View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18316_high_3 (Length: 352)
Name: NF18316_high_3
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18316_high_3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 2796035 - 2795689
Alignment:
| Q |
1 |
ttccttcccctcatgcactcctagatgttgggcttatgcagatttgtcctaatgcttagctcaccacgtggaccataggcttaagtgccctataacattg |
100 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2796035 |
ttccttcccctcatgcagttctagatgttgggcttatgcagatttgtcctaatgcttagctcaccacgtggaccataggcttaagtgccctatcacattg |
2795936 |
T |
|
| Q |
101 |
tagtggatgatggtgaaatatattaatgtaacatgattaccttctgatatcttttagaagctcttgcatattcagcagcatactctaatgctatggcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |
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|
| T |
2795935 |
tagtggatgatggtgaaatatattaatgtaacatggttaccttctgatatcttttagaagctcttgcatattcagcagcataaacgaatgcttcggcttc |
2795836 |
T |
|
| Q |
201 |
ttgtcgcttcttaagagcagcttgtatcttctcttcagtgttcatgtctgatacctccttagcctatagcaaacaatgaaccaaggtataaatgcataaa |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2795835 |
ttgtcgcttcttaagagcagcttctatcttctcttcagtgttcatgtctgatacctccttagcctatagcaaacaatgaaccaaggtataaatgcataaa |
2795736 |
T |
|
| Q |
301 |
gaaagttgcaatggtatccaaccaataattatatgagagacagaagt |
347 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2795735 |
gaaagttgcaatcgtatccaaccaataattatatgagagacagaagt |
2795689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 3159674 - 3159328
Alignment:
| Q |
1 |
ttccttcccctcatgcactcctagatgttgggcttatgcagatttgtcctaatgcttagctcaccacgtggaccataggcttaagtgccctataacattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
3159674 |
ttccttcccctcatgcactcctagatgttgggcttatgcagatttgtcctaatgcttagctcaccacgtggaccataggcttaagtgccctatcacattg |
3159575 |
T |
|
| Q |
101 |
tagtggatgatggtgaaatatattaatgtaacatgattaccttctgatatcttttagaagctcttgcatattcagcagcatactctaatgctatggcttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| || || ||||||||||| |||| || |||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
3159574 |
tagtggatgatggtgaaatatattaatgttacctggttaccttctgaaatctcttggaagctcttgcatattcagcagcataaactaatgctatgccttc |
3159475 |
T |
|
| Q |
201 |
ttgtcgcttcttaagagcagcttgtatcttctcttcagtgttcatgtctgatacctccttagcctatagcaaacaatgaaccaaggtataaatgcataaa |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
3159474 |
ttgtcgcttctcaagagcagcttctatcttctcttcagtgttcatgtccgatacctccttagcctaaagcaaacaatgaaccaaggtataaatgcataaa |
3159375 |
T |
|
| Q |
301 |
gaaagttgcaatggtatccaaccaataattatatgagagacagaagt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3159374 |
gaaagttgcaatggtatccaaccaataattatttgagagacagaagt |
3159328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 3145086 - 3144749
Alignment:
| Q |
1 |
ttccttcccctcatgcactcctagatgttgggcttatgcagatttgtcctaatgcttagctcaccacgtggaccataggcttaagtgccctataacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
3145086 |
ttccttcccctcatgcactcctagatgttgggcttatgcagatttgtcctaatgcttagctcaccaa-tggaccataggcttaagtgccctatcacattg |
3144988 |
T |
|
| Q |
101 |
tagtggatgatggtgaaatatattaatgtaacatgattaccttctgatatcttttagaagctcttgcatattcagcagcatactctaatgctatggcttc |
200 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||| |
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|
| T |
3144987 |
tag------atggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattcagcagcataaactaatgctaggccttc |
3144894 |
T |
|
| Q |
201 |
ttgtcgcttcttaagagcagcttgtatcttctcttcagtgttcatgtctgatacctccttagcctatagcaaacaatgaaccaaggtataaatgcataaa |
300 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3144893 |
ttgtcgcttctcacgagcagcttctatcttctcttcagtgttcatgtccgatacctccttagcctaaagcaaacaatgaaccaaggtataaatgcataaa |
3144794 |
T |
|
| Q |
301 |
gaaagttgcaatggtatccaaccaataattatatgagagacagaa |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3144793 |
gaaagttgcaatggtatccaaccaataattatttgagagacagaa |
3144749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 2875696 - 2876041
Alignment:
| Q |
1 |
ttccttcccctcatgcactcctagatgttgggcttatgcagatttgtcctaatgcttagctcaccacgtggaccataggcttaagtgccctataacattg |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| |||||||||| |||||||||||| |||| || ||| ||||| || ||||||||||||| |||||| |
|
|
| T |
2875696 |
ttccgtcccctcatccactcctagatgttgggct-atgcagatttatcctaatgcttacctcatcatgtgaaccatgggattaagtgccctatcacattg |
2875794 |
T |
|
| Q |
101 |
tagtggatgatggtgaaatatattaatgtaacatgattaccttctgatatcttttagaagctcttgcatattcagcagcatactctaatgctatggcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
2875795 |
tagtggatgatggtgaaatatattaatgtaacctggttaccttctgaaatcttttagaagctcttgcatattcagcagcataaactaatgctacaccttc |
2875894 |
T |
|
| Q |
201 |
ttgtcgcttcttaagagcagcttgtatcttctcttcagtgttcatgtctgatacctccttagcctatagcaaacaatgaaccaaggtataaatgcataaa |
300 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
2875895 |
ttgtcgcttctcaagagcagcttctatcttctcttcggtgttcatgtccgatacctccttagcctaaagtaaacaatgaaccaaggtataaatgcataaa |
2875994 |
T |
|
| Q |
301 |
gaaagttgcaatggtatccaaccaataattatatgagagacagaagt |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2875995 |
gaaagttgcaatggtatccaaccaataattatttgagagacagaagt |
2876041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 136 - 345
Target Start/End: Original strand, 2890310 - 2890519
Alignment:
| Q |
136 |
attaccttctgatatcttttagaagctcttgcatattcagcagcatactctaatgctatggcttcttgtcgcttcttaagagcagcttgtatcttctctt |
235 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| ||||| | ||||||||| ||||||||||| |
|
|
| T |
2890310 |
attaccttctgaaatcttttagaagctcttgcatattcagcagcataaactaatgctaggccttcttgtcacttctcacgagcagcttctatcttctctt |
2890409 |
T |
|
| Q |
236 |
cagtgttcatgtctgatacctccttagcctatagcaaacaatgaaccaaggtataaatgcataaagaaagttgcaatggtatccaaccaataattatatg |
335 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
2890410 |
cagtgttcatgtccgatacctccttagcctaaagcaaacaatgaaccaaggtataaatgcataaagaaagttgcaatggtatccaaccattaattatttg |
2890509 |
T |
|
| Q |
336 |
agagacagaa |
345 |
Q |
| |
|
|||||||||| |
|
|
| T |
2890510 |
agagacagaa |
2890519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2890049 - 2890150
Alignment:
| Q |
1 |
ttccttcccctcatgcactcctagatgttgggcttatgcagatttgtcctaatgcttagctcaccacgtggaccataggcttaagtgccctataacattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
2890049 |
ttccttcccctcatgcactcctagatgttgggcttatgcagatttgtcctaatgcttagctcacca-atggaccataggcttaagtgacctatcgcattg |
2890147 |
T |
|
| Q |
101 |
tag |
103 |
Q |
| |
|
||| |
|
|
| T |
2890148 |
tag |
2890150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 39188269 - 39188344
Alignment:
| Q |
99 |
tgtagtggatgatggtgaaatatattaatgtaacatgattaccttctgatatcttttagaagctcttgcatattca |
174 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||| || ||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
39188269 |
tgtagtggatgagggtgaaatatatcaatgtaacttggttaccttctcaaatcttttagaagctcttgcatattca |
39188344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 4416130 - 4416030
Alignment:
| Q |
70 |
ggaccataggcttaagtgccctataacattgtagtggatgatggtgaaatatattaatgtaacatga-ttaccttctgatatcttttagaagctcttgca |
168 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||||| |||||||||||| |||||||| | | |||||||| | ||||||||||||| |||||| |
|
|
| T |
4416130 |
ggaccataggctcaagtgtcctatcacattgtagtggatgagggtgaaatatatcaatgtaacctcagttaccttcataaatcttttagaagcccttgca |
4416031 |
T |
|
| Q |
169 |
t |
169 |
Q |
| |
|
| |
|
|
| T |
4416030 |
t |
4416030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 2882206 - 2882322
Alignment:
| Q |
206 |
gcttcttaagagcagcttgtatcttctcttcagtgttcatgtctgatacctccttagcctatagcaaacaatgaaccaaggtataaatgcataaagaaag |
305 |
Q |
| |
|
|||||||| || |||||| ||| ||||||||| |||||||||| | ||||| |||| |||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
2882206 |
gcttcttacgaacagcttctattttctcttcattgttcatgtcctcgaaatccttttcctaaagcaaaaattgaaccaacgtataaatgcataaagaaag |
2882305 |
T |
|
| Q |
306 |
ttgcaatggtatccaac |
322 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
2882306 |
tcgcaatggtatccaac |
2882322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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