View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_55 (Length: 337)
Name: NF18315_low_55
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 30934959 - 30935253
Alignment:
| Q |
19 |
ccaagctacaacaattggctaaatatttcaaacatacacatgattccaatcaaatacttcaacattttcaactcattatccaaagattcaatctaaaggg |
118 |
Q |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||| || ||||||||||| | || || |
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| T |
30934959 |
ccaagctacaacaattggttaaagatttcaaacatacacatgattccaatcaaatacttccacattttcaattcattctcaaaagattcaatgtgaacgg |
30935058 |
T |
|
| Q |
119 |
gattagaaacccacgtacactgtcatgtcattattcaacatcacacatcaccatagataacgtttgaagttaacggatagatgaaactgaataacgcaaa |
218 |
Q |
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|||| |||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30935059 |
gatttgaaacccacgtacactgtcatgtcatcgtttaacatcgcacatcaccataaataacgtttgaagttaacggatagatgaaaccaaataacgcaaa |
30935158 |
T |
|
| Q |
219 |
ataaacccaacgtctattgtgatctttcaaaaaattcaaagactaaatagaacgatagttacaaattcagagattatctcgtctgttcattcatt |
313 |
Q |
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|||||||||| ||||| ||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||| |||||||||| |
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| T |
30935159 |
ataaacccaaagtctactgtgatcttacgaaaaattcaaagactaaattgaacgatatttacaaattcagagactatcttgtctattcattcatt |
30935253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 30993896 - 30994081
Alignment:
| Q |
20 |
caagctacaacaattggctaaatatttcaaacatacacatgattccaatcaaatacttcaacattttcaactcatta-tccaaagattcaatctaaaggg |
118 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| | ||| || || ||||||||||| |||||| |
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| T |
30993896 |
caagctacaacaattggctaatgatttcaaacatacacatgattccaatcaaatacctcaacattttcta-tcaatactctaaagattcaatataaaggt |
30993994 |
T |
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| Q |
119 |
gattagaaacccacgtacactgtcatgtcattattcaacatcacacatcaccatagataacgtttgaagttaacggatagatgaaact |
206 |
Q |
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| T |
30993995 |
gatttaaaacccacgtcgactgccatatgattatt-aacatttcacgtcatcatagataacgtttgaagttaacggagagatgaaact |
30994081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 25048610 - 25048662
Alignment:
| Q |
37 |
ctaaatatttcaaacatacacatgattccaatcaaatacttcaacattttcaa |
89 |
Q |
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||||| ||||||||||||||||| ||| |||| |||||||||||||||||||| |
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| T |
25048610 |
ctaaaaatttcaaacatacacataatttcaatgaaatacttcaacattttcaa |
25048662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 69 - 206
Target Start/End: Original strand, 30965201 - 30965336
Alignment:
| Q |
69 |
caaatacttcaacattttcaactcattatccaaagattcaatctaaaggggattagaaacccacgtacactgtcatgtcattattcaacatcacacatca |
168 |
Q |
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||||||| ||||||||||| | |||| || |||| |||||| |||||| |||| |||||||||| ||| |||||| | |||| ||||| ||| ||| |
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| T |
30965201 |
caaatacctcaacattttctattcatc-tctaaaggttcaatgtaaaggtgatttaaaacccacgtcgactatcatgtgaatatt-aacattgcacgtca |
30965298 |
T |
|
| Q |
169 |
ccatagataacgtttgaagttaacggatagatgaaact |
206 |
Q |
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||||||||||| ||||||||| |||| |||||||||| |
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| T |
30965299 |
tcatagataacgcttgaagttatcggagagatgaaact |
30965336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 33927021 - 33927081
Alignment:
| Q |
21 |
aagctacaacaattggctaaatatttcaaac-atacacatgattccaatcaaatacttcaa |
80 |
Q |
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|||| |||||||||||||||| || | | || |||||||||||||||||||||||||||| |
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| T |
33927021 |
aagccacaacaattggctaaagatctaatacgttacacatgattccaatcaaatacttcaa |
33927081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 41147661 - 41147738
Alignment:
| Q |
19 |
ccaagctacaacaattggctaaatatttcaaacatacacatgattccaatcaaatacttcaacattttcaactcatta |
96 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |
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| T |
41147661 |
ccaagctacaacaattggtaaaagatttcaaacatacacataattccaatcaaacacttcaacattttcaattcatta |
41147738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 33485888 - 33485851
Alignment:
| Q |
37 |
ctaaatatttcaaacatacacatgattccaatcaaata |
74 |
Q |
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| T |
33485888 |
ctaaagatttcaaacatacacataattccaatcaaata |
33485851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 40006974 - 40006930
Alignment:
| Q |
65 |
caatcaaatacttcaacattttcaactcattatccaaagattcaa |
109 |
Q |
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| T |
40006974 |
caatcaaatacctcaacattttcaattcattatctaaaaattcaa |
40006930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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