtccataaacatttgacgctta |
29171625 |
T |
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