View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_84 (Length: 225)

Name: NF18315_low_84
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_84
NF18315_low_84
[»] chr3 (8 HSPs)
chr3 (12-216)||(23140385-23140589)
chr3 (109-216)||(23039380-23039487)
chr3 (123-216)||(23024611-23024704)
chr3 (123-216)||(23149097-23149190)
chr3 (112-216)||(23036509-23036613)
chr3 (129-216)||(23017401-23017488)
chr3 (110-213)||(23146262-23146365)
chr3 (109-216)||(23033038-23033145)
[»] chr6 (1 HSPs)
chr6 (129-216)||(21780152-21780239)
[»] scaffold0554 (1 HSPs)
scaffold0554 (132-216)||(6331-6415)
[»] chr1 (1 HSPs)
chr1 (124-211)||(12637342-12637429)
[»] scaffold0059 (1 HSPs)
scaffold0059 (129-165)||(62543-62579)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 23140589 - 23140385
Alignment:
Q  12 tttcggttctgttttcctcccttaagttaaaaatattacacaaattgattttttatgttggtcatttaactatgtctaaacatgtattatttacctggac 111  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  23140589 tttcggttctattttcctcccttaagttaaaaatactacacaaattgattttttatgtcggtcgtttaactatgtctaaacatgtattatttacctggac 23140490  T
Q  112 cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23140489 cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga 23140390  T
Q  212 ataat 216  Q
    |||||    
T  23140389 ataat 23140385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 23039487 - 23039380
Alignment:
Q  109 gaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatcca 208  Q
    ||||||| |||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23039487 gaccttattgatagctacttttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataagggatcca 23039388  T
Q  209 agaataat 216  Q
    ||||||||    
T  23039387 agaataat 23039380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 23024704 - 23024611
Alignment:
Q  123 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||    
T  23024704 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataat 23024611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 23149190 - 23149097
Alignment:
Q  123 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataat 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||    
T  23149190 ttattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataat 23149097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 112 - 216
Target Start/End: Complemental strand, 23036613 - 23036509
Alignment:
Q  112 cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga 211  Q
    |||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  23036613 cttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaaga 23036514  T
Q  212 ataat 216  Q
    |||||    
T  23036513 ataat 23036509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 23017488 - 23017401
Alignment:
Q  129 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataat 216  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  23017488 ttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataaggaatccaagaataat 23017401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 23146365 - 23146262
Alignment:
Q  110 accttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaa 209  Q
    |||||| |||||| || | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  23146365 accttattgatagctactttacaggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaa 23146266  T
Q  210 gaat 213  Q
    ||||    
T  23146265 gaat 23146262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 23033145 - 23033038
Alignment:
Q  109 gaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatcca 208  Q
    ||||||| |||||| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| |||| |    
T  23033145 gaccttattgatagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatgataagagatcaa 23033046  T
Q  209 agaataat 216  Q
     |||||||    
T  23033045 cgaataat 23033038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 21780239 - 21780152
Alignment:
Q  129 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataat 216  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21780239 ttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataat 21780152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 6331 - 6415
Alignment:
Q  132 aggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataat 216  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||    
T  6331 aggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataat 6415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 12637429 - 12637342
Alignment:
Q  124 tattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga 211  Q
    |||| ||||||||||  |||||||||||||||| |||||| | |  ||||||| ||||||||||| |||  |  ||||||||||||||    
T  12637429 tatttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaaga 12637342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 62579 - 62543
Alignment:
Q  129 ttcaggacatttttggtgctggaggtgagacatcagc 165  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  62579 ttcaggacatgtttggtgctggaggtgatacatcagc 62543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University