View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_86 (Length: 213)

Name: NF18315_low_86
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_86
NF18315_low_86
[»] chr5 (1 HSPs)
chr5 (82-141)||(10600362-10600419)
[»] chr4 (5 HSPs)
chr4 (83-141)||(33094354-33094412)
chr4 (82-130)||(53841481-53841529)
chr4 (182-213)||(53834196-53834227)
chr4 (182-213)||(54607971-54608002)
chr4 (82-126)||(33572066-33572110)
[»] chr2 (4 HSPs)
chr2 (84-130)||(38376393-38376439)
chr2 (82-136)||(42196749-42196803)
chr2 (182-213)||(14697679-14697710)
chr2 (184-213)||(13543755-13543784)
[»] chr7 (4 HSPs)
chr7 (82-130)||(33249508-33249556)
chr7 (182-213)||(33720178-33720209)
chr7 (62-91)||(16871509-16871538)
chr7 (184-213)||(39453606-39453635)
[»] chr3 (6 HSPs)
chr3 (182-213)||(7855256-7855287)
chr3 (182-213)||(53832626-53832657)
chr3 (182-213)||(54159130-54159161)
chr3 (184-213)||(39141257-39141286)
chr3 (85-130)||(52253760-52253805)
chr3 (84-128)||(43147771-43147815)
[»] chr1 (2 HSPs)
chr1 (82-126)||(5042171-5042215)
chr1 (82-130)||(52906896-52906944)


Alignment Details
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 10600362 - 10600419
Alignment:
Q  82 aagagaaagaagtgtgtttgatttttggaaagacaaaaatatccttataatatatgtgtg 141  Q
    ||||||||||  ||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  10600362 aagagaaaga--tgtgtttgatttttgaaaagacaaaaatatccttatactatatgtgtg 10600419  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 33094354 - 33094412
Alignment:
Q  83 agagaaagaagtgtgtttgatttttggaaagacaaaaatatccttataatatatgtgtg 141  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||| ||| ||||||    
T  33094354 agagaaagaagtgtgtttgatttttgaacagacaaaaatatcctcatactatgtgtgtg 33094412  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 53841529 - 53841481
Alignment:
Q  82 aagagaaagaagtgtgtttgatttttggaaagacaaaaatatccttata 130  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  53841529 aagagaaagaagtgtgtttaatttttgaaaagactaaaatatccttata 53841481  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 53834227 - 53834196
Alignment:
Q  182 agattacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||||    
T  53834227 agattacttttgaagaatggtgggtaatttac 53834196  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Original strand, 54607971 - 54608002
Alignment:
Q  182 agattacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||||    
T  54607971 agattacttttgaagaatggtgggtaatttac 54608002  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 33572066 - 33572110
Alignment:
Q  82 aagagaaagaagtgtgtttgatttttggaaagacaaaaatatcct 126  Q
    |||||| |||||||||||| ||||||| |||||| ||||||||||    
T  33572066 aagagagagaagtgtgtttaatttttgaaaagactaaaatatcct 33572110  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 38376439 - 38376393
Alignment:
Q  84 gagaaagaagtgtgtttgatttttggaaagacaaaaatatccttata 130  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||||    
T  38376439 gagaaagaagtgtgtttaatttttgaaaagaccaaaatatccttata 38376393  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 42196803 - 42196749
Alignment:
Q  82 aagagaaagaagtgtgtttgatttttggaaagacaaaaatatccttataatatat 136  Q
    ||||||||||||||||| ||||||||| || |||||||||||| ||||| |||||    
T  42196803 aagagaaagaagtgtgtctgatttttgaaatgacaaaaatatctttatactatat 42196749  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 14697710 - 14697679
Alignment:
Q  182 agattacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||||    
T  14697710 agattacttttgaagaatggtgggtaatttac 14697679  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 13543784 - 13543755
Alignment:
Q  184 attacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||    
T  13543784 attacttttgaagaatggtgggtaatttac 13543755  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 33249556 - 33249508
Alignment:
Q  82 aagagaaagaagtgtgtttgatttttggaaagacaaaaatatccttata 130  Q
    ||||||||||||||||||| ||||||| |||||| ||||||| ||||||    
T  33249556 aagagaaagaagtgtgtttaatttttgaaaagactaaaatattcttata 33249508  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 33720209 - 33720178
Alignment:
Q  182 agattacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||||    
T  33720209 agattacttttgaagaatggtgggtaatttac 33720178  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 91
Target Start/End: Complemental strand, 16871538 - 16871509
Alignment:
Q  62 tttgaggtgttgtttgttataagagaaaga 91  Q
    ||||||||||||||||||||||||||||||    
T  16871538 tttgaggtgttgtttgttataagagaaaga 16871509  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 39453635 - 39453606
Alignment:
Q  184 attacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||    
T  39453635 attacttttgaagaatggtgggtaatttac 39453606  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 7855287 - 7855256
Alignment:
Q  182 agattacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||||    
T  7855287 agattacttttgaagaatggtgggtaatttac 7855256  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 53832657 - 53832626
Alignment:
Q  182 agattacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||||    
T  53832657 agattacttttgaagaatggtgggtaatttac 53832626  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 213
Target Start/End: Complemental strand, 54159161 - 54159130
Alignment:
Q  182 agattacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||||    
T  54159161 agattacttttgaagaatggtgggtaatttac 54159130  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 184 - 213
Target Start/End: Complemental strand, 39141286 - 39141257
Alignment:
Q  184 attacttttgaagaatggtgggtaatttac 213  Q
    ||||||||||||||||||||||||||||||    
T  39141286 attacttttgaagaatggtgggtaatttac 39141257  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 52253805 - 52253760
Alignment:
Q  85 agaaagaagtgtgtttgatttttggaaagacaaaaatatccttata 130  Q
    |||||||||||||||| ||||||  |||||| ||||||||||||||    
T  52253805 agaaagaagtgtgtttaatttttaaaaagaccaaaatatccttata 52253760  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 128
Target Start/End: Original strand, 43147771 - 43147815
Alignment:
Q  84 gagaaagaagtgtgtttgatttttggaaagacaaaaatatcctta 128  Q
    |||||||| |||||||| ||||||| |||||| ||||||||||||    
T  43147771 gagaaagaggtgtgtttaatttttgaaaagaccaaaatatcctta 43147815  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 5042215 - 5042171
Alignment:
Q  82 aagagaaagaagtgtgtttgatttttggaaagacaaaaatatcct 126  Q
    |||||| |||||||||||| ||||||| |||||| ||||||||||    
T  5042215 aagagagagaagtgtgtttaatttttgaaaagactaaaatatcct 5042171  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 52906896 - 52906944
Alignment:
Q  82 aagagaaagaagtgtgtttgatttttggaaagacaaaaatatccttata 130  Q
    |||||||||||||||||||  |||||  |||||| ||||||||||||||    
T  52906896 aagagaaagaagtgtgtttagtttttaaaaagactaaaatatccttata 52906944  T

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