View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_67 (Length: 297)
Name: NF18315_low_67
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_67 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 12152861 - 12153004
Alignment:
| Q |
18 |
aaagatcatacccaaagtaataactaacctcgtggattagaaagtctcatggattacaaagtaacacaagttcaacctacaaaacaaaacccaaaacatt |
117 |
Q |
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| T |
12152861 |
aaagatcatacctaaagtaataactaacctcgtggattagaaagtctcatggattacaaagtaacacaatttcaacctacaaaacaaaacccaaaacatt |
12152960 |
T |
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| Q |
118 |
tggcgtacattagaattattcttagtgaaaggtggagaatgtga |
161 |
Q |
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| T |
12152961 |
tggcatacattagaattattcttagtgaaaggtggagaatgtga |
12153004 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 213 - 283
Target Start/End: Original strand, 12153056 - 12153126
Alignment:
| Q |
213 |
taaagatcatgaagatactttatagccaaactcgctggtcattttaatgtaacattcccatgacacctttg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
12153056 |
taaagatcatgaagatactttatagccaaactcgctggtcattttcatgtaacattcccatgacaactttg |
12153126 |
T |
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