View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18316_low_2 (Length: 457)
Name: NF18316_low_2
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18316_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 32853782 - 32853463
Alignment:
| Q |
16 |
acattttctccaacgcatcatcaaatccaatatctgaattctgaaacttccattcccttttgaagtgagagaaaatgggaagaatctttgtggttgagct |
115 |
Q |
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| T |
32853782 |
acattttctccaacgcatcatcaaattcaatatctgaattctgaaacttccattcccttttgaagtgagagaaaatgggaagaatctttgtggttgagct |
32853683 |
T |
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| Q |
116 |
ggagggcaggttctatagatgcaaattctgcagaactcatttggcccttgctgatgatctcatttctcgggtatgtaccctttactttttatactttcac |
215 |
Q |
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| T |
32853682 |
ggagggcaggtcctatagatgcaaattctgcagaactcatttggcccttgctgatgatctcatttctcgggtatgtaccctttactttttatactttcac |
32853583 |
T |
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| Q |
216 |
taatgcttttttattttcttaaataaattcttgttgaagtaactgtttgtgaaacattcttgaatgtagaagaataagaacacattcaattatgacatta |
315 |
Q |
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| T |
32853582 |
taatgcttttttattttcttaaataaattcttgttgaagtaactgtttgtgaaacattcttgaat---gaagaataagaatacattcaattatgacatta |
32853486 |
T |
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| Q |
316 |
tagctatctaatttgagagaata |
338 |
Q |
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| T |
32853485 |
tagttatctattttgagagaata |
32853463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 32853287 - 32853223
Alignment:
| Q |
379 |
catgtgttggtttgtcaagtgcgagtaaaggagtctcacattggatgtgagtgttggacaatttg |
443 |
Q |
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| T |
32853287 |
catgtgttggtttgtcaagtgcgagtaaaggagtctcccattggatgtgagtgttggacaatttg |
32853223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 375
Target Start/End: Complemental strand, 32853424 - 32853384
Alignment:
| Q |
336 |
atattgttaatctcac-aaccaccctgtgatctgtagtagt |
375 |
Q |
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| T |
32853424 |
atattgttaatctcaccaaccaccctgtgatctgtagtagt |
32853384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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