View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18315_low_9 (Length: 660)
Name: NF18315_low_9
Description: NF18315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18315_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 18 - 650
Target Start/End: Complemental strand, 47533354 - 47532723
Alignment:
| Q |
18 |
aagaaaagaagctcttattggaaaataaattaatgcagatcaatttactccatgagcagaagaagcctaactgttgaaccacaaatactaacagacccta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47533354 |
aagaaaagaagctcttattggaaaataaattaatgcagatcagtttactccatgagcagaagtagcttaactgttgaaccacaaatactaacagacccta |
47533255 |
T |
|
| Q |
118 |
ctctaggataacatgatcattagaagaacaagaaattaagctgtccatagcaaagaggcaaaattgttcctaaagaccatttagtttaatttttcaaaac |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47533254 |
ctctaggataacatgataattagaagaacaagaaattaagctgtccatagcaaagaggcataattgttcctaaagaccatttagtttaatttttcaaaac |
47533155 |
T |
|
| Q |
218 |
tactaattacttgaaacaataaaataaatttcttcgaaaacttgaaaattgtataatcaaaatgcatttaatgttctcactatcagttaataccgtaatt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47533154 |
tactaattacttgaaacaataaaataaatttcttcgaaaacttgaaaattgtataatcaaaatgcatttaatgttctcactatcagttaataccgtaatt |
47533055 |
T |
|
| Q |
318 |
cacattgcaacagggttctcaaattcactagcaatttaagcagagtataagctgattcatcctgaatttaacnnnnnnnaccatagctgcagttttagtt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47533054 |
cacattgcaacagggttctcaaattcactagcaatttaaccagagtataagctgattcatcctgaatttaac-ttttttaccatagctgcagttttagtt |
47532956 |
T |
|
| Q |
418 |
gtttccttttctattgatcactagttttccttccggtactttcactatcagtgtcggtggcttcactgtcagtgtttgtggcttcactatcggtgtccgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47532955 |
gtttccttttctattgatcactagttttccttccagtactttcactatcagtgtcggtggcttcactgtcagtgtttgtggcttcactatcggtgtccgt |
47532856 |
T |
|
| Q |
518 |
ggcttcactatcagtatctgtggcttcactttcactgtcactttcttccaaaacgtacaggtcatagatgcatatcaaggcagctgcagctgcagccata |
617 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47532855 |
ggcttcactatcagtatctgtggcttcactttcactgtcactttcttccaaaaggtacaggtcatagatgcatatcaaggcagctgcagctgcagccata |
47532756 |
T |
|
| Q |
618 |
atcatattcatacagagcattcgcctttgcttc |
650 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
47532755 |
atcatattcatacagagcattcgcctttgcttc |
47532723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 522 - 607
Target Start/End: Original strand, 39583603 - 39583688
Alignment:
| Q |
522 |
tcactatcagtatctgtggcttcactttcactgtcactttcttccaaaacgtacaggtcatagatgcatatcaaggcagctgcagc |
607 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||||||||||||||||| | ||||| |||||| |||||||| ||||| ||||| |
|
|
| T |
39583603 |
tcactatctgtgtctgtgtcttcactttcactgtcactttcttccaaatatttcaggtaatagatacatatcaatgcagccgcagc |
39583688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 601
Target Start/End: Complemental strand, 39627335 - 39627257
Alignment:
| Q |
526 |
tatcagtatctgtggcttcactttcactgtcactttcttc---caaaacgtacaggtcatagatgcatatcaaggcagc |
601 |
Q |
| |
|
||||||| || ||| ||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||| ||||| |
|
|
| T |
39627335 |
tatcagtgtccgtgtcttcactttcactatcactttcttcttccaaaatgtacaggtaatagatgcctatcaacgcagc |
39627257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 601
Target Start/End: Complemental strand, 39616598 - 39616535
Alignment:
| Q |
541 |
cttcactttcactgtcacttt---cttccaaaacgtacaggtcatagatgcatatcaaggcagc |
601 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |||||||| |||||||| |||||| ||||| |
|
|
| T |
39616598 |
cttcactttcactgtcactttcttcttctaaaaggtacaggtaatagatgcctatcaacgcagc |
39616535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 39617415 - 39617304
Alignment:
| Q |
72 |
agcagaagaagcctaactgttgaaccacaaatactaacagaccctactctaggataacatgatcattagaagaacaagaaattaagctgtccatagcaaa |
171 |
Q |
| |
|
||||||| ||||||| ||||||| | || ||||||||||||||| |||||||| |||||||| || ||||||| |||||| ||| ||| || ||||| |
|
|
| T |
39617415 |
agcagaacaagcctagctgttgagc-actaatactaacagacccgactctagg-taacatgaaaatcagaagaaacagaaatgaaggtgtgcacggcaaa |
39617318 |
T |
|
| Q |
172 |
gaggcaaaattgtt |
185 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
39617317 |
gaaacaaaattgtt |
39617304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 39627650 - 39627545
Alignment:
| Q |
163 |
catagcaaagaggcaaaattgttcctaaagaccatttagtttaatttttcaaaactactaattacttgaaacaataaaat-aaatttcttcgaaaacttg |
261 |
Q |
| |
|
||||||||||||||||||||||| |||| | | ||||||| ||| | |||||||||||||| | | |||||| | ||| ||||||| ||| |||||| |
|
|
| T |
39627650 |
catagcaaagaggcaaaattgtttctaatggcagtttagttcaatcatccaaaactactaatttcataaaacaaaataataaaatttcctcgttaacttg |
39627551 |
T |
|
| Q |
262 |
aaaatt |
267 |
Q |
| |
|
|||||| |
|
|
| T |
39627550 |
aaaatt |
39627545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University