View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_low_69 (Length: 289)
Name: NF18315_low_69
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_69 |
 | |
|
| [»] scaffold0197 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 34579157 - 34578885
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34579157 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
34579058 |
T |
|
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34579057 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
34578958 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
273 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34578957 |
tcatgctaagaggatcaccgttatggtgaaggatattcaacttgctcgtcgtatccgtggtgaacgagcttag |
34578885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 34584906 - 34584634
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584906 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgattcgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
34584807 |
T |
|
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584806 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
34584707 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
273 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34584706 |
tcatgctaagaggatcaccgttatggtgaaggatattcaacttgctcgtcgtatccgtggtgaacgagcttag |
34584634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 34571689 - 34571417
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34571689 |
gttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcaggatttca |
34571590 |
T |
|
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
|||| ||||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34571589 |
agacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaat |
34571490 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
273 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34571489 |
tcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgtgcttag |
34571417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 34562898 - 34562629
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcaga---att |
97 |
Q |
| |
|
||||||||||| ||||||||||| || |||||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34562898 |
gttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcatgttgatc |
34562799 |
T |
|
| Q |
98 |
tcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgc |
197 |
Q |
| |
|
||||| | ||||| ||||||||||| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34562798 |
tcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgc |
34562699 |
T |
|
| Q |
198 |
aattcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgt |
267 |
Q |
| |
|
|||||||||||||||| | ||| ||||| ||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
34562698 |
aattcatgctaagagggttaccattatgcctaaggatattcaacttgcttgccgtatccgtggtgaacgt |
34562629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 245
Target Start/End: Original strand, 13576386 - 13576477
Alignment:
| Q |
154 |
gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
245 |
Q |
| |
|
||||||||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
13576386 |
gaagcttatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattcaacttgc |
13576477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 25865585 - 25865857
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25865585 |
gttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgtaagcttccattccagcgtcttgttcgtgaaattgctcaggatttca |
25865684 |
T |
|
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
| || ||| ||||||| ||||| ||||| ||||| |||||||||||||| | || |||||| | || || |||||||||||||| |||||||||||||| |
|
|
| T |
25865685 |
aaacggatctgagatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaat |
25865784 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
273 |
Q |
| |
|
||||||||||||| | || ||||| ||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
25865785 |
tcatgctaagagggtaacgattatgccaaaggatattcagcttgctcgtcgtattcgtggtgaacgtgcttag |
25865857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 41943829 - 41944101
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
100 |
Q |
| |
|
||||| ||||||||||| ||||| || |||||| |||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
41943829 |
gttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaagcttccattccaacgtcttgttcgtgaaattgctcaagatttca |
41943928 |
T |
|
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
|||| ||| | ||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41943929 |
agacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgtttgaggataccaatttgtgtgcaat |
41944028 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
273 |
Q |
| |
|
||||||||||||| | || ||||| ||||| ||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
41944029 |
tcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgtattcgtggtgaacgtgcttag |
41944101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 38799392 - 38799591
Alignment:
| Q |
13 |
gagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttga |
112 |
Q |
| |
|
||||| ||||||||||||||| | || || ||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
38799392 |
gagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctga |
38799491 |
T |
|
| Q |
113 |
gattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagag |
212 |
Q |
| |
|
||||||||||| |||||| ||| ||||| ||||| | |||||||| ||||||||| | ||||| || || || | |||||||||||||||||||| |
|
|
| T |
38799492 |
gattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagag |
38799591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 38822125 - 38821926
Alignment:
| Q |
13 |
gagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttga |
112 |
Q |
| |
|
||||| ||||||||||||||| | || || ||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
38822125 |
gagatccgtaagtatcagaagagcactgagcttctcatccgtaaacttccattccaacgtcttgttcgtgaaattgctcaagatttcaagacagatctga |
38822026 |
T |
|
| Q |
113 |
gattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagag |
212 |
Q |
| |
|
||||||||||| |||||| ||| ||||| ||||| | |||||||| ||||||||| | ||||| || || || | |||||||||||||||||||| |
|
|
| T |
38822025 |
gattccagagcagcgcagtttccgctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagag |
38821926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 26592062 - 26592156
Alignment:
| Q |
10 |
cgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagac |
104 |
Q |
| |
|
|||||||| || ||||| |||||| | ||||||||| | || || |||||||| |||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
26592062 |
cgtgagatccgcaagtaccagaagagcaccgaacttctcattcgcaaacttcctttccagcgtcttgttcgtgagattgctcaggatttcaagac |
26592156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 213
Target Start/End: Original strand, 44343977 - 44344052
Alignment:
| Q |
138 |
acttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagg |
213 |
Q |
| |
|
|||||||||||||| || |||||| | || || |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44343977 |
acttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagg |
44344052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 43479917 - 43479673
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
100 |
Q |
| |
|
||||||||||||||||| || |||||||||||| ||||||| ||| | ||| | || ||||||||||| | | ||| | ||||| |||||| |||||| |
|
|
| T |
43479917 |
gttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattccaaagattggttagggaaatcgctcaggatttca |
43479818 |
T |
|
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
| || ||| | || |||||||| || ||| || ||||| ||||| | ||||||||| | |||||||||||||| ||||| || | || || || |
|
|
| T |
43479817 |
aaactgatctcaggttccagagtagcgctgtttctgctcttcaagaagccgctgaagcttatcttgttggtttgtttgaagatactaacctttgcgctat |
43479718 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
245 |
Q |
| |
|
||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
43479717 |
tcatgctaagagggttacaattatgcctaaggatattcaacttgc |
43479673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 44343886 - 44343956
Alignment:
| Q |
1 |
gttgctcttcgtgagatac--gtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccag |
69 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| ||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
44343886 |
gttgctcttcgtgagagatctgtaagtatcagaagagtaccaaacttttgatccgtaagcttcccttccag |
44343956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 101 - 273
Target Start/End: Complemental strand, 7594274 - 7594102
Alignment:
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| |||||||||||||||| || ||||| ||||||| ||||||||||| |||||| |||||||||| |
|
|
| T |
7594274 |
agacggatctgagattccagagccatgcagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaat |
7594175 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcgtcgtatccgtggtgaacgtgcttag |
273 |
Q |
| |
|
||||||||||||| | || ||||| ||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
7594174 |
tcatgctaagagggtgacaattatgccaaaggatattcagcttgctcgtcgcattcgtggtgaacgtgcttag |
7594102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 7594492 - 7594401
Alignment:
| Q |
11 |
gtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaag |
102 |
Q |
| |
|
||||||| |||||||| |||||| |||| || ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||| |
|
|
| T |
7594492 |
gtgagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatttcagcgtcttgtccgtgaaattgctcaagatttcaag |
7594401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 18492719 - 18492794
Alignment:
| Q |
28 |
cagaagggtacc-gaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaag |
102 |
Q |
| |
|
|||||| ||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |
|
|
| T |
18492719 |
cagaagagtacctgaattttttatccgtaaacttccattccagtgtcttgttcgtgaaatttctcaagatttcaag |
18492794 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 18471108 - 18471173
Alignment:
| Q |
28 |
cagaagggtacc-gaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctca |
92 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||| ||||||||| || |||||||| |||||||| |||| |
|
|
| T |
18471108 |
cagaagagtacctgaacttttgatccataagcttccattcgagtgtcttgtttgtgaaatttctca |
18471173 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 245
Target Start/End: Original strand, 21317513 - 21317703
Alignment:
| Q |
55 |
aaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtgg |
154 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||| ||||||| || ||| | |||||||||||| ||| ||| || ||||| ||||| | | |
|
|
| T |
21317513 |
aaacttccattccaacgtcttgttcgtgaaatcgctcaggatttcaaaaccgatctcagattccagagcagtgctgtttctgctcttcaagaagcggctg |
21317612 |
T |
|
| Q |
155 |
aagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
245 |
Q |
| |
|
|||||||| | |||||||||||||| ||||| ||| | || || |||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
21317613 |
aagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
21317703 |
T |
|
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 12547242 - 12546995
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
100 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||| | ||||| ||| | || | || |||||||||||| | |||||||||||||| ||||| |||||| |
|
|
| T |
12547242 |
gttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaagatttca |
12547143 |
T |
|
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||| ||||| ||| | ||||| || |
|
|
| T |
12547142 |
aaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccat |
12547043 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcg |
248 |
Q |
| |
|
||||||||||||| | || | ||| ||||||||||||||||||||| |
|
|
| T |
12547042 |
tcatgctaagagggttactatcatgcctaaggatattcaacttgctcg |
12546995 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 12531377 - 12531624
Alignment:
| Q |
1 |
gttgctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttca |
100 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||| | ||||| ||| | || | || |||||||||||| | |||||||||||||| ||||| |||||| |
|
|
| T |
12531377 |
gttgcacttcgtgagatccgcaagtaccagaagagcaccgagcttcttataaggaagcttccattccagaggcttgttcgtgaaatcgctcaagatttca |
12531476 |
T |
|
| Q |
101 |
agacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaat |
200 |
Q |
| |
|
| |||||| | ||||||| ||| ||| ||| || ||||| ||||| | ||||||||| | |||||||||||||| ||||| ||| | ||||| || |
|
|
| T |
12531477 |
aaacagatctccgattccaaagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccat |
12531576 |
T |
|
| Q |
201 |
tcatgctaagaggatcaccgttatggttaaggatattcaacttgctcg |
248 |
Q |
| |
|
||||||||||||| | || | ||| ||||||||||||||| ||||| |
|
|
| T |
12531577 |
tcatgctaagagggttactatcatgcctaaggatattcaactcgctcg |
12531624 |
T |
|
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Target: scaffold0197 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 30957 - 31140
Alignment:
| Q |
62 |
cattccagcgtcttgttcgtgaaattgctcagaatttcaagacagatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagctta |
161 |
Q |
| |
|
||||||| ||||||||||||||||| |||||| ||||||| || || | |||||||||||| ||| ||| || ||||| ||||| | |||||||| |
|
|
| T |
30957 |
cattccaacgtcttgttcgtgaaatcgctcaggatttcaaaacctatctcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagctta |
31056 |
T |
|
| Q |
162 |
tttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagaggatcaccgttatggttaaggatattcaacttgc |
245 |
Q |
| |
|
| | |||||||||||||| ||||| ||| | || || |||||||||||||| | || ||||| |||||||||||||||||| |
|
|
| T |
31057 |
tcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggatattcaacttgc |
31140 |
T |
|
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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 34748643 - 34748743
Alignment:
| Q |
4 |
gctcttcgtgagatacgtaagtatcagaagggtaccgaacttttgatccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaaga |
103 |
Q |
| |
|
||||| |||||||| |||||||| |||||| | |||||||| | ||||| ||||| || ||||||||||| |||||||| || |||||| ||||||||| |
|
|
| T |
34748643 |
gctctacgtgagatccgtaagtaccagaagagcaccgaactcctcatccgcaaactccccttccagcgtctggttcgtgagatcgctcaggatttcaaga |
34748742 |
T |
|
| Q |
104 |
c |
104 |
Q |
| |
|
| |
|
|
| T |
34748743 |
c |
34748743 |
T |
|
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 44771153 - 44771112
Alignment:
| Q |
60 |
tccattccagcgtcttgttcgtgaaattgctcagaatttcaa |
101 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
44771153 |
tccattccaacgtcttgttcgtgaaatcgctcaggatttcaa |
44771112 |
T |
|
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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 24860479 - 24860531
Alignment:
| Q |
49 |
atccgtaaacttccattccagcgtcttgttcgtgaaattgctcagaatttcaa |
101 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
24860479 |
atccgaaaacttccattccaacgtctcgttcgtgaaatcgctcaagatttcaa |
24860531 |
T |
|
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