View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_117 (Length: 225)
Name: NF18317_high_117
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_117 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 44631035 - 44631223
Alignment:
| Q |
9 |
acatcatcacgttattaatcatcttccaacaagaatatatatccattgaattgcagcagggaatgaatagtgaatcaacataactaacgaacagactcac |
108 |
Q |
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| T |
44631035 |
acattatcatgttattaatcatcttccaacaagaatatatatccattgaattgcagcagggaatgaatagtgaatcaaca----taaccaacagactcac |
44631130 |
T |
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| Q |
109 |
cacttgataacatagatcgaagaactggg---cttcttctgcggggtttcagagcagcagaggacgaaggaggatgttgcattttttgatgtacgtctga |
205 |
Q |
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| T |
44631131 |
cactt---------gattgaagaactgagcttcttcttctgcggggtttcagagcagcagaggacgaaggaggatgttgcattttttgatgtacgtctga |
44631221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 207
Target Start/End: Original strand, 44798015 - 44798203
Alignment:
| Q |
9 |
acatcatcacgttattaatcatcttccaacaagaatatatatccattgaattgcagcagggaatgaatagtgaatcaacataactaacgaacagactcac |
108 |
Q |
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| T |
44798015 |
acattatcatgttattaatcatcttccaacaagaatatatatccattgaattgcagcagggaatgaatagtgaatcaaca----taaccaacagactcac |
44798110 |
T |
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| Q |
109 |
cacttgataacatagatcgaagaactggg---cttcttctgcggggtttcagagcagcagaggacgaaggaggatgttgcattttttgatgtacgtctga |
205 |
Q |
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| T |
44798111 |
cactt---------gattgaagaactgagcttcttcttctgcggggtttcagagcagcagaggacgaaggaggatgttgcattttttgatgtacgtctga |
44798201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 207
Target Start/End: Complemental strand, 35162099 - 35161902
Alignment:
| Q |
9 |
acatcatcacgttattaatcatcttccaacaagaatatatatccattgaattgcagcagggaatgaatagtgaatcaacataactaacgaacagactcac |
108 |
Q |
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| T |
35162099 |
acattatcatgttattaatcatcttccaacaagaatatatatccattgaattgcagcagggaatgaatagtgaatcaaca----taacgaacagactcac |
35162004 |
T |
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| Q |
109 |
cacttgataacatagatcg--aagaactg-ggcttcttctgcggggtttcagagcagcagaggacgaaggaggatgttgcattttttgatgtacgtctga |
205 |
Q |
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| T |
35162003 |
cacttggttgaagaactcggcttcttctgcgggttcttctgcgggatttcagagcagcagaagacgaaggaggatgttgcattttttgacatacgtctga |
35161904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 39845241 - 39845115
Alignment:
| Q |
43 |
atatatatccattgaattgcagc-agggaatgaatagtgaatcaacataac---taacgaacagactcaccacttgataacatagatcgaagaactgggc |
138 |
Q |
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| T |
39845241 |
atatatatccattgaattgcagggagggaatgaatagtgaatcaacataacgagtaacgaacagactcaccacatggtaacagagattgacgaattgcgc |
39845142 |
T |
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| Q |
139 |
ttcttctgcggggtttcagagcagcag |
165 |
Q |
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| T |
39845141 |
ttcttctgcggggtttcagaggagcag |
39845115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 39840348 - 39840291
Alignment:
| Q |
68 |
ggaatgaatagtgaatcaacataac-----taacgaacagactcaccacttgataaca |
120 |
Q |
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| T |
39840348 |
ggaatgaatagtgaatcaacataacataactaacgaacagactcaccagttggtaaca |
39840291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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