View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18316_low_12 (Length: 250)
Name: NF18316_low_12
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18316_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 15801898 - 15802119
Alignment:
| Q |
19 |
catgatggtgttacaataacttttcctgtcgtattctggttagtgtaacccatgacgcatacatcataccatatcaaagccgaaacactgttaggacaac |
118 |
Q |
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| T |
15801898 |
catgatggtgttacaataacttttcctgtcgtattctggtttgtgtaacccatgacgcatacatcataccatatcaaagccgaaacactgttaggacaac |
15801997 |
T |
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| Q |
119 |
gttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatc |
218 |
Q |
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| T |
15801998 |
gttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatc |
15802097 |
T |
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| Q |
219 |
atcgctgttgttgctacctatg |
240 |
Q |
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| T |
15802098 |
atcgctgttgttgctacctatg |
15802119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 15794099 - 15794320
Alignment:
| Q |
19 |
catgatggtgttacaataacttttcctgtcgtattctggttagtgtaacccatgacgcatacatcataccatatcaaagccgaaacactgttaggacaac |
118 |
Q |
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| T |
15794099 |
catgatggagttacaataactcttcccgagggattctggttagtgtaacccatgatgcataaatcataccatatcatagctgagacactgttgggacaat |
15794198 |
T |
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| Q |
119 |
gttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatc |
218 |
Q |
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| T |
15794199 |
attttgcaatatctctaacaacagtgttgatacaaaattgacagaaacttcctgtgatgtcaccccgacaatcatagaacccataaaccgtatcatgatc |
15794298 |
T |
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| Q |
219 |
atcgctgttgttgctacctatg |
240 |
Q |
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| T |
15794299 |
attgttgttgttgctaactatg |
15794320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 240
Target Start/End: Original strand, 15807549 - 15807738
Alignment:
| Q |
51 |
attctggttagtgtaacccatgacgcatacatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaacagcagtgttgata |
150 |
Q |
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| T |
15807549 |
attctggttagtataacccatgatgcatacatcataccatataatagccgagacactgttgggacaatattttgcaatttctctaaaagcagtgttgatg |
15807648 |
T |
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| Q |
151 |
cagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccataaacattgtcatgatcatcgctgttgttgctacctatg |
240 |
Q |
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| T |
15807649 |
caaaattgacagaaacttcttgtgttaggacctagacaatcatagaacccataaaccgtatcattataattgctgttgttgctacctatg |
15807738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 15815398 - 15815562
Alignment:
| Q |
39 |
ttttcctgtcgtattctggttagtgtaacccatgacgcatacatcataccatatcaaagccgaaacactgttaggacaacgttgagcgatttctctaaca |
138 |
Q |
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| T |
15815398 |
ttttcctgatgtattatggtcagaataaccgatgacacatatgtcataccatatcatagccgagacgccattgggacaacattgagcgatcgctctaaca |
15815497 |
T |
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| Q |
139 |
gcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaaccgtataacccata |
203 |
Q |
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| T |
15815498 |
gcagcgttgatacaaaattgacagaaacttcctgttacgtcaccacgacaatcgtagaatccata |
15815562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 15700230 - 15700313
Alignment:
| Q |
106 |
ctgttaggacaacgttgagcgatttctctaacagcagtgttgatacagaatcggcagaaacttcctgtgatgtcacctcgacaa |
189 |
Q |
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| T |
15700230 |
ctgttaagacaacgttgagcaatttctttgacagcagtgttgatacaaaattgacagaaacttcctgtgacgtcagcccgacaa |
15700313 |
T |
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