View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_7 (Length: 685)

Name: NF18315_low_7
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_7
NF18315_low_7
[»] chr7 (3 HSPs)
chr7 (14-250)||(43208559-43208798)
chr7 (462-670)||(43208097-43208308)
chr7 (247-379)||(43208391-43208523)
[»] chr1 (7 HSPs)
chr1 (48-144)||(45136775-45136871)
chr1 (48-142)||(38839716-38839810)
chr1 (38-137)||(33099679-33099778)
chr1 (11-63)||(68100-68152)
chr1 (49-140)||(3231883-3231975)
chr1 (23-63)||(24873768-24873808)
chr1 (23-63)||(24874601-24874641)
[»] chr2 (5 HSPs)
chr2 (12-142)||(16863382-16863510)
chr2 (12-141)||(34176569-34176697)
chr2 (23-142)||(13712951-13713071)
chr2 (41-116)||(2248986-2249061)
chr2 (11-138)||(16576177-16576303)
[»] chr8 (3 HSPs)
chr8 (12-80)||(7590336-7590404)
chr8 (15-116)||(34695778-34695880)
chr8 (41-119)||(39280900-39280978)
[»] chr5 (2 HSPs)
chr5 (23-67)||(14138544-14138588)
chr5 (21-62)||(17736929-17736970)
[»] chr4 (2 HSPs)
chr4 (11-63)||(15131595-15131647)
chr4 (98-138)||(49014285-49014325)
[»] chr3 (3 HSPs)
chr3 (23-137)||(7641777-7641891)
chr3 (41-79)||(20519519-20519557)
chr3 (38-142)||(46303295-46303398)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 43208798 - 43208559
Alignment:
Q  14 atgaaggaatttgatattcttaaaataaaaatggtaactgattgtaagaataaagataaagaaaaataattttttattggatagggataaattatcctca 113  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||    
T  43208798 atgaaggaatttgatattcttaaaataaaaatggtaattgattgtaagaataaagatgaagaaaaataactttttattcgatagggataaattaccctca 43208699  T
Q  114 atttatcaagggataatgtagaaaaaaccgtcatgtaaaatcatttatttgaacaagatatttagcaaacttatctaaccatttgcc---attctcatct 210  Q
    ||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||   ||||||||||    
T  43208698 attcatcaagggataatgtagaaaaaaccatcatgtataatcatttattcgaacaagatatttagcaaacttatctaaccatttgccattattctcatct 43208599  T
Q  211 ctaattacaccaccacaacccatcataccacctctttgcc 250  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  43208598 ctaattacaccaccacatcccatcataccacctctttgcc 43208559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 462 - 670
Target Start/End: Complemental strand, 43208308 - 43208097
Alignment:
Q  462 catgacgaataataattgtaagaaggataataaaatatgaaacctactaaaacagaaacaattgttatacttaaacacccgacctttttatacatatacg 561  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  43208308 catgacgaataataattgtaagaaggataataaaatatgaaacctactaaaacagaaacaattgttatacttaaacacccgacctttttatacacatatg 43208209  T
Q  562 caacactttacattctctctatttctctg---ttatcacatcatcaatatattacatctatcacattcttctatctattactttctccctctagagatca 658  Q
    |||||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43208208 caacactttacattctctctatttctctgctattatcacattatcaatatattacatctatcacattcttctatctattactttctccctctagagatca 43208109  T
Q  659 attggatatttc 670  Q
    || |||||||||    
T  43208108 atcggatatttc 43208097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 247 - 379
Target Start/End: Complemental strand, 43208523 - 43208391
Alignment:
Q  247 tgcctgaaggttgagattcccaactaacataaaaaacctcttttatcagaaggtgaagcttctctactaaccctaaacaatctattagtttctaatttta 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  43208523 tgcctgaaggttgagattcccaactaacataaaaaacctcttttatcagaaggtgaagcttctcaactaaccctaaacaatctattaatttctaatttta 43208424  T
Q  347 tccgctatcaactaacctatctaatgtccacaa 379  Q
    || ||||||||||||||||||||||||||||||    
T  43208423 tcagctatcaactaacctatctaatgtccacaa 43208391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 45136775 - 45136871
Alignment:
Q  48 taactgattgtaagaataaagataaagaaaaataattttttattggatagggataaattatcctcaatttatcaagggataatgtagaaaaaaccgt 144  Q
    ||||||||||||||||||||||| |||||||  |  ||||| || ||||||| |||||| ||||||||| ||| ||||||| |||| ||||||||||    
T  45136775 taactgattgtaagaataaagatgaagaaaatgagatttttctttgataggggtaaattttcctcaattcatcgagggatagtgtaaaaaaaaccgt 45136871  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 38839716 - 38839810
Alignment:
Q  48 taactgattgtaagaataaagataaagaaaaataattttttattggatagggataaattatcctcaatttatcaagggataatgtagaaaaaacc 142  Q
    ||||| ||||||||||||||||| || |||| ||  ||||| || |||||  ||||||||||| ||||| | ||| |||||||||| ||||||||    
T  38839716 taactaattgtaagaataaagatgaaaaaaattagatttttctttgatagaaataaattatccccaattaaacaaaggataatgtataaaaaacc 38839810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 33099679 - 33099778
Alignment:
Q  38 ataaaaatggtaactgattgtaagaataaagataaagaaaaata-attttttattggatagggataaattatcctcaatttatcaagggataatgtagaa 136  Q
    |||||||||  |||||||||||||||||  || ||| |||||||  |||||| || |||| || ||||||| || ||||||||||||| |||||||||||    
T  33099679 ataaaaatgacaactgattgtaagaatattgacaaaaaaaaatattttttttctttgatatgggtaaatta-ccccaatttatcaaggaataatgtagaa 33099777  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 68152 - 68100
Alignment:
Q  11 gagatgaaggaatttgatattcttaaaataaaaatggtaactgattgtaagaa 63  Q
    ||||||||| | || ||| ||||| ||||||||||||||||| ||||||||||    
T  68152 gagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaagaa 68100  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 3231975 - 3231883
Alignment:
Q  49 aactgattgtaagaataaagataaagaaaaataattttttattggatagggataaattatcctcaatttatcaag-ggataatgtagaaaaaa 140  Q
    ||||||||||||  ||||| || ||||||||| | ||||| ||  ||| |||||||||| | |||| |||| ||| |||||||||||||||||    
T  3231975 aactgattgtaaagataaacatgaagaaaaatgagtttttcttttatatggataaattaccttcaacttataaagtggataatgtagaaaaaa 3231883  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 24873808 - 24873768
Alignment:
Q  23 tttgatattcttaaaataaaaatggtaactgattgtaagaa 63  Q
    |||||| |||||||||| |||||||||| ||||||||||||    
T  24873808 tttgatcttcttaaaatgaaaatggtaattgattgtaagaa 24873768  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 24874641 - 24874601
Alignment:
Q  23 tttgatattcttaaaataaaaatggtaactgattgtaagaa 63  Q
    |||||| |||||||||| |||||||||| ||||||||||||    
T  24874641 tttgatcttcttaaaatgaaaatggtaattgattgtaagaa 24874601  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 16863510 - 16863382
Alignment:
Q  12 agatgaaggaatttgatattcttaaaataaaaatggtaactgattgtaagaataaagataaagaaaaataattttttattggatagggataaattatcct 111  Q
    |||||||| |||||||| ||||| | || |||||||||||||||||||||||||||||  ||||||||  | ||||| || |||| |||||||||| ||     
T  16863510 agatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaataaaga-gaagaaaaaggaatttttctttgatatggataaatta-ccc 16863413  T
Q  112 caatttatcaagggataatgtagaaaaaacc 142  Q
    ||||| ||   ||| ||||||||||||||||    
T  16863412 caattcatggtggggtaatgtagaaaaaacc 16863382  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 34176697 - 34176569
Alignment:
Q  12 agatgaaggaatttgatattcttaaaataaaaatggtaactgattgtaagaataaagataaagaaaa-ataattttttattggatagggataaattatcc 110  Q
    |||||||| | |||||||||||||| || |||||||||||||||||||  ||||||||| ||||||| |||| || || |   |||||| || |||| ||    
T  34176697 agatgaagaagtttgatattcttaagatgaaaatggtaactgattgtagaaataaagatgaagaaaatataa-ttgttctctaataggg-tatattaccc 34176600  T
Q  111 tcaatttatcaagggataatgtagaaaaaac 141  Q
    ||||||  |||||||||||||||||||||||    
T  34176599 tcaattattcaagggataatgtagaaaaaac 34176569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 13712951 - 13713071
Alignment:
Q  23 tttgatattcttaaaataaaaatggtaactgattgtaagaataaagataaagaaaaata-at--tttttattggatagggataaattatcctcaatttat 119  Q
    ||||| ||| |||| |||||||||||||| ||||||| ||||||| ||||| ||||||| ||  ||||| || ||||||| |||||||||||||||| ||    
T  13712951 tttgaaatttttaagataaaaatggtaaccgattgtaggaataaatataaa-aaaaatatatgatttttctttgataggg-taaattatcctcaattcat 13713048  T
Q  120 caagggataatgtagaaaaaacc 142  Q
    || ||  ||  ||||||||||||    
T  13713049 catggagtagcgtagaaaaaacc 13713071  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 2248986 - 2249061
Alignment:
Q  41 aaaatggtaactgattgtaagaataaagataaagaaaa-ataattttttattggatagggataaattatcctcaatt 116  Q
    |||||||||||| ||| ||||||||||||| ||||||| || | ||||| || ||||| | ||||||||||||||||    
T  2248986 aaaatggtaactaattctaagaataaagatgaagaaaatatga-tttttctttgatagaggtaaattatcctcaatt 2249061  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 16576303 - 16576177
Alignment:
Q  11 gagatgaaggaatttgatattcttaaaataaaaatggtaactgattgtaagaataaagataaagaaaa-ataattttttattggatagggataaattatc 109  Q
    ||||||||| | |||||| ||||| | |  |||||||||| |||||||||||| |||| | ||||||| |||| ||||| || ||||||| ||||||| |    
T  16576303 gagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaagataa-tttttctttgatagggctaaatta-c 16576206  T
Q  110 ctcaatttatcaagggataatgtagaaaa 138  Q
      ||||| ||| | |||||||||||||||    
T  16576205 gccaattgatctaaggataatgtagaaaa 16576177  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 7590336 - 7590404
Alignment:
Q  12 agatgaaggaatttgatattcttaaaataaaaatggtaactgattgtaagaataaagataaagaaaaat 80  Q
    |||||||| |||||||| ||||| |||| ||| ||||||| |||||||||||||||||  |||||||||    
T  7590336 agatgaagaaatttgatgttcttgaaatgaaattggtaaccgattgtaagaataaagacgaagaaaaat 7590404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 34695880 - 34695778
Alignment:
Q  15 tgaaggaatttgatattcttaaaataaaaatggtaactgattgtaagaataaagataaagaaaaataattttttattggatag-ggataaattatcctca 113  Q
    ||||| ||||||||| | || |||  |||||| ||||||||||||||||||||||| |||||||   | ||||| || || || ||||||||||||||||    
T  34695880 tgaagaaatttgataattttgaaaagaaaatgataactgattgtaagaataaagatgaagaaaagagaatttttctttgacagaggataaattatcctca 34695781  T
Q  114 att 116  Q
    |||    
T  34695780 att 34695778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 39280978 - 39280900
Alignment:
Q  41 aaaatggtaactgattgtaagaataaagataaagaaaaataattttttattggatagggataaattatcctcaatttat 119  Q
    |||||||||||||||| ||||||||||||| |||||||     ||||| || ||||||| |||||||||| ||||||||    
T  39280978 aaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgataggggtaaattatccccaatttat 39280900  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 14138588 - 14138544
Alignment:
Q  23 tttgatattcttaaaataaaaatggtaactgattgtaagaataaa 67  Q
    |||||||||||||| || |||||||||| ||||||||||||||||    
T  14138588 tttgatattcttaagatgaaaatggtaattgattgtaagaataaa 14138544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 17736929 - 17736970
Alignment:
Q  21 aatttgatattcttaaaataaaaatggtaactgattgtaaga 62  Q
    |||||||||||||||| |||||||||||||  ||||||||||    
T  17736929 aatttgatattcttaagataaaaatggtaatcgattgtaaga 17736970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 15131595 - 15131647
Alignment:
Q  11 gagatgaaggaatttgatattcttaaaataaaaatggtaactgattgtaagaa 63  Q
    ||||||||| |||||||| ||||| | |||||||||||||||||| |||||||    
T  15131595 gagatgaagaaatttgatgttcttgagataaaaatggtaactgatagtaagaa 15131647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 49014325 - 49014285
Alignment:
Q  98 ggataaattatcctcaatttatcaagggataatgtagaaaa 138  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  49014325 ggataaattatcctcaattcatcaaggggtaatgtagaaaa 49014285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 7641891 - 7641777
Alignment:
Q  23 tttgatattcttaaaataaaaatggtaactgattgtaagaataaagataaagaaaaataattttttattggatagggataaattatcctcaatttatcaa 122  Q
    |||||| ||||| | ||||||||| ||||||||| ||||||||||| | |||||||  ||  |||| || ||||||| ||||||| |||| |||  | ||    
T  7641891 tttgatgttcttgatataaaaatgataactgattttaagaataaagttgaagaaaatgaaaattttctttgataggggtaaattaccctctattctttaa 7641792  T
Q  123 gggataatgtagaaa 137  Q
    ||| |||| ||||||    
T  7641791 ggggtaatctagaaa 7641777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 20519519 - 20519557
Alignment:
Q  41 aaaatggtaactgattgtaagaataaagataaagaaaaa 79  Q
    ||||||||||||||||||||||| |||||| ||||||||    
T  20519519 aaaatggtaactgattgtaagaagaaagatgaagaaaaa 20519557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 46303398 - 46303295
Alignment:
Q  38 ataaaaatggtaactgattgtaagaataaagataaagaaaaataattttttattggatagggataaattatcctcaatttatcaagggataatgtagaaa 137  Q
    ||||||||| ||  |||||||||||| || ||| || |||||||  ||||| || ||||||  |||||||  | ||||| ||||||| ||||||||||||    
T  46303398 ataaaaatgatatttgattgtaagaa-aatgatgaaaaaaaatagatttttctttgataggagtaaattactcccaattcatcaaggaataatgtagaaa 46303300  T
Q  138 aaacc 142  Q
    |||||    
T  46303299 aaacc 46303295  T

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