View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_low_75 (Length: 274)
Name: NF18315_low_75
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_75 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 31628822 - 31629063
Alignment:
| Q |
17 |
cattcatcttcaaaaactattatggtgaaattcagacactctcgtcttggaccacgaaaaccgtctttaacagcatcacagacattgatcttcacattgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||| |
|
|
| T |
31628822 |
cattcatcttcaaaaactattatggtgaaattcagacactctcgtcttggaccacgaaaaccgtcgttaacagcgtctcagacattgatcttcacattgt |
31628921 |
T |
|
| Q |
117 |
ttgtgaccttcacattgctcattctcattctcttaactctccgtatcccgaaaatcaaccatatcaactccatttctcataatgctctcaggtttgattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31628922 |
ttgtgaccttcacattgctcattctcattctcttaactctccgtatcccgaaactcaaccatatcaactccatttctcataatgctctcaggtttgattt |
31629021 |
T |
|
| Q |
217 |
cagttcaactcaactttctttgtgttattctattctctcttt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31629022 |
cagttcaactcaactttctttgtgttattctattctctcttt |
31629063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 31650455 - 31650600
Alignment:
| Q |
17 |
cattcatcttcaaaaactattatggtgaaattcagacactctcgtcttggaccacgaaaaccgtctttaacagcatcacagacattgatcttcacattgt |
116 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| |||||| | | |||| ||||||||||| ||| | || ||||||| || ||||||||| |
|
|
| T |
31650455 |
cattcatcttcaaaaattgttatggtgaaattcaagcactctagcgtgggacttcgaaaaccgtcgctaataatatgttggacattgttcctcacattgt |
31650554 |
T |
|
| Q |
117 |
ttgtgaccttcacattgctcattctcattctcttaactctccgtat |
162 |
Q |
| |
|
||||||| |||||||| |||||||| ||| |||||||||| ||||| |
|
|
| T |
31650555 |
ttgtgactttcacattcctcattcttattatcttaactcttcgtat |
31650600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 31654018 - 31654086
Alignment:
| Q |
97 |
gacattgatcttcacattgtttgtgaccttcacattgctcattctcattctcttaactctccgtatccc |
165 |
Q |
| |
|
||||||| || |||||||||||||||| |||||||| |||||||| ||| |||||||||| |||||||| |
|
|
| T |
31654018 |
gacattgttcctcacattgtttgtgactttcacattcctcattcttattatcttaactcttcgtatccc |
31654086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University