View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18316_high_10 (Length: 209)

Name: NF18316_high_10
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18316_high_10
NF18316_high_10
[»] chr4 (6 HSPs)
chr4 (20-97)||(7793227-7793304)
chr4 (24-88)||(7772721-7772785)
chr4 (20-88)||(7778495-7778564)
chr4 (20-93)||(7909571-7909644)
chr4 (154-195)||(7793083-7793124)
chr4 (154-194)||(7778374-7778414)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 9e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 7793304 - 7793227
Alignment:
Q  20 gacataatggacatgttggttgttggttttcatgaccgattctatcttttttgtttgtatctttggtgtcattggttt 97  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7793304 gacataatgggcatgttggttgttggttttcttgaccgattctatcttttttgtttgtatctttggtgtcattggttt 7793227  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 7772785 - 7772721
Alignment:
Q  24 taatggacatgttggttgttggttttcatgaccgattctatcttttttgtttgtatctttggtgt 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7772785 taatgggcatgttggttgttggttttcatgaccgattctatcttttttgtttgtatatttggtgt 7772721  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 7778564 - 7778495
Alignment:
Q  20 gacataatggacatgttgg-ttgttggttttcatgaccgattctatcttttttgtttgtatctttggtgt 88  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7778564 gacataatgggcatgttgggttgttggttttcatgaccgattctatcttttttgtttgtatatttggtgt 7778495  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 7909571 - 7909644
Alignment:
Q  20 gacataatggacatgttggttgttggttttcatgaccgattctatcttttttgtttgtatctttggtgtcattg 93  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||    
T  7909571 gacataattggcatgttggttgttggttttcatgaccgattctatcttttttgtttgtttcttcggtttcattg 7909644  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 7793124 - 7793083
Alignment:
Q  154 cttcctttgagatatgttaaaatgtcactcacactccctttg 195  Q
    ||||||||||||||| |||||||||||||||||| |||||||    
T  7793124 cttcctttgagatatattaaaatgtcactcacaccccctttg 7793083  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 7778414 - 7778374
Alignment:
Q  154 cttcctttgagatatgttaaaatgtcactcacactcccttt 194  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  7778414 cttcctttaagatatgtcaaaatgtcactcacactcccttt 7778374  T

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