View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18315_low_88 (Length: 208)
Name: NF18315_low_88
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_88 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 11 - 192
Target Start/End: Complemental strand, 2403694 - 2403513
Alignment:
| Q |
11 |
gtagcataggtttgttttctgaattgggtgtttcatgaaattgaaatgttgatgaannnnnnngtttgcagaaagtaagataaagaacggtagttgaaac |
110 |
Q |
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| T |
2403694 |
gtagaataggtttgttttctgaattgggtgtttcatgaaattgaaatgttgatgaatttttttgtttgcagaaagtaagataaagaacggtagttgaaac |
2403595 |
T |
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| Q |
111 |
aaccatggctgtggttaaaacaagaccttgtgagattgaagtcatgttgtggtttggaacagaggaagaagaagtaacaaac |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2403594 |
aaccatggctgtggttaaaacaagaccttgtgagattgaagtcatgttgtggtttgaaacagaggaagaagaagtaacaaac |
2403513 |
T |
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