View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_122 (Length: 216)
Name: NF18317_high_122
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_122 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 5823440 - 5823601
Alignment:
| Q |
44 |
aattttattgagaaagacatggttctacgtaaaagtataatttggcaaattaaatatgatgaaatattaattaggaaagaaggaacaataaagagattta |
143 |
Q |
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| T |
5823440 |
aattttgttgagaaagacatggttctacgtaaaagtataatttggcaaattaaatatgatgaaatattagttaggaaagaaggaataataaagagattta |
5823539 |
T |
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| Q |
144 |
ttttctgtgtttgtgagtatgt------aagtacgttgaagagatggtttggaaaagaaaac |
199 |
Q |
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| T |
5823540 |
ttttctgtgtttgtgagtatgtaatgggaagtacgttgaagagatggtttggaaaagaaaac |
5823601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 5828445 - 5828328
Alignment:
| Q |
10 |
gagagaagaagaaagtaacaaaacaaaagccaataattttattgagaaagacatggttctacgt-aaaagtata-atttggcaaattaaatatgatgaaa |
107 |
Q |
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| T |
5828445 |
gagaaaagaagaaagtaacaaaaccaaaggcaat---ttggttgagaaagacatggttctatgtaaaaagtatagttttggc-----aaatatgatgaga |
5828354 |
T |
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| Q |
108 |
tattaattaggaaagaaggaacaata |
133 |
Q |
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| T |
5828353 |
tattatttagcaaagaaggaacaata |
5828328 |
T |
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