View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_57 (Length: 335)
Name: NF18315_low_57
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 12 - 309
Target Start/End: Original strand, 7821665 - 7821947
Alignment:
| Q |
12 |
caaaggtggaaaatgacatttggaaacaatgccagaacaggggtccgcatcagtacctaaggatagttggttacagttcaaaattgccaattccgcaata |
111 |
Q |
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| T |
7821665 |
caaaggtggaaaatgtcatttggaaacaatgccagaacaggggtccgcat--------------------ttacagttcaaaattgccaattctgcaata |
7821744 |
T |
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| Q |
112 |
ttagcacataaaaacacttccaaggtttttaaggtattgaatgtaaca-----gagaaaagatggacatctatctaaatattatttgggtcctaatgcaa |
206 |
Q |
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| T |
7821745 |
ttagcacacaaaaacacttccaaggtattgaatgtaacaaagatgacaagtcagagaaaagatggacatctatgtaaatattatttgggtcctaatgcaa |
7821844 |
T |
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| Q |
207 |
ctacaaatcgccaagattgaagccactggtgtcttcctggtgtacctgatacaaggaatgagctactttatgcattgtttctcaaatatgaaacttctta |
306 |
Q |
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| T |
7821845 |
cttcaaatcgccaagattgaagccactggtgtcttcctggtgtacctgatacatggaatgagctactttatgcattgtttctcaaatatgaaacttctta |
7821944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 158 - 304
Target Start/End: Original strand, 7812265 - 7812411
Alignment:
| Q |
158 |
cagagaaaagatggacatctatctaaatattatttgggtcctaatgcaactacaaatcgccaagattgaagccactggtgtcttcctggtgtacctgata |
257 |
Q |
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| T |
7812265 |
cagagaaaagatggacattcatctaaatattatttgggccctaatgaaaatccacatcgtcaagattgtagccattggtgtcttcccggtgtacctgata |
7812364 |
T |
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| Q |
258 |
caaggaatgagctactttatgcattgtttctcaaatatgaaacttct |
304 |
Q |
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| T |
7812365 |
catggaatgagctactttatgcattgtttctcaaatatgaaacttct |
7812411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 7812100 - 7812218
Alignment:
| Q |
13 |
aaaggtggaaaatgacatttggaaacaatgccagaacaggggtccgcatcagtacctaaggatagttggttacagttcaaaattgccaattccgcaatat |
112 |
Q |
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|||| |||||| || |||||||||||| | ||||| | |||||| || |||||||| |||| |||| ||||||||||||||||||||| ||||||| |
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| T |
7812100 |
aaagatggaaactgtcatttggaaacactaccagagcttgggtcctcaatggtacctaaagataactggtcacagttcaaaattgccaattctgcaatat |
7812199 |
T |
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| Q |
113 |
tagcacataaaaacacttc |
131 |
Q |
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| T |
7812200 |
taaaacacacaaacacttc |
7812218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 52614647 - 52614699
Alignment:
| Q |
227 |
agccactggtgtcttcctggtgtacctgatacaaggaatgagctactttatgc |
279 |
Q |
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| T |
52614647 |
agccattggtgtcttcctggggtccctgatgcatggaatgagctaatttatgc |
52614699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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