View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_52 (Length: 342)

Name: NF18315_low_52
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_52
NF18315_low_52
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-34)||(27450-27483)
[»] chr8 (8 HSPs)
chr8 (1-34)||(32536883-32536916)
chr8 (1-34)||(32537325-32537358)
chr8 (1-34)||(38023802-38023835)
chr8 (1-34)||(38024368-38024401)
chr8 (1-32)||(41859488-41859519)
chr8 (1-32)||(41859935-41859966)
chr8 (5-34)||(37639893-37639922)
chr8 (1-34)||(37640434-37640467)
[»] chr7 (4 HSPs)
chr7 (1-34)||(668357-668390)
chr7 (1-34)||(38072076-38072109)
chr7 (1-31)||(668943-668973)
chr7 (1-34)||(7677595-7677628)
[»] chr6 (7 HSPs)
chr6 (1-34)||(15083155-15083188)
chr6 (1-34)||(22580661-22580694)
chr6 (1-34)||(22587147-22587180)
chr6 (1-34)||(33479875-33479908)
chr6 (1-32)||(33480467-33480498)
chr6 (1-34)||(15082575-15082608)
chr6 (1-34)||(22580113-22580146)
[»] chr5 (5 HSPs)
chr5 (1-34)||(33002653-33002686)
chr5 (1-32)||(686594-686625)
chr5 (1-32)||(687187-687218)
chr5 (1-32)||(15183856-15183887)
chr5 (1-34)||(15183267-15183300)
[»] chr4 (13 HSPs)
chr4 (1-34)||(10424301-10424334)
chr4 (1-34)||(21165625-21165658)
chr4 (1-34)||(26611120-26611153)
chr4 (1-34)||(29651169-29651202)
chr4 (1-34)||(31836296-31836329)
chr4 (1-34)||(36865555-36865588)
chr4 (1-34)||(45230543-45230576)
chr4 (1-33)||(21166213-21166245)
chr4 (1-32)||(31835326-31835357)
chr4 (1-31)||(26610524-26610554)
chr4 (1-34)||(10424896-10424929)
chr4 (1-34)||(29650592-29650625)
chr4 (1-34)||(39522553-39522586)
[»] chr3 (14 HSPs)
chr3 (1-34)||(3971170-3971203)
chr3 (1-34)||(3998678-3998711)
chr3 (1-34)||(36750275-36750308)
chr3 (1-34)||(38922921-38922954)
chr3 (1-34)||(44686432-44686465)
chr3 (1-34)||(45242244-45242277)
chr3 (1-34)||(45242824-45242857)
chr3 (1-34)||(52492064-52492097)
chr3 (1-32)||(3971744-3971775)
chr3 (1-32)||(3998103-3998134)
chr3 (1-32)||(41755677-41755708)
chr3 (1-32)||(44687002-44687033)
chr3 (1-31)||(41756272-41756302)
chr3 (1-34)||(38923502-38923535)
[»] chr2 (3 HSPs)
chr2 (1-34)||(21471195-21471228)
chr2 (1-34)||(21471791-21471824)
chr2 (1-34)||(37548178-37548211)
[»] chr1 (9 HSPs)
chr1 (1-34)||(16270386-16270419)
chr1 (1-34)||(16270986-16271019)
chr1 (1-34)||(38931083-38931116)
chr1 (1-34)||(51975064-51975097)
chr1 (1-32)||(9948741-9948772)
chr1 (1-32)||(51974615-51974646)
chr1 (1-31)||(38930490-38930520)
chr1 (1-34)||(6076705-6076738)
chr1 (1-34)||(48971883-48971916)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-29)||(1-29)


Alignment Details
Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 27483 - 27450
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  27483 atcacaaattcaacaaccactttgaccaccactg 27450  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32536883 - 32536916
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  32536883 atcacaaattcaacaaccactttgaccaccactg 32536916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32537358 - 32537325
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  32537358 atcacaaattcaacaaccactttgaccaccactg 32537325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38023802 - 38023835
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38023802 atcacaaattcaacaaccactttgaccaccactg 38023835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38024401 - 38024368
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38024401 atcacaaattcaacaaccactttgaccaccactg 38024368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 41859488 - 41859519
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  41859488 atcacaaattcaacaaccactttgaccaccac 41859519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41859966 - 41859935
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  41859966 atcacaaattcaacaaccactttgaccaccac 41859935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 37639893 - 37639922
Alignment:
Q  5 caaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||    
T  37639893 caaattcaacaaccactttgaccaccactg 37639922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37640467 - 37640434
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    |||||||||||||||||||| |||||||||||||    
T  37640467 atcacaaattcaacaaccaccttgaccaccactg 37640434  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 668357 - 668390
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  668357 atcacaaattcaacaaccactttgaccaccactg 668390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38072076 - 38072109
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38072076 atcacaaattcaacaaccactttgaccaccactg 38072109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 668973 - 668943
Alignment:
Q  1 atcacaaattcaacaaccactttgaccacca 31  Q
    |||||||||||||||||||||||||||||||    
T  668973 atcacaaattcaacaaccactttgaccacca 668943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7677595 - 7677628
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    |||||||||||||||| |||||||||||||||||    
T  7677595 atcacaaattcaacaatcactttgaccaccactg 7677628  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15083188 - 15083155
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  15083188 atcacaaattcaacaaccactttgaccaccactg 15083155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22580694 - 22580661
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  22580694 atcacaaattcaacaaccactttgaccaccactg 22580661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 22587180 - 22587147
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  22587180 atcacaaattcaacaaccactttgaccaccactg 22587147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33479875 - 33479908
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  33479875 atcacaaattcaacaaccactttgaccaccactg 33479908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 33480498 - 33480467
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  33480498 atcacaaattcaacaaccactttgaccaccac 33480467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15082575 - 15082608
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  15082575 atcacaaattcaacaactactttgaccaccactg 15082608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22580113 - 22580146
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  22580113 atcacaaattcaacaactactttgaccaccactg 22580146  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33002686 - 33002653
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  33002686 atcacaaattcaacaaccactttgaccaccactg 33002653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 686594 - 686625
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  686594 atcacaaattcaacaaccactttgaccaccac 686625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 687218 - 687187
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  687218 atcacaaattcaacaaccactttgaccaccac 687187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 15183887 - 15183856
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  15183887 atcacaaattcaacaaccactttgaccaccac 15183856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 15183267 - 15183300
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  15183267 atcacaaattcaacaaccattttgaccaccactg 15183300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10424301 - 10424334
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  10424301 atcacaaattcaacaaccactttgaccaccactg 10424334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21165625 - 21165658
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21165625 atcacaaattcaacaaccactttgaccaccactg 21165658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 26611153 - 26611120
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  26611153 atcacaaattcaacaaccactttgaccaccactg 26611120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 29651202 - 29651169
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  29651202 atcacaaattcaacaaccactttgaccaccactg 29651169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 31836329 - 31836296
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  31836329 atcacaaattcaacaaccactttgaccaccactg 31836296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36865588 - 36865555
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  36865588 atcacaaattcaacaaccactttgaccaccactg 36865555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 45230543 - 45230576
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  45230543 atcacaaattcaacaaccactttgaccaccactg 45230576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21166245 - 21166213
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccact 33  Q
    |||||||||||||||||||||||||||||||||    
T  21166245 atcacaaattcaacaaccactttgaccaccact 21166213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 31835326 - 31835357
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  31835326 atcacaaattcaacaaccactttgaccaccac 31835357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 26610524 - 26610554
Alignment:
Q  1 atcacaaattcaacaaccactttgaccacca 31  Q
    |||||||||||||||||||||||||||||||    
T  26610524 atcacaaattcaacaaccactttgaccacca 26610554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 10424929 - 10424896
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    |||| |||||||||||||||||||||||||||||    
T  10424929 atcataaattcaacaaccactttgaccaccactg 10424896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29650592 - 29650625
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  29650592 atcacaaattcaacaaccactttggccaccactg 29650625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 39522553 - 39522586
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  39522553 atcacaaattcaacaaccacttttaccaccactg 39522586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3971170 - 3971203
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3971170 atcacaaattcaacaaccactttgaccaccactg 3971203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 3998711 - 3998678
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  3998711 atcacaaattcaacaaccactttgaccaccactg 3998678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36750308 - 36750275
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  36750308 atcacaaattcaacaaccactttgaccaccactg 36750275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38922921 - 38922954
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38922921 atcacaaattcaacaaccactttgaccaccactg 38922954  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44686432 - 44686465
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  44686432 atcacaaattcaacaaccactttgaccaccactg 44686465  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 45242244 - 45242277
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  45242244 atcacaaattcaacaaccactttgaccaccactg 45242277  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45242857 - 45242824
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  45242857 atcacaaattcaacaaccactttgaccaccactg 45242824  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 52492064 - 52492097
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  52492064 atcacaaattcaacaaccactttgaccaccactg 52492097  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 3971775 - 3971744
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  3971775 atcacaaattcaacaaccactttgaccaccac 3971744  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 3998103 - 3998134
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  3998103 atcacaaattcaacaaccactttgaccaccac 3998134  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 41755677 - 41755708
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  41755677 atcacaaattcaacaaccactttgaccaccac 41755708  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 44687033 - 44687002
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  44687033 atcacaaattcaacaaccactttgaccaccac 44687002  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 41756302 - 41756272
Alignment:
Q  1 atcacaaattcaacaaccactttgaccacca 31  Q
    |||||||||||||||||||||||||||||||    
T  41756302 atcacaaattcaacaaccactttgaccacca 41756272  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38923535 - 38923502
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    |||||||||||| |||||||||||||||||||||    
T  38923535 atcacaaattcagcaaccactttgaccaccactg 38923502  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 21471195 - 21471228
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21471195 atcacaaattcaacaaccactttgaccaccactg 21471228  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21471824 - 21471791
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  21471824 atcacaaattcaacaaccactttgaccaccactg 21471791  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37548178 - 37548211
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  37548178 atcacaaattcaacaaccactttgaccaccactg 37548211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 16270386 - 16270419
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  16270386 atcacaaattcaacaaccactttgaccaccactg 16270419  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 16271019 - 16270986
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  16271019 atcacaaattcaacaaccactttgaccaccactg 16270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 38931116 - 38931083
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  38931116 atcacaaattcaacaaccactttgaccaccactg 38931083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 51975097 - 51975064
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||||||||||||    
T  51975097 atcacaaattcaacaaccactttgaccaccactg 51975064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9948772 - 9948741
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  9948772 atcacaaattcaacaaccactttgaccaccac 9948741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 51974615 - 51974646
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccac 32  Q
    ||||||||||||||||||||||||||||||||    
T  51974615 atcacaaattcaacaaccactttgaccaccac 51974646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 38930490 - 38930520
Alignment:
Q  1 atcacaaattcaacaaccactttgaccacca 31  Q
    |||||||||||||||||||||||||||||||    
T  38930490 atcacaaattcaacaaccactttgaccacca 38930520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6076738 - 6076705
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  6076738 atcacaaattcaacaaccactttgatcaccactg 6076705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 48971883 - 48971916
Alignment:
Q  1 atcacaaattcaacaaccactttgaccaccactg 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  48971883 atcacaaattcaacaaccactttaaccaccactg 48971916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29 - 1
Alignment:
Q  1 atcacaaattcaacaaccactttgaccac 29  Q
    |||||||||||||||||||||||||||||    
T  29 atcacaaattcaacaaccactttgaccac 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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