View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18316_low_11 (Length: 251)

Name: NF18316_low_11
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18316_low_11
NF18316_low_11
[»] chr7 (2 HSPs)
chr7 (5-235)||(42883641-42883871)
chr7 (153-215)||(38273700-38273760)
[»] scaffold0736 (1 HSPs)
scaffold0736 (5-233)||(6452-6680)
[»] chr4 (2 HSPs)
chr4 (7-232)||(39182151-39182378)
chr4 (63-200)||(11895990-11896127)
[»] chr8 (4 HSPs)
chr8 (7-225)||(2077778-2077996)
chr8 (123-222)||(26722743-26722846)
chr8 (159-232)||(38985349-38985422)
chr8 (159-232)||(39016446-39016519)
[»] chr3 (1 HSPs)
chr3 (7-233)||(45481580-45481806)
[»] chr1 (3 HSPs)
chr1 (19-224)||(40099595-40099799)
chr1 (15-216)||(40875247-40875448)
chr1 (63-136)||(6468662-6468735)
[»] chr5 (1 HSPs)
chr5 (5-233)||(1189053-1189281)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 42883871 - 42883641
Alignment:
Q  5 atgaaattgcaattttaatgggagtgttcctactttgactcggcgcatctgtgagtttaaaaatatgaattggcatgttcgaattaaccatacttagcgt 104  Q
    |||||||| ||||||||||||||||| |||||| |||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  42883871 atgaaattacaattttaatgggagtgctcctaccttgacttggcgcatttgtgagtttaaaaacatgaattggcatgttcaaattaaccatacttagcgt 42883772  T
Q  105 gaaggtaatagagcagctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaata 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  42883771 gaaggtaatagagcagctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctccaagggagcttcaaaata 42883672  T
Q  205 ttctctttgatgacagatccgacgcttgcgt 235  Q
    ||||||||||||||| |||||||||||||||    
T  42883671 ttctctttgatgacaaatccgacgcttgcgt 42883641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 38273700 - 38273760
Alignment:
Q  153 aacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaatattctctttgat 215  Q
    |||||||||||||  ||||||||||||||||||||   ||||||||||||||| |||||||||    
T  38273700 aacgcttttgattcacatgtaatggagactcctct--aggagcttcaaaatatcctctttgat 38273760  T

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Target: scaffold0736 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: scaffold0736
Description:

Target: scaffold0736; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 6452 - 6680
Alignment:
Q  5 atgaaattgcaattttaatgggagtgttcctactttgactcggcgcatctgtgagtttaaaaatatgaattggcatgttcgaattaaccatacttagcgt 104  Q
    ||||||||||||| |||||||||||| |||||| |||| |||||||||| ||||||||||| | |||||||||||||||  |||||||||||||| ||||    
T  6452 atgaaattgcaatattaatgggagtgctcctaccttgattcggcgcatccgtgagtttaaagacatgaattggcatgtttaaattaaccatacttggcgt 6551  T
Q  105 gaaggtaatagagcagctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaata 204  Q
    ||||| ||||||||||| ||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  6552 gaaggcaatagagcagccgattggttagctaactttagtttaactttgaacgcttttgacttccatgtaatggagactcctccgagggagcttcaaaata 6651  T
Q  205 ttctctttgatgacagatccgacgcttgc 233  Q
    ||||||||||||||||||||| |||||||    
T  6652 ttctctttgatgacagatccggcgcttgc 6680  T

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Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 39182151 - 39182378
Alignment:
Q  7 gaaattgcaattttaatgggagtgt--tcctactttgactcggcgcatctgtgagtttaaaaatatgaattggcatgttcgaattaaccatacttagcgt 104  Q
    ||||||||||| |||||||||||||  |||||| |||| |||||||||| ||||||||||||| |||||||||||||||| |||||| ||||||| ||||    
T  39182151 gaaattgcaatattaatgggagtgtgctcctaccttgattcggcgcatccgtgagtttaaaaacatgaattggcatgttcaaattaaacatacttggcgt 39182250  T
Q  105 gaaggtaatagagcagctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaata 204  Q
     | || |||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39182251 cacggcaatagagcagctgattggttagttaacttcagtttaactttgcacgcttttgatttccatgtaatggagactcctccgagggagcttcaaaata 39182350  T
Q  205 ttctctttgatgacagatccgacgcttg 232  Q
    |||||||||||||||| |||| ||||||    
T  39182351 ttctctttgatgacaggtccgtcgcttg 39182378  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 11896127 - 11895990
Alignment:
Q  63 aaaaatatgaattggcatgttcgaattaaccatacttagcgtgaaggtaatagagcagctgattggttagctaacttcaatttaactttgaacgcttttg 162  Q
    ||||| |||| |||||||||||  || |||||||| | ||||||||| |||||| |||| |||||| ||||||| || | | || ||||| |||| ||||    
T  11896127 aaaaacatgagttggcatgttcatatcaaccatacatggcgtgaaggaaatagatcagcagattggctagctaattttagtctatctttggacgcctttg 11896028  T
Q  163 atttccatgtaatggagactcctctgagggagcttcaa 200  Q
    || | ||  | || ||||||||||| || |||||||||    
T  11896027 atctacacatgattgagactcctcttagagagcttcaa 11895990  T

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Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 2077778 - 2077996
Alignment:
Q  7 gaaattgcaattttaatgggagtgttcctactttgactcggcgcatctgtgagtttaaaaatatgaattggcatgttcgaattaaccatacttagcgtga 106  Q
    ||||||||||| |||||||||||  |||||| |||| |||||||||| ||||||||||| | |||||||||||||||  |||||| ||||||| |||| |    
T  2077778 gaaattgcaatattaatgggagttctcctaccttgattcggcgcatccgtgagtttaaagacatgaattggcatgtttaaattaatcatacttggcgtta 2077877  T
Q  107 aggtaatagagcagctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaatatt 206  Q
    ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2077878 aggcaatagaggagctgattggttagctaacttcagtttaactttgaacgcttttgatttccatgtaatggagactcctccgagggagcttcaaaatatt 2077977  T
Q  207 ctctttgatgacagatccg 225  Q
    || |||||||||| |||||    
T  2077978 ctatttgatgacaaatccg 2077996  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 222
Target Start/End: Original strand, 26722743 - 26722846
Alignment:
Q  123 gattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctc----tgagggagcttcaaaatattctctttgatgac 218  Q
    ||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||||||      | ||| |||||||||||||||||||| |||    
T  26722743 gattggttagctaactttagtttacctttaaacgcttttgatttccatgtaatggagactcctcctatatatggaacttcaaaatattctctttgaagac 26722842  T
Q  219 agat 222  Q
    ||||    
T  26722843 agat 26722846  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 38985422 - 38985349
Alignment:
Q  159 tttgatttccatgtaatggagactcctctgagggagcttcaaaatattctctttgatgacagatccgacgcttg 232  Q
    |||||||| |||||||| ||||||||||  ||||||||| |||||||||||||||||||||||| |||||||||    
T  38985422 tttgattttcatgtaatagagactcctcctagggagctttaaaatattctctttgatgacagatacgacgcttg 38985349  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 39016519 - 39016446
Alignment:
Q  159 tttgatttccatgtaatggagactcctctgagggagcttcaaaatattctctttgatgacagatccgacgcttg 232  Q
    |||||||| |||||||| ||||||||||  ||||||||| |||||||||||||||||||||||| |||||||||    
T  39016519 tttgattttcatgtaatagagactcctcctagggagctttaaaatattctctttgatgacagatacgacgcttg 39016446  T

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Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 233
Target Start/End: Original strand, 45481580 - 45481806
Alignment:
Q  7 gaaattgcaattttaatgggagtgttcctactttgactcggcgcatctgtgagtttaaaaatatgaattggcatgttcgaattaaccatacttagcgtga 106  Q
    ||||||||||| |||||||||||| |||||| |||  |||||||||| ||||||||||| | |||||||||||||||  |||||| |||||||  |||||    
T  45481580 gaaattgcaatattaatgggagtgctcctaccttggttcggcgcatccgtgagtttaaagacatgaattggcatgtttaaattaatcatacttgacgtga 45481679  T
Q  107 aggtaatagagcagctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaatatt 206  Q
    ||| ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  45481680 aggcaatagagcagccgattggttagctaactttagtttaactttgaacgcttttgatttccatgtaatggagactcctccgagagagcttcaaaatatt 45481779  T
Q  207 ctctttgatgacagatccgacgcttgc 233  Q
    |||||||||||||||| || |||||||    
T  45481780 ctctttgatgacagattcggcgcttgc 45481806  T

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Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 40099595 - 40099799
Alignment:
Q  19 ttaatgggagtgttcctactttgactcggcgcatctgtgagtttaaaaatatgaattggcatgttcgaattaaccatacttagcgtgaaggtaatagagc 118  Q
    |||||||||||| |||||| |||| || ||| ||||||||||||||||| |||||||| ||||| |||||||||||||||  ||||||||| ||||||||    
T  40099595 ttaatgggagtgctcctaccttgattcagcgtatctgtgagtttaaaaacatgaattgacatgtgcgaattaaccatactg-gcgtgaaggcaatagagc 40099693  T
Q  119 agctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaatattctctttgatgac 218  Q
    |||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  40099694 agctgattggttagttgacttcaatttaactttgaacacttttgatttccatgtaatggagactcctccgagggagcttcaaaataatctctttgatgac 40099793  T
Q  219 agatcc 224  Q
    ||||||    
T  40099794 agatcc 40099799  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 40875448 - 40875247
Alignment:
Q  15 aattttaatgggagtgttcctactttgactcggcgcatctgtgagtttaaaaatatgaattggcatgttcgaattaaccatacttagcgtgaaggtaata 114  Q
    ||||||||||||||||||||||| |||| | |  |||| ||||||||||||||  | ||||||||||| | |||||| | ||||| ||||||||  ||||    
T  40875448 aattttaatgggagtgttcctaccttgatttgatgcatatgtgagtttaaaaactttaattggcatgtgcaaattaatcgtacttggcgtgaagacaata 40875349  T
Q  115 gagcagctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaatattctctttga 214  Q
    |||| ||||||||||||| |||||| | || ||||||||| | |||||||||| |||||||||||||| |||  || |||||||||||||||||||||||    
T  40875348 gagccgctgattggttagttaactttagttaaactttgaaggtttttgatttctatgtaatggagacttctcctagagagcttcaaaatattctctttga 40875249  T
Q  215 tg 216  Q
    ||    
T  40875248 tg 40875247  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 6468735 - 6468662
Alignment:
Q  63 aaaaatatgaattggcatgttcgaattaaccatacttagcgtgaaggtaatagagcagctgattggttagctaa 136  Q
    |||||||||| |||||||||||  || |||||||| ||||||||||| || | | |||| |||||| |||||||    
T  6468735 aaaaatatgagttggcatgttcatatcaaccatacatagcgtgaaggaaacaaatcagcagattggctagctaa 6468662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 1189053 - 1189281
Alignment:
Q  5 atgaaattgcaattttaatgggagtgttcctactttgactcggcgcatctgtgagtttaaaaatatgaattggcatgttcgaattaaccatacttagcgt 104  Q
    ||||||||||||| ||||||||||||||||||| || | || |||||||  ||||||| |||| |||||||||||||| | ||||||||||||||  |||    
T  1189053 atgaaattgcaatattaatgggagtgttcctacatttattcagcgcatccatgagtttgaaaacatgaattggcatgtgcaaattaaccatacttgacgt 1189152  T
Q  105 gaaggtaatagagcagctgattggttagctaacttcaatttaactttgaacgcttttgatttccatgtaatggagactcctctgagggagcttcaaaata 204  Q
    ||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| |||| |||||  |||||||||||||||||  ||||||||||||||||    
T  1189153 gaaggcaatagagtagctgattgattagctaactttaatttaactttgaacgttttttatttctgtgtaatggagactcctcatagggagcttcaaaata 1189252  T
Q  205 ttctctttgatgacagatccgacgcttgc 233  Q
    |||||||||||| || || |||| |||||    
T  1189253 ttctctttgatgtcatattcgacacttgc 1189281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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