View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18316_low_4 (Length: 386)
Name: NF18316_low_4
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18316_low_4 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 22 - 386
Target Start/End: Original strand, 9194074 - 9194438
Alignment:
| Q |
22 |
tgtggcaaacaacaaaagatgaaaaaggtaaacctttctcatcttggggtgaaggctattttcaaggaaccaaagaaacaacaacttcaaacaaagatgc |
121 |
Q |
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| T |
9194074 |
tgtggcaaacaacaaaagatgaaaaaggtaaacctttcttatcttggggtgaaggctattttcaaggaaccaaagaaacaacaacttcaaacaaagatgc |
9194173 |
T |
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| Q |
122 |
tgaatggttctatgtgatgtcgttgactcggattttttccataggtaatgcttcttcaatttcattacctggtaaagcttttgctttagattctgttctt |
221 |
Q |
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| T |
9194174 |
tgaatggttctacgtgatgtcgttaactcgaaaattttccataggtaatgcttcttcaatttcattacctggtaaagcttttgctttagattctgttctt |
9194273 |
T |
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| Q |
222 |
tggttgaatagtaaacatgaacttcaaatctataactgtgaaagatccaatgaagcacacgtgcatggaattgaaacattgatttgtattccgacaacta |
321 |
Q |
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| T |
9194274 |
tggttgaatagtaaacatgaacttcaaatctataattgtgagagatccaatgaagcacacatgcatggaatcgaaacactgatttgtattccgacaacta |
9194373 |
T |
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| Q |
322 |
acggtgtaatcgaaatgggttcttacgataatatccaacaaaattggaacctagtacaccaagct |
386 |
Q |
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| T |
9194374 |
acggtgtaatcgaaatgggttcttatgacaatatccaacaaaattggaacctcgtgcaccaagct |
9194438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 109 - 386
Target Start/End: Complemental strand, 9213866 - 9213589
Alignment:
| Q |
109 |
caaacaaagatgctgaatggttctatgtgatgtcgttgactcggattttttccataggtaatgcttcttcaatttcattacctggtaaagcttttgcttt |
208 |
Q |
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| T |
9213866 |
caaacaaagatgctgaatggttctatgtgatgtcgttgactcggattttttccataggtaatgcttcttcaatttcattacctggtaaatcttttgcttt |
9213767 |
T |
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| Q |
209 |
agattctgttctttggttgaatagtaaacatgaacttcaaatctataactgtgaaagatccaatgaagcacacgtgcatggaattgaaacattgatttgt |
308 |
Q |
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| T |
9213766 |
agattctgttctttggttgaatagtaaacatgaactgcaaatctataactgtgaaagatccaatgaagcacacgtgcatggaattgaaacattgatttgt |
9213667 |
T |
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| Q |
309 |
attccgacaactaacggtgtaatcgaaatgggttcttacgataatatccaacaaaattggaacctagtacaccaagct |
386 |
Q |
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| T |
9213666 |
attccgacaactaacggtgtaatcgaaatgggttcttacgataatatccaacaaaattggaacctagtacaccaagct |
9213589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 9213981 - 9213889
Alignment:
| Q |
24 |
tggcaaacaacaaaagatgaaaaaggtaaacctttctcatcttggggtgaaggctattttcaaggaaccaaagaaacaacaacttcaaacaaa |
116 |
Q |
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| T |
9213981 |
tggcaaacaacaaaagatgaaaaaggtaaacctctcttatcttggggtgaaggctattttcaaggaaccaaagaaacaacaaattcaaacaaa |
9213889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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