View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18315_low_89 (Length: 203)

Name: NF18315_low_89
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18315_low_89
NF18315_low_89
[»] chr4 (37 HSPs)
chr4 (72-186)||(16208801-16208917)
chr4 (1-71)||(42375088-42375158)
chr4 (1-71)||(6271780-6271850)
chr4 (1-71)||(47661920-47661990)
chr4 (1-72)||(23444258-23444329)
chr4 (1-71)||(51265523-51265593)
chr4 (1-64)||(6271699-6271762)
chr4 (1-71)||(35682156-35682226)
chr4 (1-64)||(30861852-30861915)
chr4 (1-64)||(51265442-51265505)
chr4 (1-71)||(53954688-53954758)
chr4 (1-62)||(23444347-23444408)
chr4 (1-65)||(3862624-3862688)
chr4 (1-65)||(3871381-3871445)
chr4 (1-69)||(26186092-26186160)
chr4 (9-71)||(30709986-30710048)
chr4 (1-58)||(35682244-35682301)
chr4 (1-72)||(44379919-44379990)
chr4 (7-65)||(5048884-5048942)
chr4 (5-62)||(47762607-47762664)
chr4 (6-62)||(44380013-44380069)
chr4 (7-70)||(46321439-46321502)
chr4 (1-72)||(47404583-47404645)
chr4 (34-73)||(50384102-50384141)
chr4 (2-72)||(31430459-31430520)
chr4 (34-72)||(40789281-40789319)
chr4 (1-49)||(47762686-47762734)
chr4 (34-65)||(52028554-52028585)
chr4 (5-47)||(25818387-25818429)
chr4 (1-35)||(26186042-26186076)
chr4 (1-47)||(47661856-47661902)
chr4 (12-65)||(2325069-2325122)
chr4 (34-71)||(24006069-24006106)
chr4 (35-68)||(24006165-24006198)
chr4 (1-34)||(55090023-55090056)
chr4 (1-34)||(55090074-55090107)
chr4 (40-72)||(34176246-34176278)
[»] chr5 (41 HSPs)
chr5 (1-71)||(2093927-2093997)
chr5 (1-72)||(16971222-16971293)
chr5 (1-69)||(29699445-29699513)
chr5 (5-71)||(291179-291245)
chr5 (1-71)||(2953268-2953338)
chr5 (1-70)||(3899917-3899986)
chr5 (4-71)||(13312254-13312321)
chr5 (1-68)||(16439131-16439198)
chr5 (1-62)||(28818995-28819056)
chr5 (1-65)||(19655236-19655300)
chr5 (5-72)||(30117817-30117884)
chr5 (4-65)||(32485630-32485691)
chr5 (6-70)||(11983247-11983310)
chr5 (1-64)||(291094-291157)
chr5 (1-64)||(19598329-19598392)
chr5 (5-64)||(19655155-19655214)
chr5 (2-72)||(2356351-2356420)
chr5 (1-71)||(12913793-12913863)
chr5 (1-58)||(12913881-12913938)
chr5 (1-65)||(26662477-26662542)
chr5 (1-65)||(26934072-26934137)
chr5 (5-68)||(1638450-1638513)
chr5 (1-73)||(3180138-3180209)
chr5 (14-69)||(19272258-19272313)
chr5 (1-71)||(14167143-14167212)
chr5 (1-35)||(16439216-16439250)
chr5 (1-47)||(17849223-17849269)
chr5 (33-71)||(28818916-28818954)
chr5 (24-62)||(39777050-39777088)
chr5 (1-62)||(30117906-30117967)
chr5 (8-72)||(29385390-29385454)
chr5 (14-62)||(39031242-39031290)
chr5 (8-71)||(19417435-19417498)
chr5 (7-72)||(7137630-7137695)
chr5 (14-72)||(22082988-22083045)
chr5 (1-47)||(29699381-29699427)
chr5 (1-62)||(228428-228489)
chr5 (35-71)||(3180059-3180095)
chr5 (35-71)||(26662398-26662434)
chr5 (35-71)||(26933993-26934029)
chr5 (8-64)||(37219700-37219756)
[»] chr8 (30 HSPs)
chr8 (1-72)||(5033239-5033310)
chr8 (1-74)||(33841578-33841651)
chr8 (1-73)||(35440957-35441029)
chr8 (1-72)||(5667086-5667157)
chr8 (2-71)||(45191117-45191186)
chr8 (1-64)||(5033158-5033221)
chr8 (1-68)||(43844547-43844614)
chr8 (1-65)||(8796418-8796482)
chr8 (1-64)||(8243466-8243529)
chr8 (1-64)||(33841669-33841732)
chr8 (1-64)||(35441047-35441110)
chr8 (5-57)||(10086839-10086891)
chr8 (1-68)||(8796500-8796567)
chr8 (5-64)||(45191209-45191268)
chr8 (1-64)||(2581822-2581885)
chr8 (5-64)||(10086754-10086813)
chr8 (1-64)||(22649842-22649905)
chr8 (1-68)||(34229634-34229701)
chr8 (10-71)||(1880229-1880289)
chr8 (1-70)||(4958677-4958745)
chr8 (1-64)||(5667175-5667238)
chr8 (1-68)||(39851033-39851100)
chr8 (10-68)||(6894105-6894163)
chr8 (14-71)||(35031706-35031763)
chr8 (1-36)||(35031639-35031674)
chr8 (1-72)||(43844460-43844531)
chr8 (1-71)||(8243387-8243448)
chr8 (34-72)||(34541801-34541839)
chr8 (35-72)||(6296603-6296640)
chr8 (1-37)||(39139839-39139875)
[»] chr3 (28 HSPs)
chr3 (1-71)||(45103099-45103169)
chr3 (5-72)||(51046062-51046129)
chr3 (1-71)||(1801436-1801506)
chr3 (7-68)||(18321644-18321705)
chr3 (1-72)||(41753042-41753113)
chr3 (1-71)||(30734480-30734550)
chr3 (1-65)||(33689172-33689236)
chr3 (5-64)||(41752961-41753020)
chr3 (1-62)||(43139787-43139848)
chr3 (1-62)||(47492125-47492186)
chr3 (1-64)||(30734399-30734462)
chr3 (1-64)||(51046151-51046214)
chr3 (33-70)||(49418691-49418728)
chr3 (31-71)||(1272557-1272597)
chr3 (1-57)||(30580834-30580890)
chr3 (1-65)||(50524780-50524844)
chr3 (6-65)||(30580752-30580811)
chr3 (1-64)||(50549972-50550035)
chr3 (1-47)||(47492061-47492107)
chr3 (5-71)||(50524692-50524758)
chr3 (14-68)||(55223225-55223279)
chr3 (1-70)||(21024086-21024154)
chr3 (34-71)||(49414525-49414562)
chr3 (5-35)||(47677337-47677367)
chr3 (1-34)||(30476552-30476585)
chr3 (34-71)||(33689278-33689315)
chr3 (29-65)||(35538960-35538996)
chr3 (1-37)||(47677279-47677315)
[»] chr2 (25 HSPs)
chr2 (1-71)||(16514502-16514572)
chr2 (1-72)||(38933665-38933736)
chr2 (6-72)||(14892343-14892409)
chr2 (1-71)||(37961784-37961854)
chr2 (1-68)||(14470585-14470652)
chr2 (1-64)||(29508769-29508832)
chr2 (1-63)||(6217222-6217284)
chr2 (1-59)||(14229355-14229413)
chr2 (1-57)||(33018623-33018679)
chr2 (1-71)||(29508680-29508751)
chr2 (5-71)||(6722033-6722099)
chr2 (2-68)||(32545867-32545933)
chr2 (1-64)||(16514421-16514484)
chr2 (1-59)||(9173059-9173117)
chr2 (1-65)||(24115998-24116062)
chr2 (7-65)||(32545782-32545840)
chr2 (15-65)||(45213892-45213942)
chr2 (1-47)||(6721965-6722011)
chr2 (1-51)||(29925580-29925630)
chr2 (1-43)||(37762079-37762121)
chr2 (8-70)||(39819054-39819116)
chr2 (34-71)||(2893962-2893999)
chr2 (34-71)||(14229454-14229491)
chr2 (27-64)||(37632988-37633025)
chr2 (4-68)||(24115913-24115977)
[»] chr1 (43 HSPs)
chr1 (1-71)||(48993907-48993977)
chr1 (1-71)||(49444903-49444973)
chr1 (1-72)||(29179586-29179657)
chr1 (5-65)||(1091626-1091686)
chr1 (1-72)||(5995447-5995518)
chr1 (1-64)||(48993995-48994058)
chr1 (1-71)||(28395627-28395697)
chr1 (1-70)||(32540826-32540895)
chr1 (1-66)||(33219651-33219716)
chr1 (1-65)||(9157306-9157370)
chr1 (1-65)||(21630038-21630102)
chr1 (1-64)||(29179675-29179738)
chr1 (1-64)||(37155043-37155106)
chr1 (1-71)||(15220889-15220959)
chr1 (6-64)||(36290490-36290548)
chr1 (1-68)||(29371446-29371513)
chr1 (5-64)||(46931994-46932053)
chr1 (5-71)||(46932064-46932129)
chr1 (1-62)||(44706862-44706923)
chr1 (1-54)||(45728294-45728347)
chr1 (1-65)||(17127642-17127706)
chr1 (1-64)||(17127561-17127624)
chr1 (1-54)||(32540755-32540808)
chr1 (5-68)||(4608989-4609052)
chr1 (1-64)||(5995366-5995429)
chr1 (8-71)||(6539664-6539727)
chr1 (8-71)||(9884831-9884894)
chr1 (9-72)||(36381581-36381644)
chr1 (5-64)||(48498412-48498471)
chr1 (1-35)||(1819515-1819549)
chr1 (34-71)||(48823884-48823921)
chr1 (9-65)||(31342259-31342315)
chr1 (1-35)||(4609074-4609108)
chr1 (34-72)||(46333944-46333982)
chr1 (35-72)||(44183438-44183475)
chr1 (5-37)||(8337875-8337907)
chr1 (1-33)||(9157388-9157420)
chr1 (34-70)||(28928779-28928815)
chr1 (1-37)||(32157603-32157639)
chr1 (1-33)||(33219601-33219633)
chr1 (7-35)||(36774836-36774864)
chr1 (34-62)||(38674605-38674633)
chr1 (1-33)||(46334024-46334056)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-72)||(49692-49763)
[»] chr7 (20 HSPs)
chr7 (5-72)||(11016951-11017018)
chr7 (1-72)||(4290623-4290694)
chr7 (1-64)||(48000691-48000754)
chr7 (2-64)||(41018307-41018369)
chr7 (1-71)||(42628373-42628443)
chr7 (3-64)||(4290542-4290603)
chr7 (1-64)||(11016866-11016929)
chr7 (5-64)||(34854777-34854836)
chr7 (1-64)||(38975802-38975865)
chr7 (5-72)||(48000819-48000886)
chr7 (2-64)||(45231929-45231991)
chr7 (1-70)||(27028719-27028788)
chr7 (5-59)||(27028875-27028929)
chr7 (1-71)||(38975883-38975953)
chr7 (1-65)||(41945933-41945997)
chr7 (1-38)||(15027620-15027657)
chr7 (5-64)||(15027539-15027598)
chr7 (34-72)||(41018226-41018264)
chr7 (1-37)||(4649400-4649436)
chr7 (35-71)||(45231853-45231889)
[»] chr6 (16 HSPs)
chr6 (2-71)||(24618591-24618660)
chr6 (1-71)||(24587451-24587521)
chr6 (1-71)||(17750980-17751050)
chr6 (1-64)||(24975749-24975812)
chr6 (1-71)||(13043535-13043605)
chr6 (1-55)||(12343178-12343232)
chr6 (1-62)||(551243-551304)
chr6 (5-68)||(17750896-17750958)
chr6 (5-71)||(7384478-7384544)
chr6 (5-35)||(2315330-2315360)
chr6 (34-71)||(31654304-31654341)
chr6 (7-72)||(2913932-2913999)
chr6 (28-71)||(6299164-6299208)
chr6 (28-71)||(6305974-6306018)
chr6 (6-70)||(13691239-13691302)
chr6 (40-68)||(24618709-24618737)
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-68)||(19115-19182)
[»] scaffold0586 (2 HSPs)
scaffold0586 (1-65)||(7125-7188)
scaffold0586 (1-58)||(7050-7107)
[»] scaffold0161 (2 HSPs)
scaffold0161 (2-64)||(27299-27361)
scaffold0161 (1-64)||(27217-27280)
[»] scaffold1033 (1 HSPs)
scaffold1033 (1-32)||(2291-2322)
[»] scaffold1029 (1 HSPs)
scaffold1029 (1-32)||(2291-2322)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 4e-46; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 16208801 - 16208917
Alignment:
Q  72 ggggaacgggagcgtgtcctgcaagag--agagatccgttgtgcagaccgttaaggctaaaggtaacattgaattttatggaacaatattttatttcact 169  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  16208801 ggggaacaggagcgtgtcctgcaagagagagagatccgttgtgcagaccgttaaggctaaaggtaacactgaattttatggaacaattttttatttcact 16208900  T
Q  170 aattggatacttattat 186  Q
    |||||||||||||||||    
T  16208901 aattggatacttattat 16208917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 42375088 - 42375158
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42375088 caagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 42375158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6271780 - 6271850
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||    
T  6271780 caagcattgtgacattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagtgctaccc 6271850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47661920 - 47661990
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  47661920 caagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaaatgctaccc 47661990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23444329 - 23444258
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||    
T  23444329 caagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaaatgctacccg 23444258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 51265523 - 51265593
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  51265523 caagcattgtgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctaccc 51265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 6271762 - 6271699
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  6271762 caagcattgtggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 6271699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35682226 - 35682156
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| ||| ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  35682226 caagtattatgacattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagtgctaccc 35682156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30861852 - 30861915
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  30861852 caagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagt 30861915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 51265505 - 51265442
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  51265505 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 51265442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 53954688 - 53954758
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||||| ||||  ||||||||||||| |||||||||||||||||||  |||||||||||    
T  53954688 caagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactctatgtcacaaaagtgctaccc 53954758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23444347 - 23444408
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  23444347 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaa 23444408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3862624 - 3862688
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||| |||||    
T  3862624 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagtg 3862688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 3871381 - 3871445
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||| |||||    
T  3871381 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagtg 3871445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26186092 - 26186160
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctac 69  Q
    |||||||||||| ||||||||||  |||||||| |||| | ||||||||||||||||||||||||||||    
T  26186092 caagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactctatgtcacccaagtgctac 26186160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 30709986 - 30710048
Alignment:
Q  9 gtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  30709986 gtgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtgccaccc 30710048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35682244 - 35682301
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcac 58  Q
    ||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||    
T  35682244 caagcattgtgacattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcac 35682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44379990 - 44379919
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||||||| | ||||  ||||||| ||||| |||| ||||||||||||| ||||||||||||||    
T  44379990 caagcattgtgacattataattggccaatgtcgccaatgtcactcaactctatgtcatccaagtgctacccg 44379919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 5048884 - 5048942
Alignment:
Q  7 ttgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||| ||||||| |||||||| |||| |||||||||||||||||| |||||||    
T  5048884 ttgtgacattatgattgaccaatgtcatcaatgtcacccaactctatgtcatccaagtg 5048942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 47762664 - 47762607
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    |||||| |||||||||||| |||||||||| |||||||| || |||||||||||||||    
T  47762664 cattgtaacattgtgattggtcaatgtcacaaatatcactcagctctatgtcacccaa 47762607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 44380013 - 44380069
Alignment:
Q  6 attgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    ||||| |||||||||||| ||||| |||||||| |||| ||||||||||||||||||    
T  44380013 attgtaacattgtgattggtcaatatcaccaatgtcactcaactctatgtcacccaa 44380069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 46321439 - 46321502
Alignment:
Q  7 ttgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    ||||||||||||| ||| |||||||||||||||||||| | | | ||||||| |||||||||||    
T  46321439 ttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagtgctacc 46321502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 47404645 - 47404583
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||||||||||||||         |||||| |||||||||||||||||||||||||||||||||    
T  47404645 caagcattgtgacattgtgattg---------accaatgtcacccaactctatgtcacccaagtgctacccg 47404583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 50384141 - 50384102
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctacccgg 73  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  50384141 ccaatgtcacccaactctatgtcacccaagtgctacccgg 50384102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 31430520 - 31430459
Alignment:
Q  2 aagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||||||||||||| |||||||||||         ||||||||||||||||||||||||||||    
T  31430520 aagcattgtgacattgtgattggtcaatgtcacc---------caactctatgtcacccaagtgctacccg 31430459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 40789281 - 40789319
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  40789281 ccaatatcaccaaactctatgtcacccaagtgctacccg 40789319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 47762686 - 47762734
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaact 49  Q
    |||||||||||||||| || |||| ||||||||||||||||| ||||||    
T  47762686 caagcattgtgacattatggttgaccaatgtcaccaatatcatccaact 47762734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 52028585 - 52028554
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||||||||||||||||||||||||||    
T  52028585 ccaatatcacccaactctatgtcacccaagtg 52028554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 25818429 - 25818387
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaa 47  Q
    |||||||||||||||||||| |||||||| |||| ||||||||    
T  25818429 cattgtgacattgtgattgaccaatgtcatcaatgtcacccaa 25818387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 26186076 - 26186042
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcacc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  26186076 caagcattgtgacattgtgattgaccaatgtcacc 26186042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47661902 - 47661856
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaa 47  Q
    ||||||||||| |||||||||||  ||||||||||||| ||||||||    
T  47661902 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 47661856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 2325069 - 2325122
Alignment:
Q  12 acattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||||  ||||||||| |||| ||||| ||||||||||||| ||||||    
T  2325069 acattgtgatttgtcaatgtcatcaatgtcaccaaactctatgtcactcaagtg 2325122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 24006106 - 24006069
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  24006106 ccaatgtcacccaactgtatgtcacccaagtgctaccc 24006069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 24006165 - 24006198
Alignment:
Q  35 caatatcacccaactctatgtcacccaagtgcta 68  Q
    |||| |||||||||||||||||||||||||||||    
T  24006165 caatgtcacccaactctatgtcacccaagtgcta 24006198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 55090056 - 55090023
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcac 34  Q
    |||||||||||||||||||||||| |||||||||    
T  55090056 caagcattgtgacattgtgattgaccaatgtcac 55090023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 55090074 - 55090107
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcac 34  Q
    |||||||||||||||||||||||| |||||||||    
T  55090074 caagcattgtgacattgtgattgaccaatgtcac 55090107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 34176246 - 34176278
Alignment:
Q  40 tcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||||||||||| |||||||||||||    
T  34176246 tcacccaactctatgtcactcaagtgctacccg 34176278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2093997 - 2093927
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2093997 caagcattatgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 2093927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 16971222 - 16971293
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  16971222 caagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccg 16971293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29699445 - 29699513
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctac 69  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  29699445 caagcattgtgacattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtgctac 29699513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 291179 - 291245
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  291179 cattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagtgctaccc 291245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 2953268 - 2953338
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||    
T  2953268 caagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 2953338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 3899917 - 3899986
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||    
T  3899917 caagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctacc 3899986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 13312321 - 13312254
Alignment:
Q  4 gcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||| |||||||||||    
T  13312321 gcattgtgacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagtgctaccc 13312254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16439198 - 16439131
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||    
T  16439198 caagcattgtgacattgtgattgaccaatgtcaccaatattacccaactctatatcatccaagtgcta 16439131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 28818995 - 28819056
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    |||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  28818995 caagcattgtgacattatgattgaccaatgtcaccaatatcactcaactctatgtcacccaa 28819056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 19655236 - 19655300
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||||||||||||||||  ||||||||||||| |||| |||||||||||||||||||||    
T  19655236 caagcattgtgacattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagtg 19655300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 30117884 - 30117817
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||| |||||||||    
T  30117884 cattgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaaatgctacccg 30117817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 32485630 - 32485691
Alignment:
Q  4 gcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||||||    
T  32485630 gcattgtgatattgtgattgatcaatgtcaccaatgtcacccaactctgtgtcacacaagtg 32485691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 11983310 - 11983247
Alignment:
Q  6 attgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    ||||||||||| ||||||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  11983310 attgtgacattttgattgaccaatgtcaccaatatca-ccaattctatgtcacccaagtgctacc 11983247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 291157 - 291094
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||| |||||    
T  291157 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaagt 291094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19598392 - 19598329
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||||||  ||||||||||| ||||||||||||| | |||||||||||||||||||||||    
T  19598392 caagcattgtggtattgtgattgaccaatgtcaccaatgttacccaactctatgtcacccaagt 19598329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 19655214 - 19655155
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  19655214 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 19655155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 2356351 - 2356420
Alignment:
Q  2 aagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||||| |||||||  ||||||||||||| ||| ||||||||||||||| |||||||||||||    
T  2356351 aagcattgtgacat-gtgattggccaatgtcaccaatgtcatccaactctatgtcacacaagtgctacccg 2356420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 12913863 - 12913793
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| ||||||||||||||||||  ||||||||||||| |||| ||||| |||||||| ||||||||||||    
T  12913863 caagaattgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcacacaagtgctaccc 12913793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12913881 - 12913938
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcac 58  Q
    |||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  12913881 caagcattatgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 12913938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26662477 - 26662542
Alignment:
Q  1 caagcattgtgacattgtgatt-gatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||    
T  26662477 caagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcacacaagtg 26662542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 26934072 - 26934137
Alignment:
Q  1 caagcattgtgacattgtgatt-gatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||| ||||||||||||||||| || ||||||||||||||||||||||||||| ||||| ||||||    
T  26934072 caagtattgtgacattgtgatttgaccaatgtcaccaatatcacccaactctaagtcacacaagtg 26934137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 1638513 - 1638450
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||||||||||||||  |||| |||| |||||||||||||||||| ||||| ||||||||    
T  1638513 cattgtgacattgtgattggccaatatcacaaatatcacccaactctatatcacctaagtgcta 1638450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3180138 - 3180209
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccgg 73  Q
    ||||||||||| |||||||||||| ||||||||||||| | | |||||||||||| || ||||||||| ||||    
T  3180138 caagcattgtggcattgtgattgaccaatgtcaccaatgtta-ccaactctatgtgacacaagtgctatccgg 3180209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 19272313 - 19272258
Alignment:
Q  14 attgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctac 69  Q
    |||||||||| ||||| ||||||||||||| ||||||||||||| |||| ||||||    
T  19272313 attgtgattggtcaatttcaccaatatcactcaactctatgtcatccaaatgctac 19272258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 14167212 - 14167143
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| |||||||||||||||||  |||| |||||||||||||  ||| ||||| |||||||||||||||||    
T  14167212 caaggattgtgacattgtgattcgtcaaagtcaccaatatca-tcaattctatatcacccaagtgctaccc 14167143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 16439216 - 16439250
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  16439216 caagcattgtgacattgtgattgatcaatgtcacc 16439250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 17849223 - 17849269
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaa 47  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||    
T  17849223 caagcattgcgatattgtgattgaccaatgtcaccaatatcacccaa 17849269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 28818954 - 28818916
Alignment:
Q  33 accaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  28818954 accaatgtcacccaactctatgtcacccaagtgctaccc 28818916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 39777088 - 39777050
Alignment:
Q  24 atcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  39777088 atcaatgtcaccaatgtcacccaactctatgtcacccaa 39777050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 30117906 - 30117967
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    ||||||||||| |||| ||||||| |||| |||||||| ||| |||||||||||||| ||||    
T  30117906 caagcattgtggcattatgattgaccaatatcaccaatgtcatccaactctatgtcatccaa 30117967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 29385390 - 29385454
Alignment:
Q  8 tgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||| |||  ||||||||||||| ||||| | | | |||||||||||||||||||||    
T  29385390 tgtgacattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctacccg 29385454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 39031242 - 39031290
Alignment:
Q  14 attgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    |||||||||||||| |||||||||| |||||| ||||||||||| ||||    
T  39031242 attgtgattgatcagtgtcaccaatgtcaccccactctatgtcatccaa 39031290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 19417498 - 19417435
Alignment:
Q  8 tgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||  |||| ||||||||||||| ||||| | | | ||||||||||||||||||||    
T  19417498 tgtgacattgtagttgaccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctaccc 19417435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 7137695 - 7137630
Alignment:
Q  7 ttgtgacattgtgattgatcaatgtcaccaatatcacccaact-ctatgtcacccaagtgctacccg 72  Q
    ||||||||||||| ||| |||||||||||||| ||| |||||| | ||||||||||||| |||||||    
T  7137695 ttgtgacattgtggttggtcaatgtcaccaatttca-ccaactgcaatgtcacccaagtactacccg 7137630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 22083045 - 22082988
Alignment:
Q  14 attgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||| |||||||||  ||| |||| |||||||||||||||||| |||||||||    
T  22083045 attgtgattggtcaatgtcattaatgtcacacaactctatgtcacccaa-tgctacccg 22082988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 29699427 - 29699381
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaa 47  Q
    ||||||||||| |||||||||||  ||||||||||||| ||||||||    
T  29699427 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaa 29699381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 228428 - 228489
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    |||||||| |||||||||||||||  ||| ||| |||||| |||||||| ||||||| ||||    
T  228428 caagcattttgacattgtgattgacaaatctcatcaatattacccaactttatgtcatccaa 228489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 3180095 - 3180059
Alignment:
Q  35 caatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  3180095 caatgtcacccaactctatgtcacacaagtgctaccc 3180059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 26662434 - 26662398
Alignment:
Q  35 caatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  26662434 caatgtcacccaactctatgtcacacaagtgctaccc 26662398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 26934029 - 26933993
Alignment:
Q  35 caatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  26934029 caatgtcacccaactctatgtcacacaagtgctaccc 26933993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 37219756 - 37219700
Alignment:
Q  8 tgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||| |||| |||| ||||||||||||||||||| ||  |||||||||| ||||    
T  37219756 tgtgacactgtggttgaccaatgtcaccaatatcaccaaatactatgtcacctaagt 37219700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 3e-28; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5033239 - 5033310
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  5033239 caagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccg 5033310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 33841651 - 33841578
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccggg 74  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33841651 caagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccggg 33841578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 35441029 - 35440957
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccgg 73  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  35441029 caagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagtgctacccgg 35440957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5667157 - 5667086
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5667157 caagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagtgctacccg 5667086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 45191186 - 45191117
Alignment:
Q  2 aagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||    
T  45191186 aagcattgtggcattgtgattaatcaatgtcaccaatatcatccaactctatgtcacccaagtgttaccc 45191117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5033221 - 5033158
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  5033221 caagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 5033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 43844547 - 43844614
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||    
T  43844547 caagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaattgcta 43844614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8796482 - 8796418
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||||||||||    
T  8796482 caagcattgtgacattgtgattgaccaatatcacaaatatcacctaactctatgtcacccaagtg 8796418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 8243466 - 8243529
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||||||    
T  8243466 caagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcacccaagt 8243529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33841669 - 33841732
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||| |||||| |||||||||||||| |||||||||||||||||||||||||    
T  33841669 caagcattgtggcattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35441047 - 35441110
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  35441047 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 35441110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 10086839 - 10086891
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtca 57  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  10086839 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 8796500 - 8796567
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||||||||||| |||||| |||||||||||||||||||| | ||||||||||| || ||||||    
T  8796500 caagcattgtgacattttgattggtcaatgtcaccaatatcacctagctctatgtcacacatgtgcta 8796567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 45191209 - 45191268
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||||||    
T  45191209 cattgtaacattttgattggtcaatgtcaccaatatcatccaactctatgtcacccaagt 45191268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 2581885 - 2581822
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  |||||||| |||| |||||||| ||||||||||||||||    
T  2581885 caagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagt 2581822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 10086813 - 10086754
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||| ||||||||||||||| ||||||||| ||| |||||||| ||||||||||||||||    
T  10086813 cattatgacattgtgattgaccaatgtcactaatgtcacccaattctatgtcacccaagt 10086754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22649905 - 22649842
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| ||||||||||   ||||||||||||| |||| ||||||||||||||||||||    
T  22649905 caagcattgtggcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagt 22649842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 34229701 - 34229634
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||| |||||||||||||||   ||||||| ||| ||||||||||||||||||| |||||||||    
T  34229701 caagcattctgacattgtgattgactcatgtcactaatgtcacccaactctatgtcacacaagtgcta 34229634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 1880289 - 1880229
Alignment:
Q  10 tgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||| |||||||||||| | ||||| || |||||||||||||||||||||||    
T  1880289 tgacattgtgattggtcaatgtcaccagtgtcacc-aattctatgtcacccaagtgctaccc 1880229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 4958677 - 4958745
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    |||| |||||||| ||||||||| |||||||||| ||||||| | ||||||||||||| |||||||||||    
T  4958677 caagtattgtgac-ttgtgattggtcaatgtcactaatatcatctaactctatgtcacgcaagtgctacc 4958745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 5667175 - 5667238
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||| ||||||||| ||||  ||||||||||||| ||| | |||||||||||||||||||    
T  5667175 caagcattatgacattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagt 5667238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 39851033 - 39851100
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||| | | |||||||||| |||||||||||||| |||| ||||| ||||||| ||||||||||    
T  39851033 caagcattataatattgtgattggtcaatgtcaccaatgtcactcaactttatgtcatccaagtgcta 39851100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 6894105 - 6894163
Alignment:
Q  10 tgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||||| |||||||||||||||||||||||| ||  ||||||||  |||||||||    
T  6894105 tgacattgtggttgatcaatgtcaccaatatcaccaaatgctatgtcatgcaagtgcta 6894163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 35031706 - 35031763
Alignment:
Q  14 attgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||| |||| |||| |||| |||||||| ||||||||||||||| |||||||||||    
T  35031706 attgtggttgaccaatatcacaaatatcactcaactctatgtcacctaagtgctaccc 35031763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35031674 - 35031639
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcacca 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35031674 caagcattgcgacattgtgattgatcaatgtcacca 35031639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 43844531 - 43844460
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||  ||||||| ||||| | |||| ||| ||||||||||||||||||||||| |||| || ||||||    
T  43844531 caagcatcctgacattatgattaaccaatatcatcaatatcacccaactctatgtcatccaaatgttacccg 43844460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8243448 - 8243387
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||| ||||||||||||||||||         |||| |||||||||||||||||||||||||||    
T  8243448 caagcattgtggcattgtgattgatcaatg---------tcactcaactctatgtcacccaagtgctaccc 8243387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 34541839 - 34541801
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  34541839 ccaatgtcacccaactttatgtcacccaagtgctacccg 34541801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 6296640 - 6296603
Alignment:
Q  35 caatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  6296640 caatgtcacccaactctatgtcatccaagtgctacccg 6296603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39139839 - 39139875
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaa 37  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  39139839 caaggattgtgacattgtgattgaccaatgtcaccaa 39139875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 45103169 - 45103099
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  45103169 caagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagtgctaccc 45103099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 51046129 - 51046062
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||||    
T  51046129 cattgtgacattatgattgatcaatgtcaccaatatcatccaactctatgtcatccaaatgctacccg 51046062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1801506 - 1801436
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||| |||||    
T  1801506 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgttaccc 1801436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 18321705 - 18321644
Alignment:
Q  7 ttgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||    
T  18321705 ttgtgacattgtgattgaccaatgtcaccaatatcacccaactctatgttgcccaagtgcta 18321644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 41753042 - 41753113
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||| |||||||||||  ||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  41753042 caagcattgtggcattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaagtgttacccg 41753113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 30734480 - 30734550
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| ||| ||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  30734480 caagtattatgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtgctaccc 30734550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 33689236 - 33689172
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||||||||||||||||| |||| ||| |||| ||||||||||||||||||| ||||||    
T  33689236 caagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaagtg 33689172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 41753020 - 41752961
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  41753020 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 41752961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 43139787 - 43139848
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    ||||||||||| |||||| ||||  ||||||||||||| |||||||||||||||||||||||    
T  43139787 caagcattgtggcattgttattggccaatgtcaccaatgtcacccaactctatgtcacccaa 43139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 47492125 - 47492186
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    |||||||||||||||||||||||  |||| | |||||| |||||||||||||||||||||||    
T  47492125 caagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcacccaa 47492186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 30734462 - 30734399
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||||||||||||| | ||||||||| |||| ||||| ||||||||||||| |||||    
T  30734462 caagcattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaagt 30734399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 51046151 - 51046214
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||| || |||||||||||  ||||||||||||| ||| |||||||||||||||||||||    
T  51046151 caagcattatggcattgtgattggccaatgtcaccaatgtcatccaactctatgtcacccaagt 51046214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 49418728 - 49418691
Alignment:
Q  33 accaatatcacccaactctatgtcacccaagtgctacc 70  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49418728 accaatatcacccaactctatgtcacccaagtgctacc 49418691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 1272557 - 1272597
Alignment:
Q  31 tcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  1272557 tcaccaatgtcacccaactctatgtcacccaagtgctaccc 1272597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30580834 - 30580890
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtca 57  Q
    |||||| ||||||||||||||||| ||||||||| ||| |||||||| |||||||||    
T  30580834 caagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 50524780 - 50524844
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||| || |||||||||||||  ||| |||||||| |||| |||||||||||||||||||||    
T  50524780 caagcatcgtaacattgtgattgactaatatcaccaatgtcactcaactctatgtcacccaagtg 50524844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 30580811 - 30580752
Alignment:
Q  6 attgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||||| |||||| ||||| |||||||| |||||||| |||||||||| ||||||    
T  30580811 attgtgacattatgattggtcaatatcaccaatgtcacccaattctatgtcactcaagtg 30580752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 50550035 - 50549972
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||||| | |||||||||| |||||||||||||||||||||| || ||| |||| |||||    
T  50550035 caagcattgtaatattgtgattggtcaatgtcaccaatatcacccagctttatatcactcaagt 50549972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47492107 - 47492061
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaa 47  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||    
T  47492107 caagcattgtgacattgtgattggccaatgtcaccaatgtcacccaa 47492061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 50524758 - 50524692
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||| |||||| ||||||||| || |||||| ||||||||||||| || |||| |||||    
T  50524758 cattgtgacattatgattggtcaatgtcatcattatcactcaactctatgtcatcccagtgttaccc 50524692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 55223279 - 55223225
Alignment:
Q  14 attgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    ||||||||||| |||| |||||||| ||||| ||||||||||||| |||||||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcacacaagtgcta 55223225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21024154 - 21024086
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    |||| |||||||||||||| |||| |||||||||||||||||  ||| | |||||||||||| |||||||    
T  21024154 caagaattgtgacattgtgtttgaccaatgtcaccaatatca-tcaattttatgtcacccaaatgctacc 21024086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 49414525 - 49414562
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  49414525 ccaatgtcacccaactctatgtcacccaagtgctaccc 49414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 47677337 - 47677367
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcacc 35  Q
    |||||||||||||||||||||||||||||||    
T  47677337 cattgtgacattgtgattgatcaatgtcacc 47677367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30476552 - 30476585
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcac 34  Q
    |||||||||||||||||||||||| |||||||||    
T  30476552 caagcattgtgacattgtgattgaccaatgtcac 30476585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 33689278 - 33689315
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  33689278 ccaatgtcacccaactcaatgtcacccaagtgctaccc 33689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 35538960 - 35538996
Alignment:
Q  29 tgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||| |||||||||||||||||| |||||||    
T  35538960 tgtcaccaatgtcacccaactctatgtcatccaagtg 35538996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47677315 - 47677279
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaa 37  Q
    ||||||||||||||||||||| | |||||||||||||    
T  47677315 caagcattgtgacattgtgatcggtcaatgtcaccaa 47677279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 16514502 - 16514572
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  16514502 caagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagtgctaccc 16514572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 38933665 - 38933736
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||||||| ||||||  ||| ||||||||| |||||||||||||||||||||||||||||||||    
T  38933665 caagcattgtgacattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagtgctacccg 38933736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 14892343 - 14892409
Alignment:
Q  6 attgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  14892343 attgtaacattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaaatgctacccg 14892409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 37961784 - 37961854
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||||| |||||    
T  37961784 caagcattgtggcattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaagtgttaccc 37961854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 14470652 - 14470585
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||||  |||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||    
T  14470652 caagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaagtgcta 14470585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29508769 - 29508832
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  29508769 caagcattgcggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 29508832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 6217284 - 6217222
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaag 63  Q
    ||||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||    
T  6217284 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaag 6217222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 14229413 - 14229355
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacc 59  Q
    |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||    
T  14229413 caagcattgtgacattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcacc 14229355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33018623 - 33018679
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtca 57  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  33018623 caagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29508751 - 29508680
Alignment:
Q  1 caagcattgtgacatt-gtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||| |||| ||||||| |||||||||||||| |||||||||||||||||||| ||||| |||||    
T  29508751 caagcattgtggcatttgtgattggtcaatgtcaccaatgtcacccaactctatgtcacctaagtgttaccc 29508680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 6722033 - 6722099
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||||||  |||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  6722033 cattgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaagtgctaccc 6722099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 32545867 - 32545933
Alignment:
Q  2 aagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    ||||||||||||||| ||||||  ||||||||||||| ||||  |||||||||||||||||||||||    
T  32545867 aagcattgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagtgcta 32545933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 16514484 - 16514421
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||| || ||| |||||||  ||||||||||||| |||||||||||||||||||||||||    
T  16514484 caagcattatggcatagtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 16514421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9173059 - 9173117
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacc 59  Q
    ||||||||||| |||||||||||  |||| |||||||| ||||||||||||||||||||    
T  9173059 caagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcacc 9173117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24115998 - 24116062
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||| |||||||||||||| |||| |||| |||  |||||||||||||||||| ||||||    
T  24115998 caagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagtg 24116062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 32545840 - 32545782
Alignment:
Q  7 ttgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||| ||| |||| ||||||||||||| ||||| |||||||||||||| |||||    
T  32545840 ttgtgacatcgtggttgaccaatgtcaccaatgtcacctaactctatgtcacctaagtg 32545782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 45213892 - 45213942
Alignment:
Q  15 ttgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||| ||||||    
T  45213892 ttgtgattggtcaatgtcatcaatgtcacccaactctatgtcacacaagtg 45213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 6722011 - 6721965
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaa 47  Q
    |||||||||||| |||||||||| |||||||||||||| ||| ||||    
T  6722011 caagcattgtgatattgtgattggtcaatgtcaccaatgtcatccaa 6721965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 29925630 - 29925580
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactct 51  Q
    |||||||| |||||||||||  |  ||||||||||||||||||||||||||    
T  29925630 caagcattctgacattgtgaggggccaatgtcaccaatatcacccaactct 29925580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37762079 - 37762121
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcac 43  Q
    |||||||||||| ||||||||||| | ||||||||||||||||    
T  37762079 caagcattgtgatattgtgattgacccatgtcaccaatatcac 37762121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 39819116 - 39819054
Alignment:
Q  8 tgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    |||||||||||| |||  ||||||||||||| ||||| | | | |||||||||||||||||||    
T  39819116 tgtgacattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctacc 39819054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 2893999 - 2893962
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  2893999 ccaatgtcacccaactctatgtcacccaagtgttaccc 2893962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 14229454 - 14229491
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  14229454 ccaatgtcatccaactctatgtcacccaagtgctaccc 14229491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 37633025 - 37632988
Alignment:
Q  27 aatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  37633025 aatgtcaccaatgtcaccaaactctatgtcacccaagt 37632988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 24115977 - 24115913
Alignment:
Q  4 gcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    ||||||| ||||||||||||  |||||| |||||| | || ||||||||| |||| |||||||||    
T  24115977 gcattgtaacattgtgattggccaatgttaccaatgtgactcaactctatctcacacaagtgcta 24115913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 48993977 - 48993907
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  48993977 caagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 48993907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 49444973 - 49444903
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  49444973 caagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 49444903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 29179657 - 29179586
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| ||||||||||||||    
T  29179657 caagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagtgctacccg 29179586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 1091626 - 1091686
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  1091626 cattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcacccaagtg 1091686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5995447 - 5995518
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  5995447 caagcattgtggcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagtgttacccg 5995518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 48993995 - 48994058
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  48993995 caagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48994058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 28395697 - 28395627
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||| ||||||||    
T  28395697 caagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaaatgctaccc 28395627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32540826 - 32540895
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    |||||||||| |||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||||    
T  32540826 caagcattgtaacattgtgattggtcaatgtcaccaatgtcatccaattctatgtcacccaagtgctacc 32540895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33219651 - 33219716
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgc 66  Q
    |||||||| ||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||    
T  33219651 caagcattatgacattgtgattgatcaatgtcaccaatgtcatccaactctatgttacccaagtgc 33219716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 9157370 - 9157306
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||    
T  9157370 caagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagtg 9157306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 21630102 - 21630038
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||||||    
T  21630102 caagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcacgcaagtg 21630038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 29179675 - 29179738
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  29179675 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 29179738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 37155106 - 37155043
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||||||||||||||||||  ||||||||||||| ||||| |||||||||||||||||||    
T  37155106 caagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagt 37155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15220889 - 15220959
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||| ||||||||||  |||| |||||||| ||||||||||||||||||||||| ||||||||    
T  15220889 caagcattgtgagattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaaatgctaccc 15220959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 36290490 - 36290548
Alignment:
Q  6 attgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  36290490 attgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagt 36290548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29371446 - 29371513
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||| | ||||||||||| |||||||||    
T  29371446 caagcattgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagtgcta 29371513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 46932053 - 46931994
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  46932053 cattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 46931994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 46932064 - 46932129
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||    
T  46932064 cattgtggcattgtgattggtcaatgtcaccaatgtca-ccaactctatgtcacccaagtgttaccc 46932129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 44706862 - 44706923
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    ||||||||| | |||||||||||  ||||||||||||| |||||||||||||||||||||||    
T  44706862 caagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaa 44706923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45728347 - 45728294
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatg 54  Q
    |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||    
T  45728347 caagcattgtgatattgtgattggtcaatatcaccaatatcacccaactctatg 45728294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 17127642 - 17127706
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||||||||| |||||| |||||||||| ||| ||||| |||||||| |||||||||||    
T  17127642 caagcattgtgacattttgattggtcaatgtcactaatgtcacctaactctatatcacccaagtg 17127706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17127624 - 17127561
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||| |||||||| |||| |||||    
T  17127624 caagcattgtgacattgtgattggtcaatgtcactaatgtcacctaactctatatcacacaagt 17127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32540808 - 32540755
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatg 54  Q
    |||||||||||||||||||||||  ||||| ||||||| |||||||||||||||    
T  32540808 caagcattgtgacattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 4609052 - 4608989
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    ||||||||||||||||| | ||||||||||| || ||||||||||| || |||| |||||||||    
T  4609052 cattgtgacattgtgatgggtcaatgtcaccgatgtcacccaactccatatcacacaagtgcta 4608989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5995429 - 5995366
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  |||||| |||||| ||| | |||||||||||||||||||    
T  5995429 caagcattgtggcattgtgattggccaatgttaccaatgtcatcaaactctatgtcacccaagt 5995366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 6539664 - 6539727
Alignment:
Q  8 tgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||| |||| ||||||||||||||||| | | | | ||||||||||||||||||||    
T  6539664 tgtgacattgtggttgaccaatgtcaccaatatcatcaaccacaatgtcacccaagtgctaccc 6539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 9884894 - 9884831
Alignment:
Q  8 tgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||| |||| ||||||||||||| ||||| | | |||||||||| |||||||||||    
T  9884894 tgtgacattgtggttgaccaatgtcaccaatgtcaccaaccactatgtcaccaaagtgctaccc 9884831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 36381644 - 36381581
Alignment:
Q  9 gtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||||||||||||||  ||||||||||||||||| | || ||||||||| ||||||| ||||||    
T  36381644 gtgacattgtgattggccaatgtcaccaatatcatcgaattctatgtcatccaagtgttacccg 36381581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 48498471 - 48498412
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||  ||| ||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  48498471 cattgtggtattatgattgaccaatgtcacaaatgtcacccaactctatgtcacccaagt 48498412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1819549 - 1819515
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcacc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1819549 caagcattgtgacattgtgattgatcaatgtcacc 1819515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 48823921 - 48823884
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  48823921 ccaatgtcacccaactctatgtcacccaagtgctaccc 48823884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 31342315 - 31342259
Alignment:
Q  9 gtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||||||||  |||||||| |  | ||||||||||||||||||||||||||    
T  31342315 gtgacattgtgattggccaatgtcatcggtgtcacccaactctatgtcacccaagtg 31342259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4609074 - 4609108
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcacc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  4609074 caagcattgtgacattgtgattgaccaatgtcacc 4609108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 46333982 - 46333944
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  46333982 ccaatgtcatccaactctatgtcacccaagtgctacccg 46333944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 44183438 - 44183475
Alignment:
Q  35 caatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  44183438 caatgtcacctaactctatgtcacccaagtgctacccg 44183475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 8337907 - 8337875
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaa 37  Q
    |||||||||||||||||||| ||||||||||||    
T  8337907 cattgtgacattgtgattgaccaatgtcaccaa 8337875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9157388 - 9157420
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtca 33  Q
    |||||||||||| ||||||||||||||||||||    
T  9157388 caagcattgtgatattgtgattgatcaatgtca 9157420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 28928815 - 28928779
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  28928815 ccaatgtcaccaaactctatgtcacccaagtgctacc 28928779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32157603 - 32157639
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaa 37  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  32157603 caagcattgtgacactgtgattgaccaatgtcaccaa 32157639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33219633 - 33219601
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtca 33  Q
    |||||||||| ||||||||||||||||||||||    
T  33219633 caagcattgtaacattgtgattgatcaatgtca 33219601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 36774864 - 36774836
Alignment:
Q  7 ttgtgacattgtgattgatcaatgtcacc 35  Q
    |||||||||||||||||||||||||||||    
T  36774864 ttgtgacattgtgattgatcaatgtcacc 36774836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 38674605 - 38674633
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaa 62  Q
    |||||||||||||||||||||||||||||    
T  38674605 ccaatatcacccaactctatgtcacccaa 38674633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46334024 - 46334056
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtca 33  Q
    ||||||||||||||||||||||| |||||||||    
T  46334024 caagcattgtgacattgtgattggtcaatgtca 46334056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 49763 - 49692
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  49763 caagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagtgctacccg 49692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 8e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 11016951 - 11017018
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  11016951 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctacccg 11017018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4290623 - 4290694
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    |||| ||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||||||||    
T  4290623 caagaattgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagtgctacccg 4290694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 48000754 - 48000691
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  48000754 caagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagt 48000691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 41018307 - 41018369
Alignment:
Q  2 aagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  41018307 aagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 41018369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 42628373 - 42628443
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||| |||||||||||||  |||| |||||||| ||||||||||||||||||||||||||||||||    
T  42628373 caagcattgggacattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagtgctaccc 42628443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 4290603 - 4290542
Alignment:
Q  3 agcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  4290603 agcattgtggcattgtgattgaccaatatcaccaatatcacccaactctatgtcacccaagt 4290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 11016929 - 11016866
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  11016929 caagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 11016866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 34854777 - 34854836
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  34854777 cattgtggcattgtgattgaccaatgtcaccaatgtcacccaactctatgtcacccaagt 34854836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38975865 - 38975802
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  38975865 caagcattgtggcattgtgattgaccaatgttaccaatgtcacccaactctatgtcacccaagt 38975802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 48000819 - 48000886
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  48000819 cattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaagtgttacccg 48000886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 45231929 - 45231991
Alignment:
Q  2 aagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||| ||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  45231929 aagcattgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 45231991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 27028788 - 27028719
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    |||||||||||||||||||||||  ||||||||||||| |||| ||||| ||||||||| ||||||||||    
T  27028788 caagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagtgctacc 27028719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 27028875 - 27028929
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacc 59  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||    
T  27028875 cattgtgacattgtgattgaccaatgtcaccaacatcacccaagtctatgtcacc 27028929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 38975883 - 38975953
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||| |||| | ||||||||||||||||||| ||||| |||||||||||||| ||||| |||||    
T  38975883 caagcattgtggcattataattgatcaatgtcaccaatgtcacctaactctatgtcacctaagtgttaccc 38975953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 41945933 - 41945997
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||| ||||||||||||| |||| | |||||| |||| ||||| |||||||||||||||    
T  41945933 caagcattgtaacattgtgattgaccaatattaccaatgtcactcaactttatgtcacccaagtg 41945997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15027620 - 15027657
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaat 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  15027620 caagcattgtgacattgtgattggtcaatgtcaccaat 15027657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 15027598 - 15027539
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||  |||||||||| |||||||||||||| |||  ||||||||||| ||||||||    
T  15027598 cattgtggtattgtgattggtcaatgtcaccaatgtcaaacaactctatgttacccaagt 15027539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 41018264 - 41018226
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctacccg 72  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  41018264 ccaatgtcacccaactctatgtcatccaagtgctacccg 41018226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4649400 - 4649436
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaa 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  4649400 caagcatcgtgacattgtgattgaccaatgtcaccaa 4649436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 45231889 - 45231853
Alignment:
Q  35 caatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| |||||||||||||||||||||||||| |||||    
T  45231889 caatgtcacccaactctatgtcacccaagtgttaccc 45231853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 24618660 - 24618591
Alignment:
Q  2 aagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  24618660 aagcattatgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcactcaagtgctaccc 24618591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 24587521 - 24587451
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||||    
T  24587521 caagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaagtgctaccc 24587451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17750980 - 17751050
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||||||||||||||||||| |  |||||||| |||||||||||||||||||||||| ||||||||||||    
T  17750980 caagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaagtgctaccc 17751050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 24975812 - 24975749
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  24975812 caagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagt 24975749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13043535 - 13043605
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||||||||||| |||||||||   |||||||||||||||||| |||||||||||||||||| ||||||||    
T  13043535 caagcattgtgatattgtgattagccaatgtcaccaatatcactcaactctatgtcacccaaatgctaccc 13043605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12343178 - 12343232
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgt 55  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||||||||||||    
T  12343178 caagcattgtgacattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 551243 - 551304
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaa 62  Q
    ||||||||||| |||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  551243 caagcattgtggcattgtgattggccaatgtcaccaatatcatccaattctatgtcacccaa 551304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 17750958 - 17750896
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    |||||||||||||||||||| ||||||||||||| |||  |||||||||||||| |||||||||    
T  17750958 cattgtgacattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcacacaagtgcta 17750896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 7384544 - 7384478
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    |||| |||||||||||||| |||||||||| ||| ||| |||||||||| ||||| |||||||||||    
T  7384544 cattatgacattgtgattggtcaatgtcactaatgtcatccaactctatatcacctaagtgctaccc 7384478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Complemental strand, 2315360 - 2315330
Alignment:
Q  5 cattgtgacattgtgattgatcaatgtcacc 35  Q
    |||||||||||||||||||||||||||||||    
T  2315360 cattgtgacattgtgattgatcaatgtcacc 2315330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 31654341 - 31654304
Alignment:
Q  34 ccaatatcacccaactctatgtcacccaagtgctaccc 71  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  31654341 ccaatgtcacccaactctatatcacccaagtgctaccc 31654304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 2913932 - 2913999
Alignment:
Q  7 ttgtgacattgtgattgatcaatgtcaccaatatcacc--caactctatgtcacccaagtgctacccg 72  Q
    |||||||| |||| |||||||| |||||||||||||||  | ||  | ||||||||||||||||||||    
T  2913932 ttgtgacactgtggttgatcaacgtcaccaatatcaccaaccacaatgtgtcacccaagtgctacccg 2913999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 6299208 - 6299164
Alignment:
Q  28 atgtcaccaatatcacccaactc-tatgtcacccaagtgctaccc 71  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||    
T  6299208 atgtcaccaatgtcacccaactcttatgtcacacaagtgctaccc 6299164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 6306018 - 6305974
Alignment:
Q  28 atgtcaccaatatcacccaactc-tatgtcacccaagtgctaccc 71  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||    
T  6306018 atgtcaccaatgtcacccaactcttatgtcacacaagtgctaccc 6305974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 13691239 - 13691302
Alignment:
Q  6 attgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgctacc 70  Q
    |||||||||||||||||  |||||||| | ||||||| |||| ||||||| |||||| |||||||    
T  13691239 attgtgacattgtgattagtcaatgtcgctaatatca-ccaattctatgtaacccaattgctacc 13691302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 24618709 - 24618737
Alignment:
Q  40 tcacccaactctatgtcacccaagtgcta 68  Q
    |||||||||||||||||||||||||||||    
T  24618709 tcacccaactctatgtcacccaagtgcta 24618737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19182 - 19115
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtgcta 68  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||| |||||    
T  19182 caagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcacacaaatgcta 19115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 7125 - 7188
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagtg 65  Q
    |||||||||||||||||||||||  ||||||||||||| ||| ||||||||||||||| ||||||    
T  7125 caagcattgtgacattgtgattggccaatgtcaccaatgtca-ccaactctatgtcacacaagtg 7188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7107 - 7050
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcac 58  Q
    |||||||||||||||||||||||   ||| |||||||| |||||||||||||||||||    
T  7107 caagcattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 27299 - 27361
Alignment:
Q  2 aagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||||||||| |||||||||||  |||| |||||||| |||||||||||||| ||||||||||    
T  27299 aagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcacccaagt 27361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27280 - 27217
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 64  Q
    |||| ||| ||||||||||||||  |||| |||| ||| |||||||||||||||||||||||||    
T  27280 caagaattatgacattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 2291 - 2322
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtc 32  Q
    ||||||||||||||||||||||||||||||||    
T  2291 caagcattgtgacattgtgattgatcaatgtc 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 2291 - 2322
Alignment:
Q  1 caagcattgtgacattgtgattgatcaatgtc 32  Q
    ||||||||||||||||||||||||||||||||    
T  2291 caagcattgtgacattgtgattgatcaatgtc 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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