View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_112 (Length: 229)
Name: NF18317_high_112
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_112 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30698981 - 30698770
Alignment:
| Q |
1 |
ctaaacagaaacctctttcttcctaatgcatatgatgactagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctc |
100 |
Q |
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| T |
30698981 |
ctaaacagaaaccactttcttcctaatgcatatgatgagtagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctc |
30698882 |
T |
|
| Q |
101 |
tttgaaccatttcatcatgaccctaatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaatcatgaactag |
200 |
Q |
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| T |
30698881 |
tttgaaccatttcatcatgaccctaatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaatcatgaactag |
30698782 |
T |
|
| Q |
201 |
tgaagaactttc |
212 |
Q |
| |
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|||||||||||| |
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| T |
30698781 |
tgaagaactttc |
30698770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 30719112 - 30718946
Alignment:
| Q |
24 |
taatgcatatgatgactagctcttacttcaataacccagatttggaaatgttgcaacaagatcctactaatattctctttgaaccatttcatcatgaccc |
123 |
Q |
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||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| ||||| |
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| T |
30719112 |
taatgcatacgatgagtagctcttttttccataacccagatttggaaatgttgcagcaagatcttactaatattctgtttgaaccatttcatcaagaccc |
30719013 |
T |
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| Q |
124 |
taatattcatgattatctttcctttgacatggttgaccaacaaggaccaacaaaaaatgaaccaaat |
190 |
Q |
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| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||| |
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| T |
30719012 |
ttatattcatgattatctttctttttacatggttgaccaacaaggaccaaacaaaaacgaaccaaat |
30718946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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