View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_10 (Length: 569)
Name: NF18317_high_10
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 36 - 553
Target Start/End: Original strand, 31980756 - 31981270
Alignment:
| Q |
36 |
gaggttttgttcaacggaagtgtggcagtaccaacctactcgcccgatccttatatggattttagaagatcgatgcaagagatggtggaggcgcgaccgg |
135 |
Q |
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| T |
31980756 |
gaggttttgttcaatggaagtgtggcagtaccaacctactcgcccgatccttatatggattttagaagatcgatgcaagagatggtggaggcgcgaccgg |
31980855 |
T |
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| Q |
136 |
agttgatggatgtgaaatcaaattggaacatcttgcatgagttgcttctttgttaccttgctctcaacccaaagaatactcacaagttcattcttggtgc |
235 |
Q |
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| T |
31980856 |
agttgatggatgtgaaatcaaattggaacatcttgcatgagttgcttctttgttaccttgctctcaacccaaagaatactcacaagttcattcttggtgc |
31980955 |
T |
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| Q |
236 |
ttttgccgatctcctcgttaccctcatgtcattctagtcatggttttaaattgcagttgcggttgcactgcaat-aaatgtaagcaaaaatggtcaatgc |
334 |
Q |
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| T |
31980956 |
ttttgccgatctcctcgttaccctcatgtcattctagtcatggttttaaattgcagttgcggttgcactgcaataaaatgtaagcaaaaatggtcaatgc |
31981055 |
T |
|
| Q |
335 |
gaccaccatcccaattgtgataccgttgcagagatcgctagaattgttatattacgactgcaatttcagaccacattttagaactatgattataatggtc |
434 |
Q |
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| T |
31981056 |
gaccaccatcccaattgtgataccgttgcagagattgctaaaattgttatattacgactgcaattacaaaccacaatttagaactatgattctaatggtc |
31981155 |
T |
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| Q |
435 |
tagcaaggtgttacaatttggattannnnnnnnnngtaaattgaaatgataaaaatgcatgtaacgtggatggcagttaatgatttgtctcatcatcata |
534 |
Q |
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| T |
31981156 |
tagcaaggtgttacaatttggatt----tttttttgtaaattgaaatgataaaaatgcatgtaacgtggatggcagttaatgatttgtctcatcatcata |
31981251 |
T |
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| Q |
535 |
aattgatctgctacttcat |
553 |
Q |
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| T |
31981252 |
aattgatctgctacttcat |
31981270 |
T |
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Back To:
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 38042481 - 38042383
Alignment:
| Q |
45 |
ttcaacggaagtgtggcagtaccaacctactcgcccgatccttatatggattttagaagatcgatgcaagagatggtggaggcgcgaccggagttgatg |
143 |
Q |
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||||||||||||||||| || ||||| || || || || ||||| ||||||||| |||| || ||||||||||||||||| |||| ||| ||||||||| |
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| T |
38042481 |
ttcaacggaagtgtggcggtgccaacatattcaccggacccttacatggattttcgaaggtcaatgcaagagatggtggaagcgcaaccagagttgatg |
38042383 |
T |
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