View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18316_low_7 (Length: 321)
Name: NF18316_low_7
Description: NF18316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18316_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 4871553 - 4871258
Alignment:
| Q |
1 |
ttttataaccgttgtttgataataacattaatacattttgtaaaaatcaaatattatatgatcaaaaactttattaattttttaa-tataatgtatttga |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |
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| T |
4871553 |
ttttataaccgttgtttgataataacattaatacattttgtaaaaatcaaatattatatgatcaaaaaatttattaatttttttagtataatgtatttga |
4871454 |
T |
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| Q |
100 |
gg-cccaatgtaatttgcgagaacctaaattggagtttcattctatttatttgatgcatttccactatgtggaagcatatcaaataagtgctcgtagacc |
198 |
Q |
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|| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4871453 |
gggcccaatgtaatttgcgggaacctaaattggagttttattctatttatttgatgcatttccactatgtggaagcatatcaaataagtgctcgtagacc |
4871354 |
T |
|
| Q |
199 |
atactaaattttcctctgaattgttgttgtagggaagtggaagataaggcctctaagtaattagatgaatgataagaggtttgccaattgagttttatc |
297 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4871353 |
atactaaactttcctctgaattgttgttgtagggaagtggaagataaggcctctaagta---agatgaatgataagaggtttgccaattgagttttatc |
4871258 |
T |
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