View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18316_high_7 (Length: 263)
Name: NF18316_high_7
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18316_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 35036587 - 35036360
Alignment:
| Q |
19 |
ctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttggtgccggcaggtttcttgttgcgtttgtgttgatcgagccaaacttg |
118 |
Q |
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| T |
35036587 |
ctatatcttgatcatcaacggttgaaaggagcacatccatgaagtcaagtttggtgccggcaggtttcttgttgcgtttgtgttgatcgagccaaacttg |
35036488 |
T |
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| Q |
119 |
aacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaaccatctcaaaaaccgcaacatgtcagatataacaaat |
218 |
Q |
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| T |
35036487 |
aacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaaccatctaaaaaaccgcaacatgtcagatataacaaat |
35036388 |
T |
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| Q |
219 |
gaaccgctgagatcgaaaaagtccctaa |
246 |
Q |
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| T |
35036387 |
gaaccgctgagatcgaaaaagtccctaa |
35036360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 94 - 248
Target Start/End: Complemental strand, 35020313 - 35020159
Alignment:
| Q |
94 |
gtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaaccatctcaaaaa |
193 |
Q |
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||||||| ||||| |||||||| |||||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
35020313 |
gtttgtgctgatcaagccaaacacaaacaaagtcatctaactcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaaata |
35020214 |
T |
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| Q |
194 |
ccgcaacatgtcagatataacaaatgaaccgctgagatcgaaaaagtccctaatc |
248 |
Q |
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| T |
35020213 |
cggtaacatgtcagaaacaacaaatgaaccactaagattaaaaaaatctctaatc |
35020159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 35044644 - 35044514
Alignment:
| Q |
93 |
cgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaaccatctcaaaa |
192 |
Q |
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|||||||||||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| |||| |
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| T |
35044644 |
cgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaa |
35044545 |
T |
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| Q |
193 |
accgcaacatgtcagatataacaaatgaacc |
223 |
Q |
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|| ||||| |||||||||||||| ||||| |
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| T |
35044544 |
acggcaacgaatcagatataacaaaggaacc |
35044514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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