View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_79 (Length: 237)

Name: NF18315_low_79
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_79
NF18315_low_79
[»] chr2 (9 HSPs)
chr2 (40-237)||(31280545-31280742)
chr2 (40-223)||(31373495-31373678)
chr2 (24-228)||(31384062-31384269)
chr2 (22-228)||(31253264-31253473)
chr2 (22-228)||(31290824-31291033)
chr2 (54-228)||(31358140-31358314)
chr2 (39-215)||(31317804-31317980)
chr2 (65-215)||(31421404-31421554)
chr2 (22-130)||(31304730-31304841)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 40 - 237
Target Start/End: Complemental strand, 31280742 - 31280545
Alignment:
Q  40 tatttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttacg 139  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||| ||||| |||||||||| |    
T  31280742 tattttcaaattcacttacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaagcaagaaacagtcaacgaaagaacttatg 31280643  T
Q  140 atgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggatattcattgatcatggtcaa 237  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||    
T  31280642 atgatgattcagattcatctggaccaactaaattccatcacagtccaacaggaaattgggcatttattaccactggtatattcattgatcatggtcaa 31280545  T

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Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 31373678 - 31373495
Alignment:
Q  40 tatttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttacg 139  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||  ||  ||||||||| || ||| |    
T  31373678 tatttccaaattcactcacatgatttgctcaacccagccgcatactccctttatataaattgtggtggaaagcaagaaactgtcaacaaaacaagttatg 31373579  T
Q  140 atgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggatattca 223  Q
    |||||||||| || |||||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  31373578 atgatgattccgagtcatctggaccagcaaaattccatctcagcccaacaggaaattgggcatttagcactactggtatattca 31373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 31384269 - 31384062
Alignment:
Q  24 attttcttagtttcctta---tttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgaca 120  Q
    ||||||||||||||||||   |||||||| |||||||||||||||  |||||||||| || ||||||||| |||||||||||||||||| |||||  | |    
T  31384269 attttcttagtttccttaatatttccaaagtcactcacatgatcttatcaacccagcgtcttactcccttcatataaattgtggtggaaagcaagaaaga 31384170  T
Q  121 atcaacaaaagaacttacgatgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggatat 220  Q
     ||||||||| || ||| ||||||||||| ||||| |||||| || ||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||    
T  31384169 gtcaacaaaacaagttatgatgatgattccgattcttctggagcagctaaattccatgtcagtccaacaggaacttgggcatttagcactactggtatat 31384070  T
Q  221 tcattgat 228  Q
    ||||||||    
T  31384069 tcattgat 31384062  T

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Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 31253473 - 31253264
Alignment:
Q  22 tgattttcttagtttcctta---tttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcga 118  Q
    ||||||||||||||||||||   |||  ||| |  |||||||| ||| |||||||||||||  |||||||||| ||||||||||||||||| |||||| |    
T  31253473 tgattttcttagtttccttaatatttttaaagttgctcacatgttcttctcaacccagccttgtactccctttttataaattgtggtggaaagcaagcaa 31253374  T
Q  119 caatcaacaaaagaacttacgatgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggat 218  Q
     | ||||||||| || ||| |||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| || ||||| ||    
T  31253373 tagtcaacaaaaaaagttatgatgatgattcagattcatctggagcagctaaattccatgtcagtccaacaggaaattgggcatttagtacaactggtat 31253274  T
Q  219 attcattgat 228  Q
    ||||||||||    
T  31253273 attcattgat 31253264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 31291033 - 31290824
Alignment:
Q  22 tgattttcttagtttcctta---tttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcga 118  Q
    ||||||||||||||||||||   |||||||| |  |||||||||||| |||||||||||||  |||||||||||||||||||||||||||| ||| || |    
T  31291033 tgattttcttagtttccttaatatttccaaagtttctcacatgatcttctcaacccagccttgtactccctttatataaattgtggtggaaagcatgcaa 31290934  T
Q  119 caatcaacaaaagaacttacgatgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggat 218  Q
     | |||| ||||||| ||| || |||||||| ||||| |||||| || ||||||||||| |||| |||||||||||||||||||||||| | || || ||    
T  31290933 tagtcaaaaaaagaagttatgacgatgattccgattcttctggagcagctaaattccatgtcagcccaacaggaaattgggcatttagctctaccggtat 31290834  T
Q  219 attcattgat 228  Q
    ||||||||||    
T  31290833 attcattgat 31290824  T

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Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 228
Target Start/End: Complemental strand, 31358314 - 31358140
Alignment:
Q  54 ctcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttacgatgatgattcagat 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | | ||||||||| || ||| |||||||||||||||    
T  31358314 ctcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaagtcgagcaaaagtcaacaaaacaagttatgatgatgattcagat 31358215  T
Q  154 tcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgggatattcattgat 228  Q
    ||  |||||||  ||| |||| ||| ||||||||| |||||||||||||| || |||||||| |||| |||||||    
T  31358214 tctcctggacctgctagattctatcgcagtccaactggaaattgggcattgagtaccactggtatatacattgat 31358140  T

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Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 215
Target Start/End: Complemental strand, 31317980 - 31317804
Alignment:
Q  39 ttatttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttac 138  Q
    ||||||||||| |  || |||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| || | |||||  || || |||     
T  31317980 ttatttccaaagttgctgacatgatctgcttaacccagcctcatacaccctttatataaattgtggtggaaagcaagtgatagtcaacggaaaaagttat 31317881  T
Q  139 gatgatgattcagattcatctggaccaactaaattccatctcagtccaacaggaaattgggcatttagcaccactgg 215  Q
     ||| ||||||||| |||||| ||||| ||  || | || |||||||||||| ||||||||||||||||| ||||||    
T  31317880 tatggtgattcagactcatctagaccagctcgatccgatgtcagtccaacagaaaattgggcatttagcagcactgg 31317804  T

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Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 215
Target Start/End: Original strand, 31421404 - 31421554
Alignment:
Q  65 tgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcgacaatcaacaaaagaacttacgatgatgattcagattcatctggacc 164  Q
    |||||||||||||| || |||| |||||||||||||||||||||| |||||| | | || ||  || || |||||||| ||||||||||| | |||||||    
T  31421404 tgctcaacccagccgcaaactctctttatataaattgtggtggaaagcaagcaatagtcgacggaaaaagttacgatggtgattcagatttacctggacc 31421503  T
Q  165 aactaaattccatctcagtccaacaggaaattgggcatttagcaccactgg 215  Q
      ||| |||||||  || |||||||||||||||||||| |||||| |||||    
T  31421504 cgctagattccatgccaatccaacaggaaattgggcatatagcacaactgg 31421554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 31304841 - 31304730
Alignment:
Q  22 tgattttcttagtttcctta---tttccaaattcactcacatgatctgctcaacccagcctcatactccctttatataaattgtggtggaaggcaagcga 118  Q
    |||||||||||||||| |||   || ||||| |  ||||||||||| |||||||||||||||| | || ||||||||||||||||||||||  ||||  |    
T  31304841 tgattttcttagtttcattagtattgccaaagtttctcacatgatccgctcaacccagcctcaaaatctctttatataaattgtggtggaaatcaagaaa 31304742  T
Q  119 caatcaacaaaa 130  Q
    || |||||||||    
T  31304741 cagtcaacaaaa 31304730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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