View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18317_high_124 (Length: 214)
Name: NF18317_high_124
Description: NF18317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18317_high_124 |
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| [»] chr7 (10 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-100; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 46532006 - 46532197
Alignment:
| Q |
23 |
gagacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaaca |
122 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46532006 |
gagacagacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaaca |
46532105 |
T |
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| Q |
123 |
ccaagcaaatctataagtgcaacaaggtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcagtgtcaccatagcc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
46532106 |
ccaagcaaatctataagtgcaacaaggtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcggtgtcaccatagcc |
46532197 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 46323106 - 46322915
Alignment:
| Q |
23 |
gagacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaaca |
122 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
46323106 |
gagacaaacataggctttgattctttcagggcgaaacatgcaaaggtaccaaccaatgatggcaccccaatcatgagctacaagaaacacttgatcaacg |
46323007 |
T |
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| Q |
123 |
ccaagcaaatctataagtgcaacaaggtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcagtgtcaccatagcc |
214 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46323006 |
ccaagcaaatctataagtgcaaccagatcacctacaatgtgaaaacctgtgtagctgcttattgaagatggagcctcagtgtcaccatagcc |
46322915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 46524453 - 46524644
Alignment:
| Q |
23 |
gagacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaaca |
122 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
46524453 |
gagacagacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagcaacaagaaacacttgatcaaca |
46524552 |
T |
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| Q |
123 |
ccaagcaaatctataagtgcaacaaggtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcagtgtcaccatagcc |
214 |
Q |
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|| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| || | |||||| ||||| || |||||||||||||| |
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| T |
46524553 |
cccagaaaatctataagtgcaacaagatcacctactatgtgaaaacctgtgtagctactaactgaagacggagcatcggtgtcaccatagcc |
46524644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 30 - 214
Target Start/End: Complemental strand, 46326804 - 46326620
Alignment:
| Q |
30 |
acataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaacaccaagca |
129 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | ||||| || ||||| || |||||||||| |
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| T |
46326804 |
acataggctttgattctttcagggcgaaacatacaaagataccaaccaatgatggcacccatatcatgaccaacaaggaaaacttgttccacaccaagca |
46326705 |
T |
|
| Q |
130 |
aatctataagtgcaacaaggtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcagtgtcaccatagcc |
214 |
Q |
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| || || || | ||||| |||||| || | |||||||| ||||||||||| || ||||| ||| | || |||||||||||||| |
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| T |
46326704 |
agtcgatgagagaaacaatgtcaccaactacgtgaaaacatgtgtagctgctaatggaagacggaacatctgtgtcaccatagcc |
46326620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 46520388 - 46520485
Alignment:
| Q |
24 |
agacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaac |
121 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| |
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| T |
46520388 |
agacaaacataggctttgattctttcagggcgaaacatgcaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaac |
46520485 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 46490172 - 46490263
Alignment:
| Q |
36 |
gctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaacaccaag |
127 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
46490172 |
gctttgattctttcagggcgaaacaaacaaagataccaaccaatgatggcaccccaatcatgagctacaagaaacactcggtcaacgccaag |
46490263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 46478960 - 46479055
Alignment:
| Q |
26 |
acaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaac |
121 |
Q |
| |
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||||||||||||||||||| ||||||||||||| | |||||||||||||||||| || ||||||||||||||||| ||||| |||||||||||||| |
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| T |
46478960 |
acaaacataagctttgattttttcagggcgaaataaacaaagataccaaccaatcatggcaccccaatcatgagctacaaggaacacttggtcaac |
46479055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 46516750 - 46516847
Alignment:
| Q |
27 |
caaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaacacc |
124 |
Q |
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||||||||||| |||| | | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
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| T |
46516750 |
caaacataagccttgactttctcaggacgaaacaaacaaagataccaaccaatgatagcaccccaatcatgagccacaaggaaaacttggtccacacc |
46516847 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 46494457 - 46494588
Alignment:
| Q |
23 |
gagacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaaca |
122 |
Q |
| |
|
|||||| ||||| ||||| | ||| ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||| || ||||| ||||| |
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| T |
46494457 |
gagacacacataggctttaactctctcagggcgaaacaagcaaagataccaaccaacgatggcaccccaatcatgagccacaaggaagacttgatcaacc |
46494556 |
T |
|
| Q |
123 |
ccaagcaaatctataagtgcaacaaggtcacc |
154 |
Q |
| |
|
|||||| | || || || ||||||| |||||| |
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| T |
46494557 |
ccaagcgagtcgatgagcgcaacaatgtcacc |
46494588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 46464833 - 46464934
Alignment:
| Q |
24 |
agacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaacac |
123 |
Q |
| |
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||||||||||| ||||||| ||||||||| ||||||| ||| ||||||||||| | | ||||||||||||||||| |||| ||| ||||| ||||| | |
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| T |
46464833 |
agacaaacataggctttgactctttcaggacgaaacaaaca--gataccaaccagttaaggcaccccaatcatgagcaacaaaaaagacttgatcaaccc |
46464930 |
T |
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| Q |
124 |
caag |
127 |
Q |
| |
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|||| |
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|
| T |
46464931 |
caag |
46464934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 7475565 - 7475374
Alignment:
| Q |
23 |
gagacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatgagccacaagaaacacttggtcaaca |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
7475565 |
gagacaaacataggctttgattctttcagggcgaaacgtgcaaaggtaccaaccaatgatggcaccccaatcatgagccacaagaaacacttgatcaaca |
7475466 |
T |
|
| Q |
123 |
ccaagcaaatctataagtgcaacaaggtcacctacaatgtgaaaaccagtgtagctgcttattgaagatggagcctcagtgtcaccatagcc |
214 |
Q |
| |
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||||| |||||||||||||||||||||||||| || || ||||| || ||||||||||||||||||||||||| || |||||||||||||| |
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| T |
7475465 |
ccaagaaaatctataagtgcaacaaggtcaccaaccatatgaaaccctgtgtagctgcttattgaagatggagaatcggtgtcaccatagcc |
7475374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 88396 - 88323
Alignment:
| Q |
24 |
agacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatg |
97 |
Q |
| |
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||||||||||| || |||| |||||| || || ||||| |||| ||||||||| ||||| |||||||||||||| |
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| T |
88396 |
agacaaacataggccttgactctttctggtcggaacatgcaaacataccaaccgatgattgcaccccaatcatg |
88323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 37151834 - 37151907
Alignment:
| Q |
24 |
agacaaacataagctttgattctttcagggcgaaacatacaaagataccaaccaatgatagcaccccaatcatg |
97 |
Q |
| |
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||||||||||| || |||| |||||| || || ||||| |||| ||||||||| ||||| |||||||||||||| |
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| T |
37151834 |
agacaaacataggccttgactctttctggtcggaacatgcaaacataccaaccgatgattgcaccccaatcatg |
37151907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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