View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_51 (Length: 343)

Name: NF18315_low_51
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_51
NF18315_low_51
[»] chr5 (1 HSPs)
chr5 (16-334)||(12078687-12079005)
[»] scaffold0606 (1 HSPs)
scaffold0606 (17-334)||(5324-5646)
[»] chr6 (8 HSPs)
chr6 (44-304)||(16740033-16740297)
chr6 (15-325)||(14079638-14079949)
chr6 (70-303)||(31719660-31719897)
chr6 (31-200)||(27988611-27988785)
chr6 (51-223)||(14758166-14758339)
chr6 (243-312)||(12399009-12399077)
chr6 (44-225)||(13243079-13243264)
chr6 (248-306)||(14172099-14172157)
[»] chr2 (7 HSPs)
chr2 (44-332)||(26815777-26816070)
chr2 (56-202)||(19498820-19498969)
chr2 (44-209)||(27745895-27746064)
chr2 (16-161)||(14867091-14867240)
chr2 (247-332)||(27744528-27744613)
chr2 (50-106)||(33240539-33240595)
chr2 (50-106)||(33248460-33248516)
[»] chr3 (7 HSPs)
chr3 (15-197)||(19643557-19643743)
chr3 (111-334)||(7920748-7920962)
chr3 (17-200)||(54285073-54285260)
chr3 (56-200)||(12412004-12412153)
chr3 (227-332)||(10738109-10738213)
chr3 (51-102)||(1464151-1464202)
chr3 (16-106)||(19225577-19225671)
[»] scaffold1681 (1 HSPs)
scaffold1681 (44-306)||(1009-1276)
[»] chr7 (11 HSPs)
chr7 (18-223)||(11376663-11376871)
chr7 (44-223)||(15304461-15304643)
chr7 (205-300)||(24811146-24811242)
chr7 (56-204)||(12598084-12598235)
chr7 (28-234)||(16812748-16812955)
chr7 (16-138)||(9065336-9065462)
chr7 (50-105)||(10254568-10254623)
chr7 (44-148)||(20598186-20598294)
chr7 (50-93)||(3779090-3779133)
chr7 (247-293)||(20598305-20598351)
chr7 (66-102)||(16307959-16307995)
[»] chr1 (6 HSPs)
chr1 (15-200)||(23917655-23917843)
chr1 (16-146)||(23550034-23550168)
chr1 (56-98)||(10153890-10153932)
chr1 (246-334)||(21616753-21616840)
chr1 (57-105)||(22640150-22640198)
chr1 (50-102)||(25399234-25399286)
[»] chr4 (4 HSPs)
chr4 (47-302)||(32468525-32468776)
chr4 (86-303)||(15193562-15193782)
chr4 (15-102)||(10328579-10328666)
chr4 (50-102)||(23087547-23087599)
[»] chr8 (2 HSPs)
chr8 (16-148)||(15598574-15598709)
chr8 (50-106)||(24635174-24635230)
[»] scaffold0340 (1 HSPs)
scaffold0340 (44-161)||(17817-17938)
[»] scaffold0083 (1 HSPs)
scaffold0083 (56-106)||(49736-49786)


Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 16 - 334
Target Start/End: Original strand, 12078687 - 12079005
Alignment:
Q  16 gttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaaatgatttga 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12078687 gttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaaatgatttga 12078786  T
Q  116 atcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggtagtg 215  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12078787 atcctttccttgataaggaattatctattcttttccaaaagagacatagctgcagcttcgtacagtgcacatgagaatgttggagataatggaggtagtg 12078886  T
Q  216 gtcgtacactttgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacg 315  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12078887 gtcgtacgctttgtccttcattgcaccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacg 12078986  T
Q  316 cttgacatcctatgcttct 334  Q
    |||||||||| ||||||||    
T  12078987 cttgacatccaatgcttct 12079005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 334
Target Start/End: Original strand, 5324 - 5646
Alignment:
Q  17 ttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaaa---tgattt 113  Q
    ||||||| |||||||||||||||| | ||||| ||||| ||||||||| |||||||  |||||| |||||||| ||||||||||| |||||   ||||||    
T  5324 ttgaagagtgccagcgcatcaatagaatcattcgagaagcttgatcaaacatcattaatttgttgcttgatttcgttaatgtcctgtgaaagaatgattt 5423  T
Q  114 -gaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggta 212  Q
     |||||| ||||||| ||| |||||| | ||||||||||||| |||||| ||  | |||||| ||||||||||||||||||| ||||| || ||||| ||    
T  5424 tgaatccattccttgataaagaattaaccgttcttttccaaaggagacacagtcgtagcttcatacaatgcacatgagaatgctggaggtagtggagata 5523  T
Q  213 gtggtcgtacactttgtccttcattgctcctt-aatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaa--cta 309  Q
    |||||| |||| ||||| |||||||| ||||| || ||||||||||| |||||||||||| |||| ||||||| |||| ||||||||||||||||   ||    
T  5524 gtggtcatacattttgttcttcattg-tccttcaaggaaagtgacattcattgaccttctgacac-tccagaaacattatgcttgatcttcagaattata 5621  T
Q  310 tcaacgcttgacatcctatgcttct 334  Q
    |||  ||||||||||| ||||||||    
T  5622 tcatagcttgacatccaatgcttct 5646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 304
Target Start/End: Original strand, 16740033 - 16740297
Alignment:
Q  44 tcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa---atgattt-gaatcctttccttgctaaggaattat 139  Q
    ||||||||||| |||| |||  || ||||| |||||| ||||||||||||| |||||||||||   ||||||| |||||| |||| || |||||||||||    
T  16740033 tcatttgagaagcttggtcattcaacattgatttgttgcttgatttggttattgtcctatgaagtaatgattttgaatccattccatgataaggaattat 16740132  T
Q  140 ctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggtagtggtcgtacactttgtccttcattgc 239  Q
    | ||||||||||||| |||||| | ||| || ||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||     
T  16740133 ccgttcttttccaaaggagacacaactgtagtttcatacaatgcatatgagaatgttagagatagtggaggtagtggtcgtacactttgtccttaattgt 16740232  T
Q  240 tccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcag 304  Q
     | | |||| ||||||||| |||||||||||| |||  | |||||||||||||||||||||||||    
T  16740233 acttcaatgtaagtgacattcattgaccttctgacatcttcagaaccattgtgcttgatcttcag 16740297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 14079638 - 14079949
Alignment:
Q  15 tgttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa---atgat 111  Q
    ||||||||| || || |||||||||| | |||||||||||  |||||||  || ||||| ||| || |||||||||||||||||| ||||||   |||||    
T  14079638 tgttgaagagtgtcaacgcatcaatagagtcatttgagaattttgatcattcaacattgatttattgcttgatttggttaatgtcatatgaaggaatgat 14079737  T
Q  112 tt-gaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggagg 210  Q
    || ||||| |||||||| |||||||||| |  |||||||||||| |||||| | ||| ||||| |||||||||||||||||||||| ||| || || |||    
T  14079738 tttgaatcatttccttgataaggaattaacccttcttttccaaaggagacacaactgtagctttgtacaatgcacatgagaatgttagaggtagtgaagg 14079837  T
Q  211 tagtggtcgtacactttgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactat 310  Q
     ||||||||| |||||||||||||||||  | | ||||| | |||||||||||||||||    | ||| |||||| ||  ||||||||||||||| |||     
T  14079838 cagtggtcgtgcactttgtccttcattgtacttcaatgataatgacatccattgacctt---tcccttgcagaacaatcatgcttgatcttcagagctac 14079934  T
Q  311 caacgcttgacatcc 325  Q
    ||  |||||||||||    
T  14079935 cattgcttgacatcc 14079949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 70 - 303
Target Start/End: Complemental strand, 31719897 - 31719660
Alignment:
Q  70 attggtttgtttcttgatttggttaatgtcctatgaa---atg-atttgaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagc 165  Q
    |||| ||||||  ||||||||||||||||| ||||||   ||| ||||||||||||||||||  ||||||||| | |||||||| ||| ||||||| |      
T  31719897 attgatttgttgtttgatttggttaatgtcttatgaaggaatgtatttgaatcctttccttgaaaaggaattaaccgttctttttcaatagagacacata 31719798  T
Q  166 tgcagcttcgtacaatgcacatgagaatgttggagataatggaggtagtggtcgtacact-ttgtccttcattgctccttaa--tgaaagtgacatccat 262  Q
    || | ||| |||||| || ||| |||||||||||| || ||   |||||||||||||||| ||||||||| |||  ||||||  ||||| ||||||||||    
T  31719797 tgtatcttagtacaacgcgcatcagaatgttggaggtagtg--agtagtggtcgtacactgttgtccttc-ttgtaccttaacttgaaaatgacatccat 31719701  T
Q  263 tgaccttctaacacttccagaaccattgtgcttgatcttca 303  Q
    ||||||||| | |  | |||||||||||||| |||||||||    
T  31719700 tgaccttctgatatcttcagaaccattgtgcatgatcttca 31719660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 27988611 - 27988785
Alignment:
Q  31 cgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaaatga----tttgaatcctttcctt 126  Q
    ||||||| || | ||||| ||||| |||||||||||||| ||| |||||| ||||||||||||||| || |||||||| |    |||| | |||||||||    
T  27988611 cgcatcactagagtcattagagaagcttgatcaagcatcgttgatttgttgcttgatttggttaatttcatatgaaataatgattttggaacctttcctt 27988710  T
Q  127 gctaaggaattatctgttcttttccaaaagagacatag-ctgcagcttcgtacaatgcacatgagaatgttggag 200  Q
      |||||||||| | |||||||| |||| |||||| ||  |  |||||||||||||||| ||| |||||||||||    
T  27988711 tataaggaattaaccgttctttttcaaaggagacacagttttaagcttcgtacaatgcaaatgggaatgttggag 27988785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 14758166 - 14758339
Alignment:
Q  51 agaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatgatttg-aatcctttccttgctaaggaattatctgttct 146  Q
    |||| ||||||||| || ||||| |||||| |||||| ||||||||||| |||||   ||| ||||| ||||| ||||||| || ||||||  ||||||     
T  14758166 agaagcttgatcaatcaacattgatttgttgcttgatatggttaatgtcttatgaaggaataatttgaaatccattccttgatagggaattgactgttcc 14758265  T
Q  147 tttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggtagtggtcgtaca 223  Q
     |||||| ||||||| | ||| ||||| |||| |||| ||||| |||||||||| || ||||||||||||| |||||    
T  14758266 attccaatagagacacaactgtagctt-gtactatgcgcatga-aatgttggag-tagtggaggtagtggttgtaca 14758339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 243 - 312
Target Start/End: Original strand, 12399009 - 12399077
Alignment:
Q  243 ttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatca 312  Q
    ||||||||| |||||| ||||||||||||||||||| |||||||||  || |||||||||| ||| ||||    
T  12399009 ttaatgaaaatgacattcattgaccttctaacactt-cagaaccatcatgtttgatcttcaaaaccatca 12399077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 225
Target Start/End: Original strand, 13243079 - 13243264
Alignment:
Q  44 tcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaaatgat----ttgaatcctttccttgctaaggaattat 139  Q
    |||||||| || ||||||||| ||||| || |  ||| ||||||||||||| |||| ||||||   ||    |||||||||||||||| || |||||||     
T  13243079 tcatttgaaaagcttgatcaaacatcactgatgagttgcttgatttggttattgtcatatgaaggaataaacttgaatcctttccttgatatggaattaa 13243178  T
Q  140 ctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacat-gagaatgttggagataatggaggtagtggtcgtacact 225  Q
    | ||| ||||||||   ||||| |  || ||||| ||||||||||||| || ||||||| || || |||| ||||||||||||||||    
T  13243179 cagtttttttccaatgaagacacatttgtagctttgtacaatgcacatggaaaatgttgaaggtagtgga-gtagtggtcgtacact 13243264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 306
Target Start/End: Complemental strand, 14172157 - 14172099
Alignment:
Q  248 gaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaa 306  Q
    ||||||||| |||||||||| ||| |||  | |||||||||||||||||||||| ||||    
T  14172157 gaaagtgacgtccattgaccctctgacatgttcagaaccattgtgcttgatctttagaa 14172099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 44 - 332
Target Start/End: Original strand, 26815777 - 26816070
Alignment:
Q  44 tcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa---atgattt-gaatcctttccttgctaaggaattat 139  Q
    ||||||||||| ||||||||  |||||||| |||||| |||||||||||||||||||||||||   ||||||| |||||||||| ||| ||  ||||||     
T  26815777 tcatttgagaagcttgatcatacatcattgatttgttgcttgatttggttaatgtcctatgaaggaatgattttgaatcctttctttgatattgaattaa 26815876  T
Q  140 ctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggtagtggtcgtacact-ttgtccttcattg 238  Q
    |  || |||| |||  |||||| || || |||||||||||||||||||| |||||||||||  | ||||||||||||| ||||| | || ||||||||||    
T  26815877 ccattatttttcaatggagacacagttgtagcttcgtacaatgcacatgggaatgttggaggcagtggaggtagtggttgtacattgttttccttcattg 26815976  T
Q  239 ctccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacgcttgacatcctatgctt 332  Q
        ||||||||| |||||||||| |||||| |  ||||||||||||||||||| |||||||| ||||||||||| |||| |||||| ||||||    
T  26815977 tcttttaatgaaattgacatccatcgaccttttgtcacttccagaaccattgtgattgatctttagaactatcaaagcttaacatccaatgctt 26816070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 56 - 202
Target Start/End: Complemental strand, 19498969 - 19498820
Alignment:
Q  56 cttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatga-tttgaatcctttccttgctaaggaattatctgttcttttcc 151  Q
    ||||||||| | |||||| |||||| ||||||||||||||||||||||||   ||||| ||||||||||||||||| | ||||||| || ||||||||||    
T  19498969 cttgatcaaacctcattgatttgttgcttgatttggttaatgtcctatgaaggaatgattttgaatcctttccttgatgaggaattgtccgttcttttcc 19498870  T
Q  152 aaaagagacatagctgcagcttcgtacaa-tgcacatgagaatgttggagat 202  Q
     ||||||||| || || |||||||||||| |||||||||| |||||||||||    
T  19498869 -aaagagacacagttgtagcttcgtacaattgcacatgag-atgttggagat 19498820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 209
Target Start/End: Complemental strand, 27746064 - 27745895
Alignment:
Q  44 tcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa---atg-atttgaatcctttccttgctaaggaattat 139  Q
    |||||||||||  | |||||  |||||||| |||||| |||||||||||||||||||||||||   ||| |||||||||||||| |   ||||||||||     
T  27746064 tcatttgagaagttcgatcattcatcattgatttgttgcttgatttggttaatgtcctatgaaggaatggatttgaatcctttcatgtataaggaattaa 27745965  T
Q  140 ctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggag 209  Q
      |||||||| |||  |||||| || || |||||||||||||||||||| ||||||||||| || |||||    
T  27745964 acgttctttttcaatggagacacagttgtagcttcgtacaatgcacatgggaatgttggaggtagtggag 27745895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 14867091 - 14867240
Alignment:
Q  16 gttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatga-t 111  Q
    |||||||| ||||| ||||||| || | || || ||||||||||||||| |||||||| | |||| ||||||||||||||||||||||||   ||||| |    
T  14867091 gttgaagagtgccaacgcatcattagagtcgttagagaaacttgatcaaacatcattgatatgttgcttgatttggttaatgtcctatgaaagaatgatt 14867190  T
Q  112 ttgaatcctttccttgctaaggaattatctgttcttttccaaaagagaca 161  Q
    ||||| |||||||||| | ||||||||   ||| |||||||| |||||||    
T  14867191 ttgaaacctttccttgatgaggaattaatcgttgttttccaatagagaca 14867240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 332
Target Start/End: Complemental strand, 27744613 - 27744528
Alignment:
Q  247 tgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacgcttgacatcctatgctt 332  Q
    ||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||| ||| ||| || ||   ||||||||| ||||||    
T  27744613 tgaaagtgacatccattgatcttctgacatttccaaaaccattgtgcttgatcgtcataaccattaaaatttgacatccaatgctt 27744528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 33240539 - 33240595
Alignment:
Q  50 gagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa 106  Q
    ||||| ||||||||  || ||||| |||||| |||||||||||||||||||||||||    
T  33240539 gagaagcttgatcattcaacattgatttgttgcttgatttggttaatgtcctatgaa 33240595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 33248460 - 33248516
Alignment:
Q  50 gagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa 106  Q
    ||||| ||||||||  || ||||| |||||| |||||||||||||||||||||||||    
T  33248460 gagaagcttgatcattcaacattgatttgttgcttgatttggttaatgtcctatgaa 33248516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 197
Target Start/End: Complemental strand, 19643743 - 19643557
Alignment:
Q  15 tgttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa---atgat 111  Q
    ||||||||| || ||||||||||| ||| |  ||||||||||||||||||||||||||| ||| |   | ||||||||||||||||||||||   |||||    
T  19643743 tgttgaagagtgtcagcgcatcaaaatagttgtttgagaaacttgatcaagcatcattgatttatggatggatttggttaatgtcctatgaaggaatgat 19643644  T
Q  112 tt-gaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttg 197  Q
    || |||||||||| ||| |||||| ||| | ||||||||||||| |||||| ||||| ||||||||||| |||| ||||||||||||    
T  19643643 tttgaatcctttcgttgataaggagttaaccgttcttttccaaaggagacacagctgtagcttcgtacattgcatatgagaatgttg 19643557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 111 - 334
Target Start/End: Complemental strand, 7920962 - 7920748
Alignment:
Q  111 tttgaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggagg 210  Q
    |||||||| |||||||| |||||||||| ||||||||||| ||   ||||| |  || |||||||||||||||||||| ||||||||||||||           
T  7920962 tttgaatcatttccttgataaggaattaactgttcttttcaaatgaagacacatatgtagcttcgtacaatgcacatgggaatgttggagata------- 7920870  T
Q  211 tagtggtcgtacactttgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactat 310  Q
      ||||||||||||||||||||||| ||  | | |||||||||||||  ||||| |||||| |||  | |||||||||||||||||| |||| ||| ||     
T  7920869 --gtggtcgtacactttgtccttcagtgtacttcaatgaaagtgacacacattggccttctgacatcttcagaaccattgtgcttgaccttcggaaatac 7920772  T
Q  311 caacgcttgacatcctatgcttct 334  Q
    ||| |||| |||||| ||||||||    
T  7920771 caaagcttaacatccaatgcttct 7920748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 54285260 - 54285073
Alignment:
Q  17 ttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa---atgattt 113  Q
    ||||||| || |||||||||| || | |  || ||||| ||||||||| || ||||| |||||| ||||||||| |||| ||||||||||   |||||||    
T  54285260 ttgaagagtgtcagcgcatcattagagttgttagagaagcttgatcaatcaacattgatttgttgcttgatttgattaaagtcctatgaatgaatgattt 54285161  T
Q  114 -gaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggag 200  Q
     ||| | |||||||| |||  ||||||| |||||||||||||  |||||||| || ||||||||||||||||||||||||||||||||    
T  54285160 tgaaacatttccttgataaataattatccgttcttttccaaagaagacatagttgtagcttcgtacaatgcacatgagaatgttggag 54285073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 56 - 200
Target Start/End: Complemental strand, 12412153 - 12412004
Alignment:
Q  56 cttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaaa----tgatt-tgaatcctttccttgctaaggaattatctgttcttttc 150  Q
    ||||||||  |||||||| |||||| ||||||||||||||||||| ||||||    ||||| |||| |||||||||| |||||||||| | |||||||||    
T  12412153 cttgatcatacatcattgatttgttgcttgatttggttaatgtccaatgaaaggaatgattctgaaacctttccttgataaggaattaaccgttcttttc 12412054  T
Q  151 caaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggag 200  Q
    || | ||||||||| || ||||||||||| |||| |||||||||||||||    
T  12412053 cataggagacatagttgtagcttcgtacattgcatatgagaatgttggag 12412004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 227 - 332
Target Start/End: Original strand, 10738109 - 10738213
Alignment:
Q  227 tgtccttcattgctccttaatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacgcttgacatcct 326  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||| |||| ||||||| | |||||| |||| ||||||||  |||||||||||     
T  10738109 tgtccttcattgttctttaatgaaagtgacatccattgaccttctaacac-tccaaaaccattatacttgattttcataactatcatagcttgacatcca 10738207  T
Q  327 atgctt 332  Q
    ||||||    
T  10738208 atgctt 10738213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 1464151 - 1464202
Alignment:
Q  51 agaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtccta 102  Q
    |||| ||||||||| || ||||| |||||| |||||||||||||||||||||    
T  1464151 agaagcttgatcaatcaacattgatttgttgcttgatttggttaatgtccta 1464202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 19225577 - 19225671
Alignment:
Q  16 gttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaa----gcatcattggtttgtttcttgatttggttaatgtcctatgaa 106  Q
    |||||||| || || | ||||| ||||||| || ||||||||| |||||    ||||||||| |||||| |||||||| |||||| |||||||||    
T  19225577 gttgaagagtgtcaacacatcattatattcgttagagaaactttatcaattaagcatcattgatttgttgcttgatttagttaatatcctatgaa 19225671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1681 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold1681
Description:

Target: scaffold1681; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 44 - 306
Target Start/End: Complemental strand, 1276 - 1009
Alignment:
Q  44 tcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaaa---tga-tttgaatcctttccttgctaaggaatt-a 138  Q
    ||||||||||| ||||||||  || ||||| ||| || |||||||||||||||||| ||| |||   ||| ||||||||||||||||| ||||||||| |    
T  1276 tcatttgagaagcttgatcattcaacattgatttcttgcttgatttggttaatgtcatataaaagaatgagtttgaatcctttccttgataaggaattca 1177  T
Q  139 tctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggtagtggtcgtac-actttgtccttcatt 237  Q
    || ||||||||||||  |||||| || || |||||||||||||||||||||||||||||||| || |||| ||||||||| ||| |   |||||||  ||    
T  1176 tc-gttcttttccaatggagacacagttgtagcttcgtacaatgcacatgagaatgttggaggtagtgga-gtagtggtcatacaagactgtccttattt 1079  T
Q  238 gctcctt-aatgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaa 306  Q
    |  |||| | ||| | ||||||||||||||||||| | |  | |||||||||||||| ||||||||||||    
T  1078 gtaccttcactgacaatgacatccattgaccttctgatatcttcagaaccattgtgcatgatcttcagaa 1009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 11376663 - 11376871
Alignment:
Q  18 tgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa---atga-ttt 113  Q
    |||||| |||||||||||||| | | ||||||||||| | ||||||   ||||||| |||||| |||||||||||||||||||||||||   |||| |||    
T  11376663 tgaagagtgccagcgcatcaa-agagtcatttgagaagcctgatcattgatcattgatttgttgcttgatttggttaatgtcctatgaaggaatgaattt 11376761  T
Q  114 gaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggtag 213  Q
    ||||| ||||||||  ||||||||| | ||||||||||||  |||||| | ||| ||| || |||||||||||  |||||||||||  || |||||||||    
T  11376762 gaatcatttccttgacaaggaattaaccgttcttttccaatggagacacaactgtagcctcatacaatgcacacaagaatgttggatgtagtggaggtag 11376861  T
Q  214 tggtcgtaca 223  Q
    ||||||||||    
T  11376862 tggtcgtaca 11376871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 15304461 - 15304643
Alignment:
Q  44 tcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa---atga-tttgaatcctttccttgctaaggaattat 139  Q
    |||||||||||||||||||   || ||||| |||||| |||||||| |||  |||||||||||   |||| |||||||||||| |||| ||||||||||     
T  15304461 tcatttgagaaacttgatcttccaacattgatttgttgcttgatttagttggtgtcctatgaaggaatgaatttgaatccttttcttgataaggaattaa 15304560  T
Q  140 ctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggtagtggtcgtaca 223  Q
    | ||| |||| ||| ||||||| | ||| ||||| ||| |||| ||||| ||||||||||| |||| || ||||||||||||||    
T  15304561 ccgttatttttcaatagagacacaactgtagctttgtataatgaacatgggaatgttggaggtaataga-gtagtggtcgtaca 15304643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 300
Target Start/End: Complemental strand, 24811242 - 24811146
Alignment:
Q  205 tggaggtagtggtcgtacactttgtccttcattgctccttaa-tgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatct 300  Q
    ||||||||||||||||||||||||||||||  ||  | ||   | ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24811242 tggaggtagtggtcgtacactttgtccttctatgtacattcgctaaaagtgacatccattgaccttctaacacttccagaaccattgtacttgatct 24811146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 12598235 - 12598084
Alignment:
Q  56 cttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatg-atttgaatcctttccttgctaaggaattatctgttcttttcc 151  Q
    ||||||||| |||||||| |||||| |||||||||||||||||  |||||   |||| ||||||| |||||||||| |||||||||| ||||| |||| |    
T  12598235 cttgatcaaacatcattgatttgttgcttgatttggttaatgttttatgaaggaatgaatttgaaacctttccttgataaggaattaactgttatttt-c 12598137  T
Q  152 aaaagagacatagctgcagcttcgtacaa-tgcacatgagaatgttggagataa 204  Q
     ||||||||| || || |||||||||||| |||||||| | |||||||||||||    
T  12598136 taaagagacacagttgtagcttcgtacaattgcacatgtg-atgttggagataa 12598084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 234
Target Start/End: Original strand, 16812748 - 16812955
Alignment:
Q  28 cagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatg-atttgaatcctttc 123  Q
    ||||||||||| ||| |||||| |||| ||||||||  || ||||| ||| || |||||||||||||||||| |||||   |||| ||||||||| ||||    
T  16812748 cagcgcatcaa-atagtcatttaagaagcttgatcattcaacattgatttattgcttgatttggttaatgtcatatgaaggaatgtatttgaatcatttc 16812846  T
Q  124 cttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggagataatggaggtagtggtcgtaca 223  Q
     ||| ||| |||||| | |||||||||||| | | ||| |  || || || |||||||||||||| ||||||||||| || |||| ||||||||||||||    
T  16812847 attgataacgaattaaccgttcttttccaatataaacacaattgtag-ttagtacaatgcacatgggaatgttggaggtagtgga-gtagtggtcgtaca 16812944  T
Q  224 ctttgtccttc 234  Q
      |||||||||    
T  16812945 aattgtccttc 16812955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 9065336 - 9065462
Alignment:
Q  16 gttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctat---gaaatg-at 111  Q
    |||||||| ||||| ||||||| || | || || ||||||||||||||| |||||||| |||| | ||||||||||||||||||||||   |||||| ||    
T  9065336 gttgaagagtgccaacgcatcattagagtcgttagagaaacttgatcaaacatcattgatttgctgcttgatttggttaatgtcctatcaagaaatgaat 9065435  T
Q  112 ttgaatcctttccttgctaaggaatta 138  Q
    ||||| |||||| ||| ||| ||||||    
T  9065436 ttgaaacctttctttgataaagaatta 9065462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 10254623 - 10254568
Alignment:
Q  50 gagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga 105  Q
    ||||| ||||||||| || ||||| |||||| ||||||||||||||||||||||||    
T  10254623 gagaagcttgatcaatcaacattgatttgttgcttgatttggttaatgtcctatga 10254568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 148
Target Start/End: Original strand, 20598186 - 20598294
Alignment:
Q  44 tcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatg-atttgaatcctttccttgctaaggaattat 139  Q
    ||||||||||| ||||||||  || ||||| |||||| |||||||| ||||||||| | |||   |||| ||||||||||||||| || ||||||||||     
T  20598186 tcatttgagaagcttgatcattcaacattgatttgttgcttgatttagttaatgtcatgtgaaggaatgaatttgaatcctttccctgataaggaattaa 20598285  T
Q  140 ctgttcttt 148  Q
    | |||||||    
T  20598286 ccgttcttt 20598294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 3779133 - 3779090
Alignment:
Q  50 gagaaacttgatcaagcatcattggtttgtttcttgatttggtt 93  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||    
T  3779133 gagaaacttgatcaaacatcattgatttgttgcttgatttggtt 3779090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 293
Target Start/End: Original strand, 20598305 - 20598351
Alignment:
Q  247 tgaaagtgacatccattgaccttctaacacttccagaaccattgtgc 293  Q
    ||||||||||||||||||||||||||| |  |||| |||||||||||    
T  20598305 tgaaagtgacatccattgaccttctaatatctccaaaaccattgtgc 20598351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 16307995 - 16307959
Alignment:
Q  66 catcattggtttgtttcttgatttggttaatgtccta 102  Q
    |||||||| |||||||||||||||||||| |||||||    
T  16307995 catcattgatttgtttcttgatttggttattgtccta 16307959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 23917655 - 23917843
Alignment:
Q  15 tgttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatga- 110  Q
    ||||||||| ||||||| |||||| | | ||||||||||| ||||||||  || ||||| ||| || ||||||||||||||||||||||||   |||||     
T  23917655 tgttgaagagtgccagcacatcaa-agagtcatttgagaagcttgatcattcaacattgatttcttccttgatttggttaatgtcctatgatggaatgag 23917753  T
Q  111 tttgaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaatgcacatgagaatgttggag 200  Q
    ||||||||||||||||| |||| |||||   ||||||||||||  |||||| |  || |||||| || |||||||||| |||||||||||    
T  23917754 tttgaatcctttccttgataagtaattaatcgttcttttccaatggagacacatttgtagcttcctaaaatgcacatgggaatgttggag 23917843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 23550034 - 23550168
Alignment:
Q  16 gttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatga-t 111  Q
    ||||||||||| ||||||||||||| | |  |||||||| | ||||||| || ||||| |||||| ||||| ||||||| || | |||||   ||||| |    
T  23550034 gttgaagaatgtcagcgcatcaatagagttgtttgagaagcatgatcaatcaacattgatttgttgcttgacttggttagtgccttatgaaggaatgatt 23550133  T
Q  112 ttgaatcctttccttgctaaggaattatctgttct 146  Q
    ||||||| ||| |||| ||| |||||||| |||||    
T  23550134 ttgaatcattttcttgataatgaattatccgttct 23550168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 10153890 - 10153932
Alignment:
Q  56 cttgatcaagcatcattggtttgtttcttgatttggttaatgt 98  Q
    ||||||||| |||||||| |||||| |||||||||||||||||    
T  10153890 cttgatcaaacatcattgatttgttgcttgatttggttaatgt 10153932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 21616753 - 21616840
Alignment:
Q  246 atgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttcagaactatcaacgcttgacatcctatgcttct 334  Q
    |||||| |||||| |||||||  ||| | ||||| ||||||| | |||||||||||| |||||||||  |||||||||||  |||||||    
T  21616753 atgaaaatgacattcattgactctctgaaacttc-agaaccactatgcttgatcttctgaactatcatagcttgacatccattgcttct 21616840  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 22640150 - 22640198
Alignment:
Q  57 ttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga 105  Q
    |||||||| || ||||| |||||| ||||||||||||||||| ||||||    
T  22640150 ttgatcaatcaacattgatttgttgcttgatttggttaatgttctatga 22640198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 25399234 - 25399286
Alignment:
Q  50 gagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtccta 102  Q
    ||||| |||||| || || ||||| |||||| |||||||||||||||||||||    
T  25399234 gagaagcttgattaatcaacattgatttgttgcttgatttggttaatgtccta 25399286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 302
Target Start/End: Complemental strand, 32468776 - 32468525
Alignment:
Q  47 tttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatga-tttgaatcctttccttgctaaggaattatctg 142  Q
    |||||||| ||||||| | ||| |||| ||| || ||||||||||||||||||||||||   ||||| ||| |||  ||||||||   |||||||| |||    
T  32468776 tttgagaagcttgatccatcataattgatttcttgcttgatttggttaatgtcctatgatggaatgaattttaattatttccttgacgaggaattaactg 32468677  T
Q  143 ttcttttccaaaagagacatagctgcagcttcgtacaat-gcacatgagaatgttggagataatggaggtagtggtcgtacactttgtccttcattgctc 241  Q
    |||||||||||  || |||  | || ||||||||| ||| ||||||| |||||||||||         ||||||||||||||||||||||||| |||  |    
T  32468676 ttcttttccaatggacaca--gttgtagcttcgtataattgcacatgggaatgttggag---------gtagtggtcgtacactttgtccttctttgtac 32468588  T
Q  242 cttaa--tgaaagtgacatccattgaccttctaacacttccagaaccattgtgcttgatcttc 302  Q
    ||| |  ||| | ||||||||||||||||||| |||  | |||||||||||||||||||||||    
T  32468587 cttcacttgacaatgacatccattgaccttctgacatattcagaaccattgtgcttgatcttc 32468525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 303
Target Start/End: Original strand, 15193562 - 15193782
Alignment:
Q  86 atttggttaatgtcctatgaa---atg-atttgaatcctttccttgctaaggaattatctgttcttttccaaaagagacatagctgcagcttcgtacaat 181  Q
    |||||||||||||||||||||   ||  |||||||||||||||||| |||||||||| | ||  ||||||||  |||||| |  || |||||||||||||    
T  15193562 atttggttaatgtcctatgaaggaatatatttgaatcctttccttgataaggaattaaccgt--ttttccaatggagacacaaatgtagcttcgtacaat 15193659  T
Q  182 gcacatgagaatgttggagataatggaggtagtggtcgtacact-ttgtccttcattgctccttaatg-aaagtgacatccattgaccttctaacacttc 279  Q
    |||||||  |||||||||| |  |||| |||||||||||||| | ||||||||| |||  |||| | | ||| ||  ||||||||||||||| | |  |     
T  15193660 gcacatggaaatgttggaggtggtgga-gtagtggtcgtacattgttgtccttctttgtaccttcacgtaaaatggaatccattgaccttctgatatctt 15193758  T
Q  280 cagaaccattgtgcttgatcttca 303  Q
    ||||||||||||||||||||||||    
T  15193759 cagaaccattgtgcttgatcttca 15193782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 10328666 - 10328579
Alignment:
Q  15 tgttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtccta 102  Q
    ||||||| | ||| ||| |||||||||| || || ||||| ||||||||| |||||||  |||||| |||||||||||||||||||||    
T  10328666 tgttgaatagtgcaagcacatcaatatagtccttagagaagcttgatcaatcatcattaatttgttgcttgatttggttaatgtccta 10328579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 23087547 - 23087599
Alignment:
Q  50 gagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtccta 102  Q
    ||||| ||||||||| || ||||| |||||| |||||| ||||||||||||||    
T  23087547 gagaagcttgatcaatcaacattgatttgttgcttgatatggttaatgtccta 23087599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 15598574 - 15598709
Alignment:
Q  16 gttgaagaatgccagcgcatcaatatattcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatg---aaatg-at 111  Q
    |||| ||| ||||||||||||||| || |||   ||||| ||||||||  || ||||| |||||| |||||||| ||||||||||||||   ||||| ||    
T  15598574 gttggagagtgccagcgcatcaat-tagtcaccagagaagcttgatcattcaacattgatttgttgcttgattttgttaatgtcctatgaaaaaatgaat 15598672  T
Q  112 ttgaatcctttccttgctaaggaattatctgttcttt 148  Q
    ||||||||||||| || |||||||||| | |||||||    
T  15598673 ttgaatcctttccctgataaggaattaaccgttcttt 15598709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 24635174 - 24635230
Alignment:
Q  50 gagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa 106  Q
    ||||| ||||||||| |||||||| |||||| ||| |||||||||||||| ||||||    
T  24635174 gagaagcttgatcaaacatcattgatttgttgcttaatttggttaatgtcatatgaa 24635230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 17817 - 17938
Alignment:
Q  44 tcatttgagaaacttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatga---aatg-atttgaatcctttccttgctaaggaattat 139  Q
    ||||||||||| | ||||||| || ||||| |||||| |||||||||||||||| | |||||   | || ||||||||  |||||||| ||||||||||     
T  17817 tcatttgagaagcatgatcaaacaacattgatttgttgcttgatttggttaatggcatatgaatgagtgaatttgaatattttccttgataaggaattaa 17916  T
Q  140 ctgttcttttccaaaagagaca 161  Q
    | |||||||   ||||||||||    
T  17917 ccgttctttagtaaaagagaca 17938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 49736 - 49786
Alignment:
Q  56 cttgatcaagcatcattggtttgtttcttgatttggttaatgtcctatgaa 106  Q
    ||||||| || ||||||| |||||| |||||| ||||||||||||||||||    
T  49736 cttgatcgagaatcattgatttgttgcttgatatggttaatgtcctatgaa 49786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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