View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_72 (Length: 280)
Name: NF18315_low_72
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 35383995 - 35383741
Alignment:
| Q |
13 |
atcatcatggtcattaaacttaaaggcctttgctaataccctagctgtgcaattacctagataacgatatcaaccaatgcttaacttgttcataacctta |
112 |
Q |
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| T |
35383995 |
atcatcatggtcattaaacttaaaggcctttgctaataccctagctgtgcaattacctagataacgatatcaaccaatgcttaacttgttcataacctta |
35383896 |
T |
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| Q |
113 |
ctcatactttggagggtataagagttataaacaacaaaaagctccctttaacttgtgacaaaactgcaattagtctccctcaagatcacacacatgc--- |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35383895 |
ctcatactttggagggtataagagttataaacaacaaaaagctccctttaacttgtgacaaaactgtaattagtctccctcaagatcacacacatgctaa |
35383796 |
T |
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| Q |
210 |
-taagagataatggagagaatgagaagagaggaaaagaaaagtaaaaaccatttg |
263 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35383795 |
ttaagagataatggagagaatgagaagagaagaaaagaaaagtaaaaaccatttg |
35383741 |
T |
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