View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18316_low_6 (Length: 346)

Name: NF18316_low_6
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18316_low_6
NF18316_low_6
[»] chr2 (37 HSPs)
chr2 (18-165)||(1810589-1810736)
chr2 (205-344)||(1810740-1810879)
chr2 (69-182)||(33941884-33941998)
chr2 (75-173)||(10563548-10563647)
chr2 (101-185)||(33256748-33256832)
chr2 (74-179)||(680483-680589)
chr2 (124-185)||(787363-787424)
chr2 (129-186)||(1494423-1494480)
chr2 (68-186)||(1625874-1625994)
chr2 (97-145)||(43985021-43985069)
chr2 (72-148)||(45229490-45229566)
chr2 (68-154)||(41851509-41851596)
chr2 (69-185)||(26626848-26626966)
chr2 (100-145)||(3067397-3067442)
chr2 (131-184)||(5902528-5902581)
chr2 (126-179)||(9595291-9595344)
chr2 (100-185)||(35378994-35379079)
chr2 (70-154)||(40279173-40279258)
chr2 (102-182)||(26857091-26857171)
chr2 (97-185)||(43065428-43065516)
chr2 (75-145)||(656795-656866)
chr2 (121-184)||(1647264-1647327)
chr2 (68-154)||(3611200-3611287)
chr2 (107-185)||(43570428-43570506)
chr2 (97-186)||(43279505-43279595)
chr2 (126-184)||(44606089-44606147)
chr2 (129-186)||(4350726-4350783)
chr2 (100-185)||(8017441-8017526)
chr2 (107-184)||(33192216-33192293)
chr2 (108-185)||(35378510-35378587)
chr2 (102-154)||(1056362-1056414)
chr2 (114-162)||(3235385-3235433)
chr2 (97-145)||(6988119-6988167)
chr2 (126-185)||(13325603-13325663)
chr2 (68-182)||(18066102-18066218)
chr2 (97-157)||(40279411-40279471)
chr2 (121-185)||(43529836-43529900)
[»] chr4 (25 HSPs)
chr4 (75-186)||(2996554-2996666)
chr4 (97-165)||(6978960-6979028)
chr4 (68-186)||(28300276-28300395)
chr4 (68-145)||(17884042-17884120)
chr4 (68-184)||(41336734-41336852)
chr4 (97-185)||(21731633-21731722)
chr4 (68-145)||(47800604-47800675)
chr4 (68-145)||(51630085-51630163)
chr4 (97-185)||(17822842-17822931)
chr4 (100-145)||(18011878-18011923)
chr4 (97-146)||(30668383-30668432)
chr4 (97-165)||(11264305-11264373)
chr4 (100-175)||(23819096-23819171)
chr4 (66-140)||(29778767-29778842)
chr4 (114-176)||(44249306-44249368)
chr4 (68-137)||(56480322-56480392)
chr4 (70-184)||(679692-679809)
chr4 (114-154)||(51210463-51210504)
chr4 (65-148)||(437259-437343)
chr4 (114-154)||(1312862-1312902)
chr4 (129-181)||(7205800-7205852)
chr4 (97-165)||(19250550-19250618)
chr4 (121-165)||(29467622-29467666)
chr4 (101-145)||(32421277-32421321)
chr4 (97-153)||(50400491-50400547)
[»] chr5 (30 HSPs)
chr5 (70-145)||(10272449-10272525)
chr5 (100-186)||(13604826-13604912)
chr5 (72-184)||(16937861-16937975)
chr5 (69-184)||(2568632-2568749)
chr5 (100-185)||(17258861-17258946)
chr5 (97-186)||(17368680-17368769)
chr5 (70-185)||(39105440-39105557)
chr5 (97-165)||(5284446-5284514)
chr5 (100-180)||(21768180-21768260)
chr5 (121-186)||(4659210-4659275)
chr5 (81-145)||(36318761-36318826)
chr5 (97-165)||(2468435-2468503)
chr5 (97-176)||(32703263-32703342)
chr5 (99-186)||(37611192-37611279)
chr5 (99-186)||(37787922-37788009)
chr5 (68-181)||(1619064-1619177)
chr5 (121-179)||(11700362-11700420)
chr5 (73-185)||(16457956-16458070)
chr5 (100-186)||(36639529-36639615)
chr5 (76-184)||(6587086-6587195)
chr5 (81-145)||(7907868-7907933)
chr5 (121-174)||(14331395-14331448)
chr5 (121-185)||(499709-499773)
chr5 (97-145)||(2880565-2880613)
chr5 (100-184)||(7674655-7674739)
chr5 (102-154)||(7984978-7985030)
chr5 (114-186)||(8089957-8090029)
chr5 (97-185)||(17827528-17827616)
chr5 (74-145)||(35445861-35445933)
chr5 (97-173)||(40205064-40205140)
[»] chr3 (28 HSPs)
chr3 (97-188)||(39980733-39980825)
chr3 (68-185)||(21367641-21367760)
chr3 (66-185)||(402519-402640)
chr3 (106-182)||(23808045-23808121)
chr3 (97-145)||(36887508-36887556)
chr3 (133-180)||(24624250-24624297)
chr3 (121-188)||(53952076-53952143)
chr3 (68-165)||(52618977-52619075)
chr3 (68-148)||(35959471-35959552)
chr3 (114-175)||(36139899-36139960)
chr3 (72-184)||(45541549-45541662)
chr3 (73-153)||(47132310-47132391)
chr3 (126-182)||(5391912-5391968)
chr3 (126-186)||(47132027-47132087)
chr3 (77-184)||(54837013-54837121)
chr3 (121-180)||(27290884-27290943)
chr3 (107-185)||(27896148-27896226)
chr3 (100-154)||(35394507-35394561)
chr3 (126-184)||(39723219-39723277)
chr3 (68-185)||(48286788-48286906)
chr3 (99-156)||(901930-901987)
chr3 (100-185)||(20502046-20502131)
chr3 (100-185)||(30573892-30573977)
chr3 (100-157)||(33972740-33972797)
chr3 (118-175)||(36101593-36101650)
chr3 (68-148)||(36631066-36631147)
chr3 (68-180)||(39602193-39602305)
chr3 (102-178)||(16790364-16790439)
[»] chr1 (42 HSPs)
chr1 (100-186)||(37811859-37811945)
chr1 (74-145)||(43332464-43332536)
chr1 (68-154)||(27820346-27820433)
chr1 (87-183)||(35925686-35925780)
chr1 (74-154)||(51695504-51695585)
chr1 (106-186)||(28689429-28689509)
chr1 (70-184)||(1565514-1565629)
chr1 (121-180)||(11639399-11639458)
chr1 (72-185)||(17603361-17603476)
chr1 (97-184)||(37842334-37842421)
chr1 (70-151)||(7472287-7472369)
chr1 (97-190)||(38503437-38503531)
chr1 (96-145)||(3924627-3924676)
chr1 (115-184)||(7575678-7575746)
chr1 (106-179)||(19092368-19092440)
chr1 (100-173)||(27140485-27140558)
chr1 (121-185)||(10439714-10439778)
chr1 (72-185)||(3233992-3234107)
chr1 (99-154)||(27820205-27820260)
chr1 (107-182)||(37593665-37593740)
chr1 (121-184)||(43338144-43338207)
chr1 (102-185)||(44422708-44422791)
chr1 (102-157)||(52286687-52286742)
chr1 (100-174)||(4202140-4202214)
chr1 (70-147)||(6556947-6557025)
chr1 (126-184)||(29723522-29723580)
chr1 (115-185)||(31517718-31517788)
chr1 (68-145)||(34290210-34290288)
chr1 (97-147)||(37769676-37769726)
chr1 (100-154)||(45975697-45975751)
chr1 (121-174)||(6292521-6292574)
chr1 (108-185)||(10280664-10280741)
chr1 (103-148)||(47432105-47432150)
chr1 (114-182)||(4768810-4768878)
chr1 (100-184)||(7136977-7137061)
chr1 (121-185)||(10199386-10199450)
chr1 (97-145)||(26779943-26779991)
chr1 (117-173)||(30815643-30815699)
chr1 (121-157)||(33975598-33975634)
chr1 (125-185)||(35669004-35669064)
chr1 (117-185)||(38170668-38170736)
chr1 (105-145)||(51190860-51190900)
[»] chr7 (22 HSPs)
chr7 (68-148)||(17944358-17944439)
chr7 (72-185)||(19302540-19302651)
chr7 (68-180)||(12110334-12110447)
chr7 (134-187)||(19719047-19719100)
chr7 (102-150)||(12792576-12792624)
chr7 (108-180)||(27626106-27626178)
chr7 (99-182)||(25670567-25670650)
chr7 (133-179)||(12834946-12834992)
chr7 (99-185)||(28691813-28691899)
chr7 (123-185)||(33894657-33894719)
chr7 (126-184)||(43219623-43219681)
chr7 (126-180)||(44808191-44808245)
chr7 (97-179)||(46104551-46104633)
chr7 (129-186)||(13960700-13960757)
chr7 (97-185)||(19214383-19214472)
chr7 (69-145)||(28613552-28613629)
chr7 (68-148)||(46280287-46280368)
chr7 (100-184)||(9050642-9050725)
chr7 (69-148)||(20269551-20269631)
chr7 (97-165)||(44151478-44151546)
chr7 (121-185)||(46082064-46082128)
chr7 (97-141)||(48917368-48917412)
[»] chr6 (21 HSPs)
chr6 (70-185)||(20368158-20368274)
chr6 (100-184)||(31624097-31624181)
chr6 (75-154)||(34430470-34430550)
chr6 (118-176)||(11600861-11600919)
chr6 (107-173)||(34939758-34939824)
chr6 (100-157)||(27894053-27894110)
chr6 (97-145)||(5564146-5564194)
chr6 (126-186)||(32171360-32171420)
chr6 (132-183)||(283134-283185)
chr6 (76-154)||(6536597-6536676)
chr6 (103-186)||(34538195-34538278)
chr6 (121-180)||(34544127-34544186)
chr6 (126-184)||(696635-696693)
chr6 (120-186)||(725632-725698)
chr6 (69-153)||(13907822-13907907)
chr6 (69-145)||(26694853-26694930)
chr6 (68-182)||(2735043-2735159)
chr6 (68-143)||(6909892-6909968)
chr6 (97-145)||(13907589-13907637)
chr6 (106-186)||(32577963-32578043)
chr6 (125-185)||(34404703-34404763)
[»] chr8 (18 HSPs)
chr8 (121-185)||(13459673-13459737)
chr8 (107-179)||(42370345-42370417)
chr8 (68-185)||(38648325-38648444)
chr8 (100-165)||(20672757-20672822)
chr8 (70-154)||(27028807-27028892)
chr8 (118-186)||(29168642-29168711)
chr8 (97-145)||(4762513-4762561)
chr8 (121-185)||(8066748-8066812)
chr8 (68-179)||(11415128-11415240)
chr8 (100-188)||(11569432-11569520)
chr8 (106-157)||(39866740-39866791)
chr8 (102-144)||(11494155-11494197)
chr8 (100-186)||(29169075-29169160)
chr8 (97-171)||(34290873-34290947)
chr8 (103-184)||(3254235-3254316)
chr8 (97-185)||(26473730-26473818)
chr8 (114-154)||(31168035-31168075)
chr8 (121-185)||(42215284-42215348)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 1810589 - 1810736
Alignment:
Q  18 gctctttgggctcatgtatgtataagcgcttctgtataatctatttttattaaagttaaattgtttttgtataagttgtagttgtttttataagccatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  1810589 gctctttgggctcatgtatgtataagcgcttctgtataatctatttttattaaatttaaattgtttttgtataagttatagttgtttttataagctatct 1810688  T
Q  118 tgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  1810689 tgaagagtttatgaaaataagctgaaaaaagtttattgacctgtcata 1810736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 205 - 344
Target Start/End: Original strand, 1810740 - 1810879
Alignment:
Q  205 tccaaacagatcctaatttttaacataaacaaataagtagttgaactagaaaaagagagtgtaagcttgacttctatttttgttttggctgttggtagag 304  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1810740 tccatacagatcctaatttttaacataaacaaataagtagttgaactagaaaaagagagtgtaagcttgacttgtatttttgttttggctgttggtagag 1810839  T
Q  305 agttgtgttaagagatatggctgctgatgataagaataat 344  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1810840 agttgtgttaagagatatggctgctgatgataagaataat 1810879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 69 - 182
Target Start/End: Original strand, 33941884 - 33941998
Alignment:
Q  69 aaagttaaattgtttttgtataagttgtag-ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcatagg 167  Q
    ||||| |||||||||||||||||||| ||  ||||||| |||||| |||||| ||||||||||| |||||| |||||  || ||||| || ||||||| |    
T  33941884 aaagtaaaattgtttttgtataagttataacttgttttcataagctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataag 33941983  T
Q  168 ctgttttcataagtt 182  Q
     ||||||||||||||    
T  33941984 ttgttttcataagtt 33941998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 10563647 - 10563548
Alignment:
Q  75 aaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttt 173  Q
    ||||||||||| | |||||| || |||||||| |||||| ||  ||||||| ||| |||||||||||||||| || |||||||| |||||||||||||||    
T  10563647 aaattgtttttttgtaagttataagttgttttcataagctatgctgaagagcttaagaaaataagctgaaaatagcttatggacatgtcataggctgttt 10563548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 33256748 - 33256832
Alignment:
Q  101 gtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||| |||||||||| ||||||   |||||||||||||||| || |||||||| || ||||||| |||||||||||||| ||||    
T  33256748 gttttcataagccatcctgaagaccgtatgaaaataagctgagaacagtttatgaacatgtcataagctgttttcataagctctc 33256832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 680483 - 680589
Alignment:
Q  74 taaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgtt 172  Q
    ||||||||||| ||||||| | || | | |||| |||||| ||||||||||  || ||||||||||||||||| |||||||  || ||||||| ||||||    
T  680483 taaattgttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacagtttataaacatgtcataagctgtt 680582  T
Q  173 ttcataa 179  Q
    |||||||    
T  680583 ttcataa 680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 787363 - 787424
Alignment:
Q  124 gtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||||| | |||||||||||| || |||||||| ||||||| |||||||||||||||||||    
T  787363 gtttatggagataagctgaaaacagcttatggacatgtcataagctgttttcataagttctc 787424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 1494480 - 1494423
Alignment:
Q  129 tgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    |||||||||||| |||| ||||||||||| ||||||| |||||||||||||| |||||    
T  1494480 tgaaaataagctaaaaacagtttatggacatgtcataagctgttttcataagctctct 1494423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 1625874 - 1625994
Alignment:
Q  68 taaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac-ctgtcata 165  Q
    ||||||||||||||||| ||||||||| | ||||||||| |||||| |||||| |||  ||| |||||| ||||||||| |  ||||| ||  |||||||    
T  1625874 taaagttaaattgttttcgtataagttataagttgttttcataagctatcttggagaacttacgaaaatcagctgaaaacatcttatgaacattgtcata 1625973  T
Q  166 ggctgttttcataagttctct 186  Q
     |||  |||||||||||||||    
T  1625974 agctactttcataagttctct 1625994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 43985069 - 43985021
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  43985069 agttgttttcataagctatcttgaagagcttatgaaaataagctgaaaa 43985021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 45229490 - 45229566
Alignment:
Q  72 gttaaattgtttttgtataagttgtagttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaag 148  Q
    ||||||||||||||||||| ||| |  ||||||| |||||| |||||  |||  |||||||||||||||||||||||    
T  45229490 gttaaattgtttttgtatatgttatcattgttttcataagctatcttcgagaacttatgaaaataagctgaaaaaag 45229566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 41851509 - 41851596
Alignment:
Q  68 taaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    ||||||||||||||||||||||| | | | ||||||||| | |||| |||||| ||| ||||||||| |||||||| ||||| |||||    
T  41851509 taaagttaaattgtttttgtatatgctataagttgttttcagaagctatcttggagaatttatgaaattaagctgagaaaagcttatg 41851596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 26626848 - 26626966
Alignment:
Q  69 aaagttaaattgtttttgtataagtt-gtagttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac-ctgtcatag 166  Q
    |||||||||||||||| ||||||| | | || |||||| |||||| |||||| |||  |||||||||||| ||||||| || ||||| ||  |||||||     
T  26626848 aaagttaaattgttttcgtataagctagaagctgttttcataagctatcttgcagaacttatgaaaataacctgaaaacagattatgaacaatgtcataa 26626947  T
Q  167 gctgttttcataagttctc 185  Q
    ||| ||||| |||||||||    
T  26626948 gctattttcgtaagttctc 26626966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 3067442 - 3067397
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||||    
T  3067442 tgttttcataagctatcttgaagagtttatgaaaataagctaaaaa 3067397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 5902581 - 5902528
Alignment:
Q  131 aaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||| |||||||||| |||||||| || ||||||| ||||||||||||||||||    
T  5902581 aaaacaagctgaaaacagtttatgaacatgtcataagctgttttcataagttct 5902528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 9595291 - 9595344
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataa 179  Q
    |||||||||||||||||||| |||| |||||| ||||||| | |||||||||||    
T  9595291 ttatgaaaataagctgaaaatagttcatggacatgtcataagatgttttcataa 9595344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 35379079 - 35378994
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||| |||||| |||||| |||| |||||||||||||||||||| |  ||||| ||  |||||  |||||||||||||| ||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctctc 35378994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 40279173 - 40279258
Alignment:
Q  70 aagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    ||||||||||||||| ||||||| | | ||||||||| |||||| || ||| |||  |||||||||| ||||||||| ||||||||    
T  40279173 aagttaaattgttttggtataagatataagttgttttcataagctatgttggagaacttatgaaaattagctgaaaatagtttatg 40279258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 26857171 - 26857091
Alignment:
Q  102 tttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagtt 182  Q
    ||||| ||||| |||||| ||||||| || |||||||||||||| ||  | || |||||||||| | ||||||||||||||    
T  26857171 tttttgtaagctatcttggagagtttgtggaaataagctgaaaatagactctgaacctgtcataagttgttttcataagtt 26857091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 43065516 - 43065428
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||||||| |||||  ||| || |||| ||||  |||||||||||||| | ||||||||| ||||||| | |||||||||||| ||||    
T  43065516 agttgttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 145
Target Start/End: Complemental strand, 656866 - 656795
Alignment:
Q  75 aaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||| ||||||| |||| |||| ||| |||||| |||||| |||| ||||||||||||| ||||||    
T  656866 aaattgttttcgtataagctgtaagttgatttcataagctatcttgcagagcttatgaaaataagatgaaaa 656795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 1647264 - 1647327
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||| ||||| |||||||||||||| || |||||  | ||||||| ||||||||||||||||||    
T  1647264 agagcttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataagttct 1647327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 3611200 - 3611287
Alignment:
Q  68 taaagttaaattgtttttgtataagttgtag-ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||||||||||||||||||||||  || |||  |||||| | |||| |||||| |||  ||||||||||||||| |||| ||||||||    
T  3611200 taaagttaaattgtttttgtatagtttatagactgttttcacaagctatcttggagaacttatgaaaataagctaaaaacagtttatg 3611287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 43570428 - 43570506
Alignment:
Q  107 ataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacc-tgtcataggctgttttcataagttctc 185  Q
    |||||||||| || | || ||||||||||||||| ||||||| ||||| ||  ||||||| |||||||||||||||||||    
T  43570428 ataagccatcctggaaagcttatgaaaataagct-aaaaaagcttatgaacaatgtcataagctgttttcataagttctc 43570506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 43279595 - 43279505
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggctgttttcataagttctct 186  Q
    |||||||||||||||| || ||| |||  || |||||||||| ||||||||| |||||  |  ||||||| ||||||||||||| ||||||    
T  43279595 agttgtttttataagctatattggagaacttgtgaaaataagttgaaaaaagcttatgaaaattgtcataagctgttttcataaattctct 43279505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 44606147 - 44606089
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||||||| ||||||||| |  |||||||| ||||||| | ||||||||||||||||    
T  44606147 ttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataagttct 44606089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 4350726 - 4350783
Alignment:
Q  129 tgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||||| || |||  |||||||| || ||||||| ||||||||||||||||||||    
T  4350726 tgaaaataacctaaaatcagtttatgaacatgtcataagctgttttcataagttctct 4350783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 8017441 - 8017526
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||| |||||| |||||| |||  ||||||||||| || ||||| |  ||||| || | ||||| |||||||||||||||||||    
T  8017441 tgttttcataagctatcttggagaacttatgaaaatacgcagaaaacaaattatgaacatatcataagctgttttcataagttctc 8017526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 33192216 - 33192293
Alignment:
Q  107 ataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||| ||| || |||| |||| || |||||||||||| || |||||||  |||||||  |||||||||||||||||    
T  33192216 ataagctatcctggagagcttataaatataagctgaaaacagcttatggatatgtcataaactgttttcataagttct 33192293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 35378587 - 35378510
Alignment:
Q  108 taagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||| |||||| | || |||||||||||||||||||| |  ||||| ||  |||||  |||||||||||||||||||    
T  35378587 taagcaatcttggatagcttatgaaaataagctgaaaataacttatgaacaagtcatcagctgttttcataagttctc 35378510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 1056414 - 1056362
Alignment:
Q  102 tttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||| |||||| ||||||||||||||||  |||||||||||||| || |||||    
T  1056414 ttttcataagctatcttgaagagtttatagaaataagctgaaaatagattatg 1056362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 3235433 - 3235385
Alignment:
Q  114 atcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtc 162  Q
    |||||||| |||||||| |||||||||||||| || ||||| |||||||    
T  3235433 atcttgaaaagtttatggaaataagctgaaaacagcttatgaacctgtc 3235385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 6988119 - 6988167
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||| |||||| ||||||||||||||||  ||||||| ||||||    
T  6988119 agttgttttcataagctatcttgaagagtttatagaaataagatgaaaa 6988167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 13325603 - 13325663
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatg-gacctgtcataggctgttttcataagttctc 185  Q
    |||||||||| |||||||||||| ||||| ||  ||||||| |||||||||| ||||||||    
T  13325603 ttatgaaaatgagctgaaaaaagcttatgtgaaatgtcataagctgttttcaaaagttctc 13325663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 18066102 - 18066218
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacc-tgtcata 165  Q
    |||||||||||||||||  |||||| | || | |||||| |||||| |||||| |||  ||| ||||||||| |||||| || |||||  |  |||||||    
T  18066102 taaagttaaattgttttcatataagctataagctgttttcataagctatcttggagaacttaagaaaataaggtgaaaatagcttatgagcaatgtcata 18066201  T
Q  166 ggctgttttcataagtt 182  Q
     ||||||||||||||||    
T  18066202 agctgttttcataagtt 18066218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 40279411 - 40279471
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac 157  Q
    ||||||||| |||||| || ||| |||  ||||||||||||| |||||| |||||||||||    
T  40279411 agttgttttcataagctatattggagaacttatgaaaataagttgaaaacagtttatggac 40279471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 43529900 - 43529836
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||| |||||||||||| ||||||| || ||||| || || |||| ||||||||||||| |||||    
T  43529900 agagcttatgaaaataaactgaaaatagcttatgaacatggcataagctgttttcataaattctc 43529836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 186
Target Start/End: Original strand, 2996554 - 2996666
Alignment:
Q  75 aaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttt 173  Q
    ||||||||||| |||||||| || |||||||| |||||| |||||| ||||  |||||||||||| ||||||||| |||||||| ||||||| | |||||    
T  2996554 aaattgtttttatataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttt 2996653  T
Q  174 tcataagttctct 186  Q
    ||||||| |||||    
T  2996654 tcataagctctct 2996666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 6979028 - 6978960
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||| || |||| ||| |||||||    
T  6979028 agttgtttttataagccatcctaaagagtttatgaaaataagctgaaaacagcttatagacatgtcata 6978960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 186
Target Start/End: Complemental strand, 28300395 - 28300276
Alignment:
Q  68 taaagttaaattgtttttgtataagttgtagt-tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcatag 166  Q
    ||||||||||||||||||||||||| | ||   | |||| ||| || ||||||||||| ||||||||||||| |||||| |  ||| | || ||||||||    
T  28300395 taaagttaaattgtttttgtataagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaacaacttaagaacatgtcatag 28300296  T
Q  167 gctgttttcataagttctct 186  Q
    ||||||||||||| ||||||    
T  28300295 gctgttttcataaattctct 28300276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 17884042 - 17884120
Alignment:
Q  68 taaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||| || ||| |||| |||||||||| |||||||||    
T  17884042 taaagttaaattgtttttgtataagttatcagttgttttcataagctatattggagagcttatgaaaattagctgaaaa 17884120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 41336734 - 41336852
Alignment:
Q  68 taaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcata 165  Q
    ||||||||||||||||||||||| ||| | | |||||||| ||||| |   |||||| |||| ||||||||| ||||||||| |||||  | ||||||||    
T  41336734 taaagttaaattgtttttgtatatgttataaattgtttttctaagctagggtgaagaatttacgaaaataagttgaaaaaagcttatgaaaactgtcata 41336833  T
Q  166 ggctgttttcataagttct 184  Q
     ||||||||| ||||||||    
T  41336834 agctgttttcttaagttct 41336852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 21731722 - 21731633
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggctgttttcataagttctc 185  Q
    |||||||||||||||| || ||| ||| ||||||||| |||| |||||||||||||||  |  ||| ||| |||||||||||||||||||    
T  21731722 agttgtttttataagctatattggagaatttatgaaagtaagttgaaaaaagtttatgaaaattgtgataagctgttttcataagttctc 21731633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 47800604 - 47800675
Alignment:
Q  68 taaagttaaattgtttttgtataagttgtagttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||| |||||||||||||| |||      ||| |||||| ||||||||||| ||||||||||||||||||||    
T  47800604 taaagttaaaatgtttttgtataagctgt------tttcataagctatcttgaagagcttatgaaaataagctgaaaa 47800675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 51630085 - 51630163
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||||||||||  |||||| | || | | |||| |||||| |||||||||| |||||||||||||||||||||    
T  51630085 taaagttaaattgttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaataagctgaaaa 51630163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 17822931 - 17822842
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggctgttttcataagttctc 185  Q
    ||||||||| |||||| |||||| |||  ||||||||||||||| ||||||| |||||  |  ||||||| |||||||||||| ||||||    
T  17822931 agttgttttcataagctatcttggagaacttatgaaaataagctaaaaaaagcttatgaaaaatgtcataagctgttttcatatgttctc 17822842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 18011878 - 18011923
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||| |||||| ||||||||||||||||||||||||||| ||||    
T  18011878 tgttttcataagctatcttgaagagtttatgaaaataagctaaaaa 18011923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 30668432 - 30668383
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaa 146  Q
    |||||||||||||||| |||||| | ||||||||||| ||||||||||||    
T  30668432 agttgtttttataagctatcttggatagtttatgaaattaagctgaaaaa 30668383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 11264305 - 11264373
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    ||||||||| |||||||||| |  |||| ||||| ||||||| |||||| ||||||||||| |||||||    
T  11264305 agttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcata 11264373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 175
Target Start/End: Original strand, 23819096 - 23819171
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttc 175  Q
    |||||| |||||| ||||||||||| ||||  ||||||| |||||| |  |||||||| ||||||| |||||||||    
T  23819096 tgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgttttc 23819171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 29778767 - 29778842
Alignment:
Q  66 attaaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagct 140  Q
    ||||| || ||||||||||  |||||| |||| |||||||| |||||| | ||||||||| |||||||||||||||    
T  29778767 attaaggtgaaattgttttcatataagctgtaagttgttttcataagctaccttgaagagcttatgaaaataagct 29778842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 44249306 - 44249368
Alignment:
Q  114 atcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttca 176  Q
    |||||| ||||||||||||||||||||||| |||  ||||  || ||||||| ||||||||||    
T  44249306 atcttggagagtttatgaaaataagctgaagaaaacttatcaacatgtcataagctgttttca 44249368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 56480322 - 56480392
Alignment:
Q  68 taaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataa 137  Q
    |||||||||||||||| |||||||||| | || |||||| |||| | |||||| |||| ||||||||||||    
T  56480322 taaagttaaattgtttatgtataagttataagctgttttcataaactatcttggagagcttatgaaaataa 56480392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 679692 - 679809
Alignment:
Q  70 aagttaaattgttttt-gtataagttgta-gttgtttttataagccatcttg-aagagtttatgaaaataagctgaaaaaagtttatggacctgtcatag 166  Q
    |||||||||||||||| ||||||| | || |||||  | |||||  |||||| ||||| ||||||||||| |||||||| |||||||| || | |||||     
T  679692 aagttaaattgttttttgtataagatataagttgtagtcataagatatcttgtaagagcttatgaaaatatgctgaaaacagtttatgaacatatcataa 679791  T
Q  167 gctgttttcataagttct 184  Q
    | ||||||||||| ||||    
T  679792 gatgttttcataacttct 679809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 51210504 - 51210463
Alignment:
Q  114 atcttgaagagtttatgaaaataagctgaaaaa-agtttatg 154  Q
    |||||| |||||||||||||||||||||||||| ||||||||    
T  51210504 atcttggagagtttatgaaaataagctgaaaaatagtttatg 51210463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 437343 - 437259
Alignment:
Q  65 tattaaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaag 148  Q
    ||||||||||||||| |||||| ||  ||| | || ||||||||||| | || ||| ||| |||||||||||||||||| |||||    
T  437343 tattaaagttaaattatttttgcatgtgttatgagctgtttttataaactatattggagaatttatgaaaataagctgagaaaag 437259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 1312862 - 1312902
Alignment:
Q  114 atcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||||| |||||||||| |||||||||||||| ||||||||    
T  1312862 atcttggagagtttatggaaataagctgaaaacagtttatg 1312902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 7205852 - 7205800
Alignment:
Q  129 tgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagt 181  Q
    ||||||||||||||||| ||||| ||||| ||||||| |||||| || |||||    
T  7205852 tgaaaataagctgaaaatagtttgtggacatgtcataagctgttatcttaagt 7205800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 19250550 - 19250618
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    |||||||||||||||  |||||||||||  ||| |||||||| |||||  || |||||||| |||||||    
T  19250550 agttgtttttataagttatcttgaagagcatataaaaataagttgaaatcagcttatggacatgtcata 19250618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 29467666 - 29467622
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    |||||||||| |||||||||||||| || |||||||| |||||||    
T  29467666 agagtttatggaaataagctgaaaacagcttatggacatgtcata 29467622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 32421321 - 32421277
Alignment:
Q  101 gtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||||| |||||  |||| ||||||||||||||||||||    
T  32421321 gtttttataagctatcttagagaggttatgaaaataagctgaaaa 32421277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 153
Target Start/End: Original strand, 50400491 - 50400547
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttat 153  Q
    ||||||||| |||| | ||| |||| | ||||||||||||||||||||| |||||||    
T  50400491 agttgttttcataaactatcatgaaaactttatgaaaataagctgaaaacagtttat 50400547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 10272525 - 10272449
Alignment:
Q  70 aagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||| |||||||||| ||||||| | || |||||||| ||||||||||||| |||||||||||||||||||||||||    
T  10272525 aagtcaaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaa 10272449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 13604912 - 13604826
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    |||||| |||||  ||||||||||| ||||||||||||| |||||| |   ||||||| ||||||| |||||||||||||| |||||    
T  13604912 tgttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctct 13604826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 16937975 - 16937861
Alignment:
Q  72 gttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggct 169  Q
    ||||||||||||||||||| | | || |||||||||||| || || ||| |||  ||| ||||||||||||||||||| |||||  |  ||||||| |||    
T  16937975 gttaaattgtttttgtatatgctataagttgtttttatacgctatattggagaacttaggaaaataagctgaaaaaagcttatgaaatttgtcataagct 16937876  T
Q  170 gttttcataagttct 184  Q
    |||||||||||||||    
T  16937875 gttttcataagttct 16937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 2568632 - 2568749
Alignment:
Q  69 aaagttaaattgttttt-gtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcatag 166  Q
    ||||||||||||||||| ||||||| | || |||||||| |||||| ||| || |||| | ||||||||||||| |||| |  ||||| |  |||||||     
T  2568632 aaagttaaattgtttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataa 2568731  T
Q  167 gctgttttcataagttct 184  Q
    ||||||||||||||||||    
T  2568732 gctgttttcataagttct 2568749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 17258946 - 17258861
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||| |||| | ||| ||||||| |||||||||||||||||||| || ||||| || ||||||| ||| |||||||| ||||||    
T  17258946 tgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcataggttctc 17258861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 186
Target Start/End: Original strand, 17368680 - 17368769
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||||| |||||| |||||| |||| ||||| ||||||||||||||  |  |||| || ||||||| | ||||||||||||||||||    
T  17368680 agttgttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagttgttttcataagttctct 17368769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 185
Target Start/End: Original strand, 39105440 - 39105557
Alignment:
Q  70 aagttaaattgtttttgtataagttgtagt-tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac-ctgtcatagg 167  Q
    ||||||||||||||| ||||||| | || | |||||| |||||| |||||| |||  ||||||||||||||| |||| || ||||| ||  ||||||| |    
T  39105440 aagttaaattgttttcgtataagctataatctgttttcataagctatcttggagaacttatgaaaataagctaaaaatagcttatgaacaatgtcataag 39105539  T
Q  168 ctgttttcataagttctc 185  Q
    |||||||||||| |||||    
T  39105540 ctgttttcataaattctc 39105557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 5284514 - 5284446
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    ||||||||| ||| || ||| ||||||| | ||||||||||||||||||||| |||||||| |||||||    
T  5284514 agttgttttcataggctatcatgaagagctaatgaaaataagctgaaaaaagcttatggacatgtcata 5284446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 21768260 - 21768180
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataag 180  Q
    |||||| |||||  ||||||||||| ||| ||||||||| |||||| ||  ||||||| ||||||| ||||||||||||||    
T  21768260 tgttttcataagttatcttgaagagcttacgaaaataagttgaaaacagcgtatggacatgtcataagctgttttcataag 21768180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 186
Target Start/End: Original strand, 4659210 - 4659275
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    |||||||||| |||||||| ||||| ||||||||||  | ||||| |||||||||||| |||||||    
T  4659210 agagtttatggaaataagccgaaaacagtttatggaattttcataagctgttttcatacgttctct 4659275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 36318761 - 36318826
Alignment:
Q  81 tttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||||||| || |||||||| |||||| |||||| ||| |||||| ||||||||||||||    
T  36318761 tttttgtataagttttaagttgttttcataagctatcttggagaatttatgtaaataagctgaaaa 36318826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 2468435 - 2468503
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    |||| ||||||||||| ||| ||||||||||||| || |||||| |||| || |||||||| |||||||    
T  2468435 agttctttttataagctatcctgaagagtttatggaagtaagctcaaaacagcttatggacatgtcata 2468503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 97 - 176
Target Start/End: Complemental strand, 32703342 - 32703263
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttca 176  Q
    ||||||||| |||||| |||| | ||| ||||| ||||||||||||||| |||||||  || ||||||| ||||| ||||    
T  32703342 agttgttttcataagctatctaggagaatttataaaaataagctgaaaacagtttataaacgtgtcataagctgtcttca 32703263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 37611279 - 37611192
Alignment:
Q  99 ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||| |||||| |||||| |||| ||||| |||||| ||||||| || ||||| || ||||| | | |||||||||||| |||||    
T  37611279 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctct 37611192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 37788009 - 37787922
Alignment:
Q  99 ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||| |||||| |||||| |||| ||||| |||||| ||||||| || ||||| || ||||| | | |||||||||||| |||||    
T  37788009 ttgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctct 37787922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 1619064 - 1619177
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcatag 166  Q
    |||||||||||| |||  ||||||| | || | |||||| ||||||||| ||| ||||  ||||||||| ||||||||| |||||||| |  || ||||     
T  1619064 taaagttaaattctttccgtataagctataagctgttttcataagccat-ttggagagcatatgaaaatcagctgaaaacagtttatgtaaatggcataa 1619162  T
Q  167 gctgttttcataagt 181  Q
    |||||||||||||||    
T  1619163 gctgttttcataagt 1619177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 11700420 - 11700362
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataa 179  Q
    ||||||||||||||||| ||||||| || |||||||| ||||||| | ||||| |||||    
T  11700420 agagtttatgaaaataatctgaaaacagcttatggacatgtcataagttgtttccataa 11700362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 16458070 - 16457956
Alignment:
Q  73 ttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac-ctgtcataggctg 170  Q
    |||||||||||||||||| | | || ||||||||||| ||| |  ||| |||  || ||||||||| ||||||| || ||||| |  |||||||| ||||    
T  16458070 ttaaattgtttttgtatatgctataagttgtttttatgagctaaattggagaacttgtgaaaataaactgaaaagagcttatgaaaactgtcataagctg 16457971  T
Q  171 ttttcataagttctc 185  Q
    |||||||||||||||    
T  16457970 ttttcataagttctc 16457956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 36639529 - 36639615
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    |||||| |||||| ||||||||||| |||||||||||||  ||||| |  ||||||||  |||||| ||  ||||| ||||||||||    
T  36639529 tgttttcataagctatcttgaagagcttatgaaaataagaggaaaacaacttatggacacgtcataagcaattttcgtaagttctct 36639615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 6587195 - 6587086
Alignment:
Q  76 aattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgtttt 174  Q
    ||||||||| ||||||| | || |||||||| |||||| ||  || |||  || ||||||||||||| ||| || ||||| |||||||||| ||||||||    
T  6587195 aattgttttcgtataagctataagttgttttcataagctatagtggagaacttgtgaaaataagctgtaaacagcttatgaacctgtcataagctgtttt 6587096  T
Q  175 cataagttct 184  Q
      ||||||||    
T  6587095 tttaagttct 6587086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 7907868 - 7907933
Alignment:
Q  81 tttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||||||| || |||||||| ||||||  ||||| |||| |||||||| |||||||||||    
T  7907868 tttttgtataagttataagttgttttgataagctgtcttggagagcttatgaaattaagctgaaaa 7907933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 14331395 - 14331448
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgtttt 174  Q
    |||| |||||||||||||||||||  || |||||||| ||||||| ||||||||    
T  14331395 agagcttatgaaaataagctgaaatcagcttatggacatgtcataagctgtttt 14331448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 499773 - 499709
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||||||| |||||||||||||| |  || |  || ||||||| |||||||||||||||||||    
T  499773 agagtttatggaaataagctgaaaacaacttgttaacatgtcataagctgttttcataagttctc 499709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 2880613 - 2880565
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||||||||| ||   |||||||||||| ||||||||||||||    
T  2880613 agttgtttttataagctattcagaagagtttatggaaataagctgaaaa 2880565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 7674655 - 7674739
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||| |||||| |||||| ||| ||| ||||||||||||||||| |  ||||  || ||||||| | ||||| ||||||||||    
T  7674655 tgttttcataagctatcttggagaatttgtgaaaataagctgaaaacaccttataaacatgtcataagttgtttccataagttct 7674739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 7984978 - 7985030
Alignment:
Q  102 tttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||| |||||| |||||| ||| ||||||||||||||||||||| || |||||    
T  7984978 ttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 7985030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 8089957 - 8090029
Alignment:
Q  114 atcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||||||| |||||||||||||||||||| || ||| | |  | ||||| | |||||||||||| |||||    
T  8089957 atcttgaagagcttatgaaaataagctgaaaacagcttaggaatatatcataagttgttttcataagctctct 8090029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 185
Target Start/End: Original strand, 17827528 - 17827616
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||||||| ||||| |||||  |||| ||| |||||||||||||||| | |||| | || | ||||| | ||||||| |||||||||    
T  17827528 agttgtttttgtaagctatcttagagaggttacgaaaataagctgaaaataatttacgaacatttcataagttgttttcctaagttctc 17827616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 35445933 - 35445861
Alignment:
Q  74 taaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||||| ||||||||| || | |||| || ||||| |||||| ||| |||||||||||||| ||||||    
T  35445933 taaattgttttcgtataagttataaggtgttcttgtaagctatcttggagaatttatgaaaataaggtgaaaa 35445861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 40205140 - 40205064
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttt 173  Q
    ||||||||| |||||| ||| || |||| ||||  |||||||||||||| || |||||||| ||| ||| |||||||    
T  40205140 agttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagctgttt 40205064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 39980733 - 39980825
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggctgttttcataagttctctta 188  Q
    |||||||||||||||| || ||| |||  ||||||||||||| ||||||||| |||||  ||| |||||| ||||||||||||||||||||||    
T  39980733 agttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgaaaccagtcataagctgttttcataagttctctta 39980825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 21367641 - 21367760
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac-ctgtcata 165  Q
    ||||||||||||||||| ||||||  | || |||||||| |||||| |||||| |||  |||||||||||||||||||| || || || ||  |||||||    
T  21367641 taaagttaaattgttttcgtataatgtataagttgttttcataagctatcttggagaacttatgaaaataagctgaaaacagcttgtgaacaatgtcata 21367740  T
Q  166 ggctgttttcataagttctc 185  Q
     |||||||||||||||||||    
T  21367741 agctgttttcataagttctc 21367760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 402640 - 402519
Alignment:
Q  66 attaaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac-ctgtca 163  Q
    |||||| |||||||||||| ||||||||| || | ||||||||||| | ||||||||||  || ||||| ||||||||||| || ||||| ||  |||||    
T  402640 attaaatttaaattgttttcgtataagttataagctgtttttataatctatcttgaagaacttgtgaaattaagctgaaaacagcttatgaacaatgtca 402541  T
Q  164 taggctgttttcataagttctc 185  Q
    || |||||||||||| ||||||    
T  402540 taagctgttttcatacgttctc 402519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 23808121 - 23808045
Alignment:
Q  106 tataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagtt 182  Q
    ||||||| |||||| |||||||||||||||||| |||||| | ||| || || ||||||| |||| |||||||||||    
T  23808121 tataagctatcttggagagtttatgaaaataagatgaaaacaatttgtgaacatgtcataagctgctttcataagtt 23808045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 36887508 - 36887556
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  36887508 agttgttttcataagccatcttgaagaacttatgaaaataagctgaaaa 36887556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 24624250 - 24624297
Alignment:
Q  133 aataagctgaaaaaagtttatggacctgtcataggctgttttcataag 180  Q
    ||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  24624250 aataagctgaaaacagtttatggacatgtcataagctgttttcataag 24624297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 188
Target Start/End: Original strand, 53952076 - 53952143
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctctta 188  Q
    ||||||||||||||||||||||||| || | ||| || ||| ||  ||||||||||||||||||||||    
T  53952076 agagtttatgaaaataagctgaaaacagctcatgaacatgttatcagctgttttcataagttctctta 53952143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 165
Target Start/End: Original strand, 52618977 - 52619075
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    |||||||||||||||||  |||||||| || | |||||| | |||| ||||||||||| || |||||||||| |||||| || ||||| || |||||||    
T  52618977 taaagttaaattgttttcatataagttataagctgttttcacaagctatcttgaagagcttgtgaaaataaggtgaaaatagcttatgaacatgtcata 52619075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 35959552 - 35959471
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaag 148  Q
    |||||||||||| |||||||||| | |||| ||||||| ||||||| || ||  ||| ||| ||||||||||||||||||||    
T  35959552 taaagttaaattatttttgtatatgctgtaagttgtttctataagctatattagagaatttttgaaaataagctgaaaaaag 35959471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 36139899 - 36139960
Alignment:
Q  114 atcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttc 175  Q
    ||||||||||| |||||||||||||||||||| || || || || ||||||| |||||||||    
T  36139899 atcttgaagagcttatgaaaataagctgaaaacagcttgtgaacatgtcataagctgttttc 36139960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 45541549 - 45541662
Alignment:
Q  72 gttaaattgtttttgtataagttgtagttgttttt-ataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctg 170  Q
    |||||||| |||| ||||||| | |||||  |||| |||||| |||||| | |  |||||| ||||| ||||||| || ||||| || ||||||| ||||    
T  45541549 gttaaattattttcgtataagctatagtttattttcataagctatcttggataacttatgagaataacctgaaaacagcttatgaacatgtcataagctg 45541648  T
Q  171 ttttcataagttct 184  Q
    ||||||||||||||    
T  45541649 ttttcataagttct 45541662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 47132310 - 47132391
Alignment:
Q  73 ttaaattgtttttgtataagttgtag-ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttat 153  Q
    |||||||||||||||||| | | ||| |||||||||||||| || ||| |||  ||||||||||||| ||||||||| ||||    
T  47132310 ttaaattgtttttgtatatgctataggttgtttttataagctatattggagaagttatgaaaataagttgaaaaaagcttat 47132391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 5391912 - 5391968
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagtt 182  Q
    ||||||||||||| |||||| || ||||| || ||||||| ||||||||||||||||    
T  5391912 ttatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagtt 5391968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 47132027 - 47132087
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    |||| ||||||||||||||| ||||||||||  || |||| | ||||||||||||||||||    
T  47132027 ttataaaaataagctgaaaacagtttatggatatgacataagttgttttcataagttctct 47132087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 54837121 - 54837013
Alignment:
Q  77 attgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttc 175  Q
    |||||||||||||||  |||| ||| |||| |||||| |||||| | || |||| ||||||||| ||||| |  ||||| || ||||||| |||||||||    
T  54837121 attgtttttgtataaactgtaagttattttcataagctatcttggacagcttataaaaataagcggaaaacaagttatgaacatgtcataagctgttttc 54837022  T
Q  176 ataagttct 184  Q
    |||| ||||    
T  54837021 ataaattct 54837013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 27290943 - 27290884
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataag 180  Q
    |||||| ||| |||||||||||||| || |||||| | ||||||| ||||||||||||||    
T  27290943 agagttcatggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataag 27290884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 27896226 - 27896148
Alignment:
Q  107 ataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||| |||||| ||||||| ||||||||||||||  | | |||||| || ||||||  ||||||||||||| |||||    
T  27896226 ataagctatcttggagagtttttgaaaataagctgacgacaatttatgaacttgtcatgagctgttttcataaattctc 27896148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 35394561 - 35394507
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||||| |||||| |||||||||| |||||||||||||| |||||| || |||||    
T  35394561 tgttttcataagctatcttgaagaatttatgaaaataagttgaaaacagcttatg 35394507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 39723277 - 39723219
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||| ||||||||||||| || ||||| || ||||||| |||||||| |||||||||    
T  39723277 ttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttct 39723219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 185
Target Start/End: Complemental strand, 48286906 - 48286788
Alignment:
Q  68 taaagttaaattgtttttgtataagttgtagt-tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcatag 166  Q
    ||||||||||||||||   |||||||| ||   |||||| |||||  ||| || |||| ||||  ||||||||||| ||  |||||||||| |||| |||    
T  48286906 taaagttaaattgtttccatataagttataaactgttttcataagttatcatgtagagcttatagaaataagctgataacggtttatggacatgtcgtag 48286807  T
Q  167 gctgttttcataagttctc 185  Q
    | |||||||||||||||||    
T  48286806 gttgttttcataagttctc 48286788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 901930 - 901987
Alignment:
Q  99 ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatgga 156  Q
    |||||||||||||| || ||| |||  ||||||||||||| ||||||||| |||||||    
T  901930 ttgtttttataagctatattggagaacttatgaaaataagttgaaaaaagcttatgga 901987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 20502131 - 20502046
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||| |||||| ||| ||||||| |||||| ||||||||||||| |  | | |||| ||||||| ||||| | |||||||||||    
T  20502131 tgttttcataagctatcctgaagagcttatgagaataagctgaaaacaaatgacggacatgtcatatgctgtctgcataagttctc 20502046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 30573977 - 30573892
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||| |||||| |||||| |||| | ||||| |||||||||||| || ||||| || || ||||   |||||||||||||||||    
T  30573977 tgttttcataagctatcttggagagctgatgaacataagctgaaaacagcttatgaacatgccataatttgttttcataagttctc 30573892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 33972797 - 33972740
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac 157  Q
    ||||||||||||| || ||| |||  || |||||||||||||||||||| ||||||||    
T  33972797 tgtttttataagctattttggagaacttgtgaaaataagctgaaaaaaggttatggac 33972740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 36101593 - 36101650
Alignment:
Q  118 tgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttc 175  Q
    ||||||| |||||||||||||||||||| || || || || ||||||| |||||||||    
T  36101593 tgaagagcttatgaaaataagctgaaaacagcttgtgaacatgtcataagctgttttc 36101650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 36631147 - 36631066
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaag 148  Q
    ||||||||||||||||||||| | | | || ||||||||||| ||| || ||| |||  |||||||||||||| ||||||||    
T  36631147 taaagttaaattgtttttgtacatgctataagttgtttttatgagctatattggagaacttatgaaaataagcagaaaaaag 36631066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 180
Target Start/End: Complemental strand, 39602305 - 39602193
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcatag 166  Q
    |||||||||||||||   ||||||||| || | |||||| |||||| |||||  |||  ||||||||||||| |||||| | |||||| || |||||||     
T  39602305 taaagttaaattgttgc-gtataagttataagctgttttcataagctatctttgagaacttatgaaaataagttgaaaacaatttatgaacatgtcataa 39602207  T
Q  167 gctgttttcataag 180  Q
    ||||| ||||||||    
T  39602206 gctgtcttcataag 39602193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 178
Target Start/End: Complemental strand, 16790439 - 16790364
Alignment:
Q  102 tttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcata 178  Q
    |||| |||||| |||||| | || |||||||||||| ||||||| || ||||||| |||||||| ||| ||||||||    
T  16790439 ttttcataagctatcttggatagcttatgaaaataaactgaaaacagcttatgga-ctgtcataagctattttcata 16790364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 37811859 - 37811945
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    |||||| |||||||||| || |||| | ||| ||||||| |||||| |||||||| || ||||||| ||||||||||||||||||||    
T  37811859 tgttttcataagccatcatggagagctaatggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctct 37811945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 43332464 - 43332536
Alignment:
Q  74 taaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||| |||||||||||||||| | |||||| |||||| ||||||||||| |||| |||||||||||||||    
T  43332464 taaattggttttgtataagttgtaagctgttttcataagctatcttgaagagcttattaaaataagctgaaaa 43332536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 27820433 - 27820346
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    ||||| |||||||||| |||||||| | || | ||||||||||||| |||||| ||| ||||||||||||||||||||| || |||||    
T  27820433 taaagctaaattgtttatgtataagctatatgctgtttttataagctatcttggagaatttatgaaaataagctgaaaatagcttatg 27820346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 183
Target Start/End: Original strand, 35925686 - 35925780
Alignment:
Q  87 tataagttgtagttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttc 183  Q
    ||||||||||  ||||||  |||||| ||| || |||||||||| ||||||| |||||| || ||||| || ||||||| |||||||||||||||||    
T  35925686 tataagttgt--ttgtttccataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttc 35925780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 51695585 - 51695504
Alignment:
Q  74 taaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    ||||||||||| ||||||||| | || |||||| |||||| |||||| ||| ||||||||||||||||||||| || |||||    
T  51695585 taaattgttttcgtataagttatcagatgttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatg 51695504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 28689509 - 28689429
Alignment:
Q  106 tataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||| |||||| | || |||||||||||||||||||| |  |||||||| ||||||| ||||||| | ||||||||||    
T  28689509 tataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataagctgtttccgtaagttctct 28689429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 1565629 - 1565514
Alignment:
Q  70 aagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggc 168  Q
    ||||||||||||||||||||||  |||| | ||||||  ||| | || ||| |||| | |||||||||||||||||| || ||||| || ||||||| ||    
T  1565629 aagttaaattgtttttgtataaagtgtaagctgttttcttaatctattttggagagctcatgaaaataagctgaaaacagcttatgcacatgtcataagc 1565530  T
Q  169 tgttttcataagttct 184  Q
    ||| ||| ||||||||    
T  1565529 tgtcttcctaagttct 1565514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 11639458 - 11639399
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataag 180  Q
    |||| ||||||||||||||| |||| || |||||||| ||||||| ||||||||||||||    
T  11639458 agagcttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataag 11639399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 17603476 - 17603361
Alignment:
Q  72 gttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggct 169  Q
    ||||||||||||||||||| | | || ||||||||||||||| || ||| |||  || |||||||||| || ||||||||||||  |  ||||||| |||    
T  17603476 gttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttctgaaaataagttgtaaaaagtttatgaaaattgtcataagct 17603377  T
Q  170 gttttcataagttctc 185  Q
    |||||| |||||||||    
T  17603376 gttttcgtaagttctc 17603361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 184
Target Start/End: Complemental strand, 37842421 - 37842334
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    ||||||||| |||||| ||||||||||  |||| |||||||||||||||  | ||||| || ||||||  | ||||||||||||||||    
T  37842421 agttgttttcataagctatcttgaagaacttataaaaataagctgaaaactgcttatgaacatgtcattagatgttttcataagttct 37842334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 7472287 - 7472369
Alignment:
Q  70 aagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagttt 151  Q
    ||||||||||||||||||||||  | || | |||||  |||||| |||||| |||| |||||||||||||||||||| |||||    
T  7472287 aagttaaattgtttttgtataatctataagctgtttccataagctatcttggagagcttatgaaaataagctgaaaacagttt 7472369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 38503531 - 38503437
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac-ctgtcataggctgttttcataagttctcttacg 190  Q
    |||||||||| | ||| |||||| |||  |||||||||||||||||||| |  ||||| ||  ||||||||||||||| ||||||||||| ||||    
T  38503531 agttgtttttgttagctatcttggagaacttatgaaaataagctgaaaacaacttatgaacaatgtcataggctgtttccataagttctcgtacg 38503437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 3924627 - 3924676
Alignment:
Q  96 tagttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||| |||||    
T  3924627 tagttgtttttataagctatcctgaagagtttatggaaataagccgaaaa 3924676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 7575746 - 7575678
Alignment:
Q  115 tcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    ||||| ||||||||||||||||||||| ||| || ||||| |||||||||| ||  ||||||||||||||    
T  7575746 tcttggagagtttatgaaaataagctg-aaacagcttatgaacctgtcataagccattttcataagttct 7575678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 19092440 - 19092368
Alignment:
Q  106 tataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataa 179  Q
    ||||||| ||| ||||||| ||||||||||||| |||||| ||||||| ||| |||||||| || |||||||||    
T  19092440 tataagctatcctgaagagcttatgaaaataaggtgaaaacagtttat-gacatgtcatagactattttcataa 19092368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 27140485 - 27140558
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttt 173  Q
    ||||||||||||| ||| || |||| ||||| |||||||||||||| |  |||||||| ||||||| |||||||    
T  27140485 tgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgttt 27140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 10439714 - 10439778
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||||||| |||||||||||||  || |||||||| ||||||||  |||||||||||| ||||    
T  10439714 agagtttatggaaataagctgaaagcagattatggacatgtcatagtttgttttcataagctctc 10439778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 3234107 - 3233992
Alignment:
Q  72 gttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggct 169  Q
    ||||||||||||||||||| | | || ||||||||||||||| || ||| |||  |||||||||||||  |||||||  |||||  | |||| ||| | |    
T  3234107 gttaaattgtttttgtatatgctataagttgtttttataagctatattggagaacttatgaaaataagtagaaaaaaacttatgaaaactgttataagtt 3234008  T
Q  170 gttttcataagttctc 185  Q
    ||||||||||||||||    
T  3234007 gttttcataagttctc 3233992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 27820260 - 27820205
Alignment:
Q  99 ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||||| ||||||| ||||| |||| ||||||||||||||||||||| || |||||    
T  27820260 ttgtttgtataagctatcttaaagaatttatgaaaataagctgaaaatagcttatg 27820205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 37593740 - 37593665
Alignment:
Q  107 ataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagtt 182  Q
    |||||| || |||||||| |||||||||||||||||||| || ||||| || ||||||| | ||| ||||| ||||    
T  37593740 ataagctattttgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagttgtgttcattagtt 37593665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 184
Target Start/End: Original strand, 43338144 - 43338207
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||| ||||||||||| |||||||| || ||||| || ||||||| ||||||| ||||||||||    
T  43338144 agagcttatgaaaataggctgaaaatagattatgaacatgtcataagctgtttccataagttct 43338207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 44422708 - 44422791
Alignment:
Q  102 tttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||||||||| ||| || |||| |||||||||||||||| |   || |||||||| ||||||| ||| |||||||||| ||||    
T  44422708 tttttataagctatcctggagagcttatgaaaataagctgtagtcagcttatggacatgtcataagctattttcataagctctc 44422791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 52286687 - 52286742
Alignment:
Q  102 tttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac 157  Q
    |||| ||||| |||||||||||||||||| ||||||||| |||| || ||||||||    
T  52286687 ttttcataagtcatcttgaagagtttatggaaataagctaaaaatagcttatggac 52286742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 4202214 - 4202140
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgtttt 174  Q
    |||||| | |||| |||| | |||| ||| |||||||||||||||| || |||||||| ||||||| ||||||||    
T  4202214 tgttttcaaaagctatctggcagagcttacgaaaataagctgaaaatagcttatggacatgtcataagctgtttt 4202140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 6556947 - 6557025
Alignment:
Q  70 aagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaa 147  Q
    ||||||||||||||||||||| ||| | |||||||||||||||  || || ||||  |||||| |||||||| ||||||    
T  6556947 aagttaaattgtttttgtatatgttataagttgtttttataagttatattaaagaacttatgacaataagctaaaaaaa 6557025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 29723522 - 29723580
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    ||||| ||||||| |||||| ||||||||||| ||||||| ||||||| ||| ||||||    
T  29723522 ttatgtaaataagttgaaaacagtttatggacatgtcataagctgtttccattagttct 29723580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 31517788 - 31517718
Alignment:
Q  115 tcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||| |||| |||||||||||||||||||| || ||||| || ||||||  | |||||| ||||||||||    
T  31517788 tcttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctc 31517718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 34290210 - 34290288
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||| ||  ||||||||||| | || | |||||| |||||| ||||||||||  ||||||||||||||||||||    
T  34290210 taaagttaattttattttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaa 34290288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 37769726 - 37769676
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaa 147  Q
    ||||||||||||||||  ||||| ||| |||||||||| ||||||||||||    
T  37769726 agttgtttttataagctgtcttgcagaatttatgaaaacaagctgaaaaaa 37769676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 45975697 - 45975751
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||||| |||||| |||||| ||| ||||||||||||||||||||| || |||||    
T  45975697 tgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatg 45975751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 6292521 - 6292574
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgtttt 174  Q
    |||| |||||||||||||||||||| || ||||| || ||||||| ||||||||    
T  6292521 agagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgtttt 6292574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 10280664 - 10280741
Alignment:
Q  108 taagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||| ||||| ||||  ||||||||||||||||| ||||| ||||| || ||  ||| | |||||||||||||||||    
T  10280664 taagctatcttcaagaacttatgaaaataagctgacaaaagcttatgaacatgaaataagttgttttcataagttctc 10280741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 47432105 - 47432150
Alignment:
Q  103 ttttataagccatcttgaagagtttatgaaaataagctgaaaaaag 148  Q
    |||||||||  || ||||||| ||||||||||||||||||||||||    
T  47432105 ttttataagttatattgaagaatttatgaaaataagctgaaaaaag 47432150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 4768878 - 4768810
Alignment:
Q  114 atcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagtt 182  Q
    |||||| ||| |||||| |||||||||||||| |  |||||||| |||| || ||||||||| ||||||    
T  4768878 atcttggagaatttatggaaataagctgaaaacaagttatggacatgtcgtaagctgttttcgtaagtt 4768810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 7137061 - 7136977
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||| |||||| |||||| |||  |||||||||||||||||||| |  ||||| |  ||||||| ||  ||||||||||||||    
T  7137061 tgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttcataagttct 7136977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 10199450 - 10199386
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||| |||||||||||||||||||| |  ||||| || ||||||| ||| ||||||| |||||||    
T  10199450 agagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctc 10199386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 26779991 - 26779943
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||| |||||| ||||||||||  ||||||||||||| ||||||    
T  26779991 agttgttttcataagctatcttgaagaacttatgaaaataagttgaaaa 26779943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 30815699 - 30815643
Alignment:
Q  117 ttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttt 173  Q
    |||||||  |||||||||||||||||||| | |||||| || ||||||| |||||||    
T  30815699 ttgaagaacttatgaaaataagctgaaaacattttatgaacatgtcataagctgttt 30815643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 33975598 - 33975634
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggac 157  Q
    |||| |||||||||||||||||||| |||||||||||    
T  33975598 agagcttatgaaaataagctgaaaatagtttatggac 33975634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Original strand, 35669004 - 35669064
Alignment:
Q  125 tttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||| ||||||| |||||| | ||||||||| | ||||| |||| ||||||||||||||    
T  35669004 tttatggaaataagttgaaaacaatttatggacatatcataagctgctttcataagttctc 35669064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Complemental strand, 38170736 - 38170668
Alignment:
Q  117 ttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||||| ||| ||||| |||||||||| |  ||||| || ||||||| |||||||||||||| ||||    
T  38170736 ttgaagagcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgttttcataagctctc 38170668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 51190860 - 51190900
Alignment:
Q  105 ttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||| ||||||||||  ||||||||||||||||||||    
T  51190860 ttataagctatcttgaagaacttatgaaaataagctgaaaa 51190900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 17944439 - 17944358
Alignment:
Q  68 taaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaag 148  Q
    ||||||||||||||||||||||| ||||| ||||||||| |||||  |||||| | | ||||||||| ||||||||||||||    
T  17944439 taaagttaaattgtttttgtatatgttgtaagttgttttcataagttatcttggataatttatgaaattaagctgaaaaaag 17944358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 19302651 - 19302540
Alignment:
Q  72 gttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggct 169  Q
    ||||||||||||||||||| ||| || ||||||||||||||| ||    ||||  ||||||||||||| |||||||||||||||  |  ||||||| |||    
T  19302651 gttaaattgtttttgtatatgttataagttgtttttataagctat----aagaacttatgaaaataagttgaaaaaagtttatgaaaattgtcataagct 19302556  T
Q  170 gttttcataagttctc 185  Q
    |||||||||| |||||    
T  19302555 gttttcataaattctc 19302540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 12110334 - 12110447
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcatag 166  Q
    |||||| |||||||||| ||||||| | || | |||||| |||||| ||||||||||  |||||||||||| || |||| ||||| || || |||||||     
T  12110334 taaagtcaaattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaaacagtttgtgaacatgtcataa 12110433  T
Q  167 gctgttttcataag 180  Q
    | ||||||||||||    
T  12110434 gttgttttcataag 12110447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 19719047 - 19719100
Alignment:
Q  134 ataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctctt 187  Q
    |||||||||||| |||||||| || ||||||| | |||||||||||||||||||    
T  19719047 ataagctgaaaacagtttatgaacatgtcataagttgttttcataagttctctt 19719100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 12792624 - 12792576
Alignment:
Q  102 tttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtt 150  Q
    |||| |||||| ||||||||||| |||||||||||||||||||| ||||    
T  12792624 ttttcataagctatcttgaagagcttatgaaaataagctgaaaacagtt 12792576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 27626178 - 27626106
Alignment:
Q  108 taagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataag 180  Q
    ||||| ||| ||||||| ||||| ||||||| | |||| ||||||||||| ||||||| ||||||| ||||||    
T  27626178 taagctatcatgaagagcttatggaaataagtttaaaacagtttatggacatgtcataagctgtttccataag 27626106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 25670650 - 25670567
Alignment:
Q  99 ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagtt 182  Q
    ||||||||||||   |||||| |||| || ||||||||||||||||| | |||||  || ||||||| | ||||||||||||||    
T  25670650 ttgtttttataacatatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttcataagtt 25670567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 12834992 - 12834946
Alignment:
Q  133 aataagctgaaaaaagtttatggacctgtcataggctgttttcataa 179  Q
    ||||||||||||| ||||||||||| ||||||| ||||||| |||||    
T  12834992 aataagctgaaaacagtttatggacatgtcataagctgtttccataa 12834946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 185
Target Start/End: Complemental strand, 28691899 - 28691813
Alignment:
Q  99 ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||||| |||||| ||| || |||  |||||||||||| |||| || | |||||||||  |||||| |||||||||||||| ||||    
T  28691899 ttgttttcataagctatcctggagatcttatgaaaataaactgataacaatttatggacaagtcataagctgttttcataagatctc 28691813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 33894657 - 33894719
Alignment:
Q  123 agtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||||  |||||||||||||| |  |||||||| ||||||| |||||||||||||| ||||    
T  33894657 agtttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctc 33894719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 43219681 - 43219623
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||| ||||||||||||| || ||||| || ||||||| |||||||| |||||||||    
T  43219681 ttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttct 43219623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 44808191 - 44808245
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataag 180  Q
    |||||||||||||||||||| || |||||||| ||||||| | | ||||||||||    
T  44808191 ttatgaaaataagctgaaaacaggttatggacatgtcataagttattttcataag 44808245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 46104633 - 46104551
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataa 179  Q
    ||||||||| |||||| ||  ||||||| |||||||||||||||| ||| | ||||| ||| ||||||  | |||||||||||    
T  46104633 agttgttttcataagctatgctgaagagcttatgaaaataagctggaaacattttattgacatgtcatgagttgttttcataa 46104551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 13960757 - 13960700
Alignment:
Q  129 tgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||||||||||| | || |||||||| ||| ||| |||||||||||||| |||||    
T  13960757 tgaaaataagctgaacatagcttatggacttgttataagctgttttcataagctctct 13960700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 19214472 - 19214383
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcataggctgttttcataagttctc 185  Q
    |||||||| ||||||| || ||| |||  ||||||||||||| ||||| |||||||||  |  ||||||  |||||||||||||||||||    
T  19214472 agttgtttgtataagctatattgtagaacttatgaaaataagttgaaacaagtttatgaaaattgtcatttgctgttttcataagttctc 19214383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 28613629 - 28613552
Alignment:
Q  69 aaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||||||||||||||||||| | ||||||| |  ||||| || || | ||| ||| ||||||||||||||||    
T  28613629 aaagttaaattgtttttgtataagttataagttgttgtcgtaagctattttaaggaggttaagaaaataagctgaaaa 28613552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 46280368 - 46280287
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaag 148  Q
    |||| |||||||||||||||||| | | || | ||||||||||||| || ||| |||  ||||||||||| |||||||||||    
T  46280368 taaatttaaattgtttttgtatatgctataagctgtttttataagctatattggagaacttatgaaaataggctgaaaaaag 46280287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 9050642 - 9050725
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||| |||| | |||||| |||  || |||||||||||||||||||  ||||| || || |||| ||||||||||||||||||    
T  9050642 tgttttcataaactatcttggagaacttgtgaaaataagctgaaaaaa-attatgaacatgacatatgctgttttcataagttct 9050725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 20269551 - 20269631
Alignment:
Q  69 aaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaag 148  Q
    |||||||||||||||||||| | ||| | |||||||||  |||||  | ||| ||| |||||||||||||| |||||||||    
T  20269551 aaagttaaattgtttttgtaaatgttataagttgttttactaagctgtattggagaatttatgaaaataagttgaaaaaag 20269631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 44151546 - 44151478
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    ||||||||| |||| | |||||||| || ||||| |||||||||||||| |  |||||||| |||||||    
T  44151546 agttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcata 44151478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 46082064 - 46082128
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||| |||||||||||||||||||| |  |||||| | ||||||| | |||||||||||| ||||    
T  46082064 agagcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctc 46082128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 48917412 - 48917368
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctg 141  Q
    ||||||||| |||||| |||||| |||| ||||||||||||||||    
T  48917412 agttgttttcataagctatcttggagagcttatgaaaataagctg 48917368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 185
Target Start/End: Complemental strand, 20368274 - 20368158
Alignment:
Q  70 aagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggc 168  Q
    ||||| |||||||||||||| |||| || |||||||| ||||||  ||||| |||  ||||||||||||| |||||  || ||||| || ||||||| |     
T  20368274 aagttgaattgtttttgtatgagttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagt 20368175  T
Q  169 tgttttcataagttctc 185  Q
    |||||||||||||||||    
T  20368174 tgttttcataagttctc 20368158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 31624097 - 31624181
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||| ||| || |||||| |||  ||||||||||||| |||||| || ||||| || ||||||| ||||||||||||||||||    
T  31624097 tgttttcataggctatcttggagaaattatgaaaataagttgaaaacagcttatgaacatgtcataagctgttttcataagttct 31624181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 34430550 - 34430470
Alignment:
Q  75 aaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||||||||||||||| ||| || | |||||| |||||| |||||| |||  ||||||||||||||||||||||| |||||    
T  34430550 aaattgtttttgtatatgttataaggtgttttcataagctatcttggagaagttatgaaaataagctgaaaaaagcttatg 34430470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 11600919 - 11600861
Alignment:
Q  118 tgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttca 176  Q
    |||||||  ||||||||||||||||||| ||||| ||||| ||||||| ||||||||||    
T  11600919 tgaagagcctatgaaaataagctgaaaatagtttttggacatgtcataagctgttttca 11600861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 34939758 - 34939824
Alignment:
Q  107 ataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttt 173  Q
    |||||| ||| || |||||||||| |||||||||||||| | ||||||||| ||||||| |||||||    
T  34939758 ataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgttt 34939824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 27894053 - 27894110
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac 157  Q
    |||||| |||||  |||||||| || |||||||||||||||||||| |||||||||||    
T  27894053 tgttttcataagatatcttgaaaagcttatgaaaataagctgaaaacagtttatggac 27894110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 5564194 - 5564146
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||| ||||||  |||||||||||||||| ||||||||||||||    
T  5564194 agttgttttcataagctgtcttgaagagtttatgcaaataagctgaaaa 5564146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 32171420 - 32171360
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||| |||||||||||||| || || ||||| ||||||| |||||||||||||| |||||    
T  32171420 ttatggaaataagctgaaaatagcttctggacttgtcataagctgttttcataagctctct 32171360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 283134 - 283185
Alignment:
Q  132 aaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttc 183  Q
    |||||||||||||| ||||||||||| ||||||| |||||||| ||| ||||    
T  283134 aaataagctgaaaatagtttatggacatgtcataagctgtttttatacgttc 283185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 6536597 - 6536676
Alignment:
Q  76 aattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    ||||||||||||||| | | || |||||||||| |||| || ||| ||| |||||||||||||| ||||||||| |||||    
T  6536597 aattgtttttgtatatgctataagttgtttttagaagctatattggagaatttatgaaaataagttgaaaaaagcttatg 6536676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 186
Target Start/End: Complemental strand, 34538278 - 34538195
Alignment:
Q  103 ttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    |||||||||| ||| |  ||||||| |  |||||||||||||| ||||||||||| |||| || |||||||| ||||| |||||    
T  34538278 ttttataagctatcctagagagtttgtataaataagctgaaaatagtttatggacatgtcgtaagctgtttttataagatctct 34538195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 34544186 - 34544127
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataag 180  Q
    |||||||||  ||||||| |||||| ||||||||||| |||||||  |||||||||||||    
T  34544186 agagtttatagaaataagatgaaaatagtttatggacatgtcataaactgttttcataag 34544127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 696635 - 696693
Alignment:
Q  126 ttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||| ||||||||||||| || ||||| || ||||||| |||||||| |||||||||    
T  696635 ttatgagaataagctgaaaacagcttatgaacatgtcataagctgttttgataagttct 696693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 725698 - 725632
Alignment:
Q  120 aagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||| ||||| |||||||||||||| ||| || |||| ||||||| | |||||||||||| |||||    
T  725698 aagagcttatggaaataagctgaaaatagtctacggacatgtcataagttgttttcataagctctct 725632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 13907822 - 13907907
Alignment:
Q  69 aaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttat 153  Q
    ||||| ||| |||||||||| ||  |||| |||||||| | |||| ||||||||||| |||||||||||| | ||||| |||||||    
T  13907822 aaagtcaaactgtttttgtaaaatctgtaagttgttttcaaaagctatcttgaagagcttatgaaaataaacggaaaacagtttat 13907907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 26694853 - 26694930
Alignment:
Q  69 aaagttaaattgtttttgtataagttgtag-ttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    |||||||||||||||  ||||| ||| ||  ||||||| |||| | ||||||||||  ||||||||||||||||||||    
T  26694853 aaagttaaattgtttccgtatatgttataaattgttttcataaactatcttgaagaacttatgaaaataagctgaaaa 26694930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 2735043 - 2735159
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcata 165  Q
    |||||||||||| |||||||||||  | || | |||||| |||||| |||||||| |  |||||||||||||| ||||| || |||||  |  |||||||    
T  2735043 taaagttaaattatttttgtataatctataagctgttttcataagcaatcttgaacaacttatgaaaataagccgaaaacagcttatgaaaaatgtcata 2735142  T
Q  166 ggctgttttcataagtt 182  Q
     || |||||||||||||    
T  2735143 agccgttttcataagtt 2735159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 6909968 - 6909892
Alignment:
Q  68 taaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaa 143  Q
    ||||||||||||||||||||||| | | | ||||||||| ||||   |||||| ||| ||||||||| |||||||||    
T  6909968 taaagttaaattgtttttgtatatgctataagttgttttcataacatatcttggagaatttatgaaattaagctgaa 6909892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 13907589 - 13907637
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||| ||||||||||||| |||  |||||||||||| |||||||    
T  13907589 agttgttttcataagccatcttggagaaattatgaaaataaactgaaaa 13907637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 32578043 - 32577963
Alignment:
Q  106 tataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||| ||| |||||||  |||| |||||||||||||| || | | |||| ||||||| | |||||||||||| |||||    
T  32578043 tataagctatcctgaagagcatatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctct 32577963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 34404763 - 34404703
Alignment:
Q  125 tttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||||||||| |||||||| || ||||| || ||||||| | | |||||||||||||||    
T  34404763 tttatgaaaatatgctgaaaacagcttatgtacatgtcataagatattttcataagttctc 34404703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 13459673 - 13459737
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||| ||||||||||| |||||||| |||||||| |  ||||||| |||||||||||||||||||    
T  13459673 agagcttatgaaaataggctgaaaacagtttatgaaaatgtcataagctgttttcataagttctc 13459737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 42370417 - 42370345
Alignment:
Q  107 ataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataa 179  Q
    |||||| ||| ||||||||||||| |||||||||||||| ||||| | ||| ||||||| ||| |||||||||    
T  42370417 ataagctatcatgaagagtttatggaaataagctgaaaacagtttgtagacatgtcatacgctattttcataa 42370345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 38648325 - 38648444
Alignment:
Q  68 taaagttaaattgtttttgtataagttgt-agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg-gacctgtcata 165  Q
    |||| |||| ||||||||||||| ||| | ||||||||| |||||| |||||| |||  |||||||| || ||| ||||||| ||||| || |||||||     
T  38648325 taaaattaacttgtttttgtatatgttatgagttgttttcataagctatcttgtagaacttatgaaattacgcttaaaaaagcttatgagaactgtcatg 38648424  T
Q  166 ggctgttttcataagttctc 185  Q
     |||||||||||||| ||||    
T  38648425 agctgttttcataaggtctc 38648444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 20672757 - 20672822
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcata 165  Q
    ||||||||||||| ||| || |||| |||||||||||||||||||| || ||||| || |||||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcata 20672822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 27028807 - 27028892
Alignment:
Q  70 aagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||||||||||||| |||||| | | || | |||||| |||||| |||||| |||| |||||||||||||||||||| || |||||    
T  27028807 aagttaaattgtttgtgtatatgctataagctgttttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatg 27028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 29168711 - 29168642
Alignment:
Q  118 tgaagagtttatgaaaataagctgaaaaa-agtttatggacctgtcataggctgttttcataagttctct 186  Q
    |||||||||||||||| | ||||| |||| || |||||||| ||||||| |||||||||||||| |||||    
T  29168711 tgaagagtttatgaaagttagctggaaaatagcttatggacatgtcataagctgttttcataagctctct 29168642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 4762513 - 4762561
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaa 145  Q
    ||||||||| |||||| ||||||||||| ||||| ||||||||||||||    
T  4762513 agttgttttcataagctatcttgaagagcttatgtaaataagctgaaaa 4762561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 8066812 - 8066748
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||||||||||||||||||||||||||  |||||||| ||||||  ||  |||||||||| ||||    
T  8066812 agagtttatgaaaataagctgaaaaaaacttatggacatgtcatcagcgattttcataagctctc 8066748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 179
Target Start/End: Original strand, 11415128 - 11415240
Alignment:
Q  68 taaagttaaattgtttttgtataagttgta-gttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcatag 166  Q
    |||||| ||||| ||||| |||||||| || | |||||| |||||| ||| |  ||||||| |||||||||||||| || || |||||||| ||| |||     
T  11415128 taaagtcaaattatttttatataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataa 11415227  T
Q  167 gctgttttcataa 179  Q
    ||||||| |||||    
T  11415228 gctgtttccataa 11415240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 11569520 - 11569432
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctctta 188  Q
    |||||| |||||| ||| || |||| || ||||||||||||||||| |  ||||| || ||||||| ||||||| |||||| |||||||    
T  11569520 tgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctctta 11569432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 39866791 - 39866740
Alignment:
Q  106 tataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggac 157  Q
    ||||||| ||||||||||| |||||||||||| ||||||| || ||||||||    
T  39866791 tataagctatcttgaagagcttatgaaaataaactgaaaacagcttatggac 39866740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 11494155 - 11494197
Alignment:
Q  102 tttttataagccatcttgaagagtttatgaaaataagctgaaa 144  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  11494155 ttttcataagctatcttgaagagcttatgaaaataagctgaaa 11494197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 29169160 - 29169075
Alignment:
Q  100 tgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctct 186  Q
    ||||||| ||||  ||| ||||||||||||| |||||||| ||||| || |||||||  ||| ||| |||||||| |||||||||||    
T  29169160 tgtttttgtaagttatcctgaagagtttatggaaataagccgaaaatagcttatggatatgttataagctgtttt-ataagttctct 29169075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Original strand, 34290873 - 34290947
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgt 171  Q
    |||||||||| ||| | ||| || |||||| ||||||||||||||||||| | |||||||| ||| ||| |||||    
T  34290873 agttgtttttctaatctatcctggagagttaatgaaaataagctgaaaaaggcttatggacatgtaataagctgt 34290947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 3254235 - 3254316
Alignment:
Q  103 ttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttct 184  Q
    |||||||||| ||| |  ||||| |||  |||||||||||||| || ||||| || ||||||| ||||||||| ||||||||    
T  3254235 ttttataagctatcctatagagtgtatagaaataagctgaaaacagcttatgaacatgtcataagctgttttcttaagttct 3254316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 26473818 - 26473730
Alignment:
Q  97 agttgtttttataagccatcttgaagagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    ||||||||| |||||| ||| |  |||| ||||||||||||| | |||  || |||| ||| ||||||| |||||||||||||| ||||    
T  26473818 agttgttttcataagctatcctagagagcttatgaaaataagttaaaactagcttatagacatgtcataagctgttttcataagctctc 26473730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 31168035 - 31168075
Alignment:
Q  114 atcttgaagagtttatgaaaataagctgaaaaaagtttatg 154  Q
    |||| |||||| |||||||| ||||||||||||||||||||    
T  31168035 atctagaagagcttatgaaagtaagctgaaaaaagtttatg 31168075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 42215348 - 42215284
Alignment:
Q  121 agagtttatgaaaataagctgaaaaaagtttatggacctgtcataggctgttttcataagttctc 185  Q
    |||| ||||| |||||||||||||| || ||||| ||  |||||| ||||||||||| |||||||    
T  42215348 agagcttatgtaaataagctgaaaacagcttatgaacaagtcataagctgttttcattagttctc 42215284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University